Array 1 82034-83039 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000127.1 Nocardiopsis prasina DSM 43845 contig_127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 82034 30 100.0 31 .............................. GAACGTGCCTGCGCAGAACCGCGAGGTCAGC 82095 30 96.7 31 .............................G CGTGCCTCCGGCGGGCCTCAGGAATCGAGGA 82156 30 96.7 31 .............................G ACGGTGCCGTTCAGCAGGGCGTAGGTGCCAG 82217 30 96.7 31 .............................A CGGGCCTCCGTCACCAGGGCGGACCATCCCC 82278 30 100.0 31 .............................. CGGTCAGGTCCAGGGTGCGGCCCGGGTCCGG 82339 30 96.7 31 .............................G CCCGCGAGTGGGAGAACAACTACGGCACCGG 82400 30 96.7 31 .............................G CCTCGGTCCTGGGCGGAGACACCGAGGAGTG 82461 30 100.0 31 .............................. GGGCCGGGATCCCGGACTCCACCAGGGCGTT 82522 30 96.7 32 ...T.......................... AGCGCCTGCACTGGGCCACCAAGGCCCGCAAG 82584 30 96.7 31 .............................T GGAGCCTCCGTCACCAGGGCGGACCATCCCC 82645 30 96.7 31 .............................A CGGGCCTCCGTCACCAGGGCGGACCATCCCC 82706 30 96.7 31 .............................T GGAGAAGCAGGTCGCGGACCTTGCGGCTCTG 82767 30 93.3 31 ........G....................T CCGGCGTCGTGCTGGGCCTGTCGACCGTGGG 82828 30 96.7 31 .............................A GCTCGGGCACTCCGGCCGTGGCCTCCAGGAG 82889 30 100.0 31 .............................. GGGTCGCGAACTGGTGGGCGCACGTCAACGT 82950 29 96.7 31 .................-............ GCAACGACGGTGCCGTCGGCGGTGGTGATGG 83010 30 83.3 0 ..............T..T......A..TG. | ========== ====== ====== ====== ============================== ================================ ================== 17 30 96.5 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CTACCACCTGACCGCCTTCGTCGGTCCGGAACTCCCCGACGTGCTGGCCCTCGCGGACGTGGTGGTCTCCCGCAGCGGCGCCGGAACCATCGCCGAACTCACCGCCCTGGGCAAGGCCGCGGTCTTCATCCCGCTGGCCTCCTCCGCCGGGAACGAGCAGGCGCACAACGCCCGCCACCTCCAGGAGTCCGGGGCGGCCGTCGCCCTCCTCGGCGAGGTCAACCCCGCGAACCTCCAGGCGGCGGTGGAGCCTTTGCTCGCCGACCCGGCCACCCGTAACGCCATCGCTTCCCAGGCCCGCTCCAAGGGCATGCCCGACGCCGCCGAACGCCTCGTGGACGTCCTAATCGCCGCCGCCAACTGATCCCGGAGCCACCTCCACGGAGGTGGTCCCATTCGTGTCACGGAATCACTTATGACCAGGGAAATCACCAGTGTCCAACTTTCGAGAAGTTGGAAAAACAACCCCTTGCCGCTGGTAAGTTCCCTGGTCAAAAAGT # Right flank : CCTGCTTGACTGGTGGGGTCTAAGAAGCTGGGGGATGCCGTGGTCGGTCGGGGTTGGTGCGCGGTGGGGCTCGCGGTTCTGCTCGCGGGATGCGGGGCGCAGGCAGGGGAGTCGGAGGCCCTGCCGGAGGGCGGGTTCGACTATCAGTTGGGTGAGGCCTACCCACCGCCCGAAGGGGCCACCATCGTGGTGCGCGACTCCACGGCCGAACCGGAGCCGGGCATCTACTCGGTCTGTTACGTCAACGGCTTCCAGACCCAGCCCGGGGAATTGGACTCATGGCTGGACGCGGGGCTGGTGTTGCTGGACGGGGGCGGAGAACCGGTCGCCGATCCGGGTTGGCCGGACGAGATGCTCCTGGACACCTCCACGGACGACAAGCGGGAGCGGATCGCGGGAATCCTCGCCGAGACCGTTGACGGGTGCGCGGAGGCGGGGTTCGACGCTGTGGAGTTCGACAACCTGGACTCCTACCTGCGCTCCCGGGGTGCCTTGAGCGT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51070-51404 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000146.1 Nocardiopsis prasina DSM 43845 contig_146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 51070 30 100.0 31 .............................. TGTGTGGTGTGGCGTTCGCGGTCCGTGGAGG 51131 30 100.0 31 .............................. AGGCCATCACGGACCTGCTCACCCGCAAGCC 51192 30 93.3 31 ...........A.................C CGCGGCGGCTGTCGTACATGTTCACCACCAG 51253 30 90.0 31 ..........A...G..............T TGTTCGTAGCCAGGGTCATAACCTGGCGGGC 51314 30 93.3 31 ............................GT AGGTGTCGTCCTCGTCGACTGACGCGGTGGT 51375 30 83.3 0 ............T............GT.TA | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.3 31 GTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CACGGAGAGTGAACCCGCCCAGCCCACTCAGGGTGCGGGGGTCGCGCTGGCGACGACCCGCTCCACCGGAACCGGAGCGGCGGTGGTCACCGCCCTCGCCCTCACCTGGCTGAACCCGCACGTGTACCTGGATACCGTGTTGTTCCTCGGTTCGGTCGCCAGCCAGCAGGTCGGCGAGGCCCGCTGGTGGTGGGCGGGCGGTGCGGTCACCGGAAGCTTCGTGTGGTTCTTCGCCCTGGGCTTCGGCGCCCGGCTGCTCCGCCCCGTCTTCGCGAAGCCCGGAGCCTGGCGGGTGCTCGATGGCATCATCGCCCTTGTCATGCTCACCCTCGGGCTGCGTCTTGCCCTGGGCGGCTGACCCGAAGATCGGTAGCCTGCTCTGGTGAGCGGGAGAGAGGCCCCTGCGTGGGTTCCCTTTGGGGTGTATGTCTTCGGAGTCTGTTTCTCGACAAGTTGTAGATTTCGCTGGTTTCGCGCTCTGGAACCGCAGGTCAACGAGT # Right flank : AGGTCGGGGGAGTGGGTCACTCCGCCGCTCGGGGCAGGCTGGTGCGGCTGCTCGGCGAGCTGCGGACTCTGCGCCCGAATCCCGCGCAGCTCGACGCGCTCGACCGGCTGGCGTAGTACTAAGAATCTACGTAGTAAAGGTGGGGGAGCGCCCCGTCAGGAGAGCGCTCCCCGGTACTCAGGATCCTTGGTAGGTGGCGTGGTCGAAGTCGGCGTGACAACCCGTGCCGGTCAGGTCCTGGACCCACAGACCCAGGAACGCGCCCGTGAAGCCCCAGATGGTCGCCGTCTCACCGTCGCTCTCTGCGGCGTAGTCGTCGGACAGGATGCTGGCGTCCAGGACCCCGCCGACGGGCGTCCAGTCCTGGCCATCGGGGGAGAGGGCGAACCGCAGTGCGGCTCCGTCGATCTCCGCGCGCAGGTGAAACCGCTCCCAGCCCCGCACGTCGACCCGGTCCCCGGACTCGCGCACCCGTCCCCGGTCGGAACTGAGCACACCGG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 628-897 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000174.1 Nocardiopsis prasina DSM 43845 contig_174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 628 30 100.0 32 .............................. GCCCGGATGCGTCGGTCGCGGGCCTGGGCGGG 690 30 96.7 27 ............................T. GCGTTCGCGGTGGTCCCACTGGGTGCG 747 30 96.7 31 .............................C TCCAGTGCACCTTGAGGACCGTGGACGGCGC 808 30 100.0 31 .............................. CGGCAAGTGGCTCGTCTGGGACGGGCACCGG 869 29 86.7 0 ..............TT.........-.T.. | ========== ====== ====== ====== ============================== ================================ ================== 5 30 96.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CACCCCAAAACCGCCCCACACCAGCACCCCTGAGCGCCCGTGCCCTAAGCCCCCGTGCCTCTGTGCGCCCGCTCATGCCCTGCCACCCACACTCGCCACACACGACCCACACCCCGGGGAGAGGAGGCCCACCCATGAACCCCGCCCCACACCCCACCGCAGAAGCACCCACCACCGGACCCGGGCCAGCTTCCACTCCTACCCCCCCGCACGCTGCCTGCCTTCGCTGCCGCTGTTGCGCTAGCACGAATGACCAGCCGCGACACGCGACCCGCTCACCACAGGCCCGGGGACCCGCACTCCTTCGCTGCCGCTGTTGCGTCGGAAAGCGTGACCGGCCGCGACACGAATCCCGGTCAGCGCAGGCATGGAGAAACACATCGCTGTGGCCGTAGGCTCACCCGTGACCGCAACAACAAAGGTGGATGTCGGTTTTGTCTGTTTCTCAACAAGTTGGAAAAACGAGCGCTTGCCACCGGTAAGTTCGCAGGTGAAAAAGC # Right flank : TGCTCAGCTCAGAGAGACAGGAGTACAGCTGCCCCAAGGGCAGGGAAGGGCCACGCGACGCTGGCGGGGGGCGCCGGGGTGGGGGTCCCCCCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90998-91517 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000181.1 Nocardiopsis prasina DSM 43845 contig_181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 90998 30 90.0 31 ..............T.............GG AAAAGAGAAGTTCCATGGGAATGCGCAAGGT 91059 30 96.7 31 .............................A TTCATATCCGTCAGAAGGCAGCTTTTCCTTT 91120 30 100.0 31 .............................. GACCCCACGCCTGCCCCTGCGTCGGCACACT 91181 30 100.0 31 .............................. GGCTACGGGTGGCCACCACCCACCCCCACGA 91242 30 96.7 31 ..............T............... GCCGTGGCCGTGAGTCCTCCCATGCGGGCGG 91303 30 96.7 31 .............................A TGGCCACGACGTCGCACGCCTCGAACGCGGA 91364 30 100.0 31 .............................. ACTGTGACGGCTACGTGTGGTCTCGGCTGAT 91425 30 96.7 31 ....................T......... TTCGCACTCTGGCGACGGTCGCTCGGCATCC CG [91433] 91488 30 80.0 0 ...........A..........C..GA.AT | ========== ====== ====== ====== ============================== =============================== ================== 9 30 95.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : TTCGAGATCTCCGAGGAGATGATCGCGCTCGCCCGCCAGAACGTTCCCGAGGCGAGGTTCCGCCGGGCCGACATCGTCGACCTGGACCCGGTGGAGTGCTCGTACGACGCCATCGTGGCGTTCTTCTCGCTGCTCTGCCTGCCCAAAGAGCGCATCCCGCAGGCCCTGGGCCGCGTGCGCGCCTCGCTGGCGCCCGGCGGCCTGGTGTGCCTGTCGATGGTCGAGGCAGACCTGGACGACCAGCCCATCTCCTTCCTGGGAAACGAGATCCGGGTGTCCGCCTACCCCCGTGATGAACTGAGAGAGGTCGTGGAGCGGGCCGGGCTCATCATCGAGGACGAGCGCGTGGTCTCCTACAACCCCGACGGCGCCCACCCCGAGGTGCAGATCTTCCTCACTTGCCGCCGAGGCGCGTAGCCGCAAGGAAGGTGGAAATGTCCGTTTCTCGGGAAGTTGGAAAAATGGACCCTTGCCACCGGTAAGTTCCCAGGTGAAAGAGT # Right flank : TGACTGAGGGGGACCGCCTTCGTGGCGGTCCCCCTCATTGGTCAGATGGCTAGTCCAGGCCCAGGATCGGCTCCAGGCCCAGGGTGAGGGCCTCGGGAAGCTCCGCGGTCCTGCGGATGCCAAGGAGGACTCCGGGCATGAACGAGGTGCGGTTCATCGAGTCGTGGCGGATCTTCAGGGTCTCGCCGTCGGTGCCGAACACGACTTCCTGGTGGGCGATGAGGCCCTGGATGCGCAGGGCGTGCACGCGGACGCCCTCGACGTCCGCGCCACGGGCCCCGGGGATCTCCGAGGTGGTGGCGTCGGGCATCGGCTGGGTCCCGGCCTCACGGCGGGCCTCAGCGACGAGCTCGGCGGTCCGGTAGGCGGTGCCGCTGGGGGCGTCGGCCTTGTTCGGGTGGTGCAGCTCGATGATCTCCGTGGAGTCGAAGTAGGGCGCGGCCTTCTTCGCGAAGTGCATCATCAGGACGGCCGCGATGCCGAAGTTGGGCGCGATGAGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5757-5480 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000189.1 Nocardiopsis prasina DSM 43845 contig_189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================== ================== 5756 32 100.0 29 ................................ GTCCAAGCGGCGCGGAGGCGAGCGAACAT 5695 32 100.0 29 ................................ CTCTTGCCGTTCTTGCGGGCGACACCCAC 5634 32 93.8 29 ..............T..............T.. GAGAGGATCCCGCCTCGCACGTGTGGCCG 5573 32 90.6 30 .......T.................G....A. GTTCTTCAAAAGCATCAAGGAAGGCCTCCA 5511 32 93.8 0 .........................G....G. | ========== ====== ====== ====== ================================ ============================== ================== 5 32 95.6 30 GTAGGCCCCGCGCACGCGGGGATGGACCGGCG # Left flank : ATGTAGGTGCTGGGGGTGATCGCGGGATCGAAGGCGGGCGCTTCGGCGCGGATCGTCTCCCACCACGCCCGCGGCACGGGCGGGTTGACCCAGCGGGAGGGGTCGGTGTTGCCCATGGTCTGGGTGGGAACCACGAGGTTCCCAGCGGGCCCCACCGCGTCCAGCAGCGCCTGGACCACGGCCTGGTCGGCCCCGCACACCCACCCGAGGGAGCGCAGTGAGGTGTGGACCAGGAGTGTGTCACCAGGGCGCACCCCCAGGTGCGCCAGGTGCAGGGTGAGTGAGGCCGCCGTGCGCGGCCCGTCCGAGAGGTAAGGGGGAGTGGACACGAGGGCGCTCCGGTGCTGGTGGACACTTCGGGCCATTTTCCCAGCGGGAACGCCCGCGAGGCCAGTCAGTTTCGCTCTCGGGCCCTCTCTGCCATGATGCGACCCCCGGAACGCCTGCCGATGCGATTATCAAGCGGAGATAACGGCTCGCGTTCCCGCAGGTCGCGAAGC # Right flank : TAGGGGGCCTTGCCCCAACCGCCATGACGAAGGCCCGTATGCGGGGCCTGGCTAGTCCAGGACTCGCATGACGAGCCCCGTGCGGGGTTTGGGGCCGAAGGACGTGGACTTGCGGGGGGTGAGTTCGCCCCGGTCGGCGACGGCGTAGACCTGCTCCACGTGCAGCGGGGGCACGATCACCGCAGTGCCCTTCTCGTCGCGGGCAGCGGCCTCGGCCTCGGCCGGGTCGTCATGGACCATCCGCACGTGTTCCTCGGGGAAGTGCCACAGGGGCAGGAGCACCTCGTGCAGGGCGGCCGTGGCCAGGTGGCGCCAGTCGGGGGAGCGGTCGGGCATGGCCCGTTGGAGCACGGCCTCGTCGAATCCGCTCACGAGGTGGGCCTCGCCCTCAGCTGACACCAGGAGCAGGGCCGGGGCCTGCGCGTCCTCCAGGAGCGCGGGGTCTGCTTCGGTGACCGGCTCCACCCGGGCCACGGTTCGGGCGGCGGCCAGGGCCTCGG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 325-539 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000081.1 Nocardiopsis prasina DSM 43845 contig_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 325 30 93.3 31 ............................TT ATCGAGGGCATGACTGAAATCGGATTCGGAT 386 30 100.0 32 .............................. GGCACACCGGTCTACGCGCGTACCGGTACACC 448 30 96.7 31 .............................G TGGCGGCGGCCCTCAGCCGGTTCATGCGGCC 509 30 80.0 0 .....................T.CTC.T.T | C [521] ========== ====== ====== ====== ============================== ================================ ================== 4 30 92.5 32 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CCGCGACACGCGACCCGCTCACCACAGGCCCGGGGGCGCGCCTTCCTTCGCTGCCGCTTTTCCGTCCACCACCCCCACCACCACGACACGCGAAACGATGAACACCAGCCCTGGTCCCGCACTCTCCTTCGCTGCCGCTGTTGCGTCGGAAAGCGTGACCGGCCGCGACACGAATCCCGGTCAGCGCCGGCATGGAGAAACACAGCGCTGTGGCCGTAGGCTCACCCGTGACAGCAATAACGAAGGTGGATGTCGGTTTTGTCTGTTTCTCGACAAGTTGGAAAAACGAGCGCTTGCCACCGGTAAGTTCCCAGGTGAAAGAGTC # Right flank : TTACTGGGCGGCGGCTGCGCGGACTCGGCGACGGATGAAGACGGCCAGCACACAGGTGGAGAGGAAGGTGGCGACGGCCATCGGGGTGAAGGCCCACTGGTAGGAGGTCGGATCCTCCGGCAGGGCCTGGAGGATGGCTCCGGCCGCCACTGTGCAGATCACGGCGGTGGTGAAGCCGCTCATGTTGACCAGACCGGAGGCGACACCGGTCCGGCTGGCCGGAATGCCGTCGCGGGCGAAGTCGAAGGAGACCGTCGGTGCCATGGTCTGTCCGAGGGCGCTGACGGCCAGTACCGCCACACCCACGACCACGGGGGCTCCGCCGGGCCAGGCCACCAGGAGCAGCCAGCCCAGGGTCAGGACGCCGCTCAGAATGAGGGCGAAGTACACCCGCACCCCCGGCCAGCGGCCGACGAGGACACCCGCGACCGGGGCCAGCCAGAGAGCTCCACCGGCCAGGCCTGTGAGGGTGAGGGCCGCGGTGCCCTCGGACAGTCCCA # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 89546-89273 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000088.1 Nocardiopsis prasina DSM 43845 contig_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89545 29 96.6 32 ..............C.............. CAGGCGCTGAAAGAGCACTCGGCCTCCGGGAA 89484 29 96.6 32 ..............C.............. CGCCCGTACCGGGGGTCACGGACACGGCCGAT 89423 29 100.0 32 ............................. AACAGCGTGGTCCACAGGGGCGACGGAGACCT 89362 29 100.0 32 ............................. GGGAAACACGGTGGGCGCTGCCCACCTACGCC 89301 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : AAGCACGGATTCCTGCGTGAGCTGGGCGCCGACGAAGTGATCGACTACCGCGAGGTCGACTTCGCCGAGGCCACCAGCGACATCGACGTGGTTCTGGACCCGCTGGCCGGTGACGTGGCGGAGCGCTCCCTGAAGGTGATGCGCTCGGGCGGGACTCTGGTCTCCCTGCTACCCCTGCCTGGGGAGGTGGTGGAGCGGGCCGCCCAACGTGACATTCGAGCGGTGTCGATGCTGGTCGAGGACGACCACGCCGGGATGGAAGCGATCGCCGAACTCGTGGCCGAGGGGGCTCTGAAGGCGCACGTGGAGGCGACGTTCCCGCTGTCCGAGGCCGCGAAGGCCCACTCCCTGGGCGAGACCGGCCGGACCACGGGGAAGATCGTCCTGGTCATGGAGGACAATTAGGGCGGGAGAACTGGAAAGCTGAGTCGGATTTGTCTGTTTCTGGAGAACTTACAAAAACAGACCCTTGCCGCCGGTAAGTTCGCAGGTGAAAAAGG # Right flank : GCTCGCTCACTCCAGATCCACTCCAGATGGAAGTTCCCCACGCACGTGGGATTGGGCCGCATCAGGCCGAGGTGGTCGCCTGCGGCCCAGGGGCTCCTGATCCGGTCACGGGCATGGGGCTCGCCCCCACAAACACCCGGACCAACCCGGGCCTGAGCCCGCTGACGACGAGCCGAAGGAGAACCACGGCGACCACTGAGACTGATCCCTGACGTGCGACGAGGCAAGGCCCCTTGCTCGGGTGGTACGCGTTGCTACCGGCCCCGGGCTGGGACCTCGGCCTTGAGGAGCATCTCCTCGTACTCGTCCTCGGGGTCGGAGTCCAGCACGATCGCCCCGCCAGCGCCCACGGTGACCTCACCGTTGGCGTGCACGGCCGTGCGGATGACGATGCTGAGGTCCGCCTCGCCGGTGTGCGAGACGTAGCCCAGCGCCCCGGAGTACACACCTCTGGCCGAGGACTCCAGCCGGTCGATGAGCTCCATCGTGCGCAGCTTCGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1001-2074 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000087.1 Nocardiopsis prasina DSM 43845 contig_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1001 30 100.0 31 .............................. CGAGCAGCAGGTCCCATTCGTTCGAGACAGC 1062 30 100.0 31 .............................. TCACCCGCTAACCCAACTCAGCAGCTCACTA 1123 30 96.7 36 .............................G CGATCCTGTTCTGGATCCCCCGCGACCTGACGACCA 1189 30 93.3 31 ............................TT GCTGGAGCAGGTCCCATTCGTTCGAGACAGC 1250 30 100.0 31 .............................. CGAGCAGCAGGTCCCATTCGTTCGAGACAGC 1311 30 100.0 31 .............................. CGAGCAGCAGGTCCCATTCGTTCGAGACAGC 1372 30 100.0 31 .............................. CGAGCAGCAGGTCCCATTCGTTCGAGACAGC 1433 30 96.7 32 .............................C CGCTTCAGCGACGTGATGTCCCAGACGGCCCG 1495 30 96.7 31 .............................G CGCACAGCAGGTCCCATTCGTTCGAGACAGC 1556 30 100.0 31 .............................. CGAGCAGCAGGTCCCATTCGTTCGAGACAGC 1617 30 100.0 31 .............................. CGAGCAGCAGGTCCCATTCGTTCGAGACAGC 1678 30 96.7 32 .............................T CGCCCGCTGGCGCGAGCGCTCGGCGCCCGATG 1740 30 100.0 31 .............................. GAGGGAGACCAGCGGACGAGCCACCGATTCA 1801 30 93.3 31 ........A....................C CCAAGCTCAAGCGCGAAGAGCGCCGGACCAT 1862 30 93.3 31 .................G...........C CGCGCGTGGGGCGGATGGTGATCCGCGCGCG 1923 30 93.3 31 .................G...........C GTTTCGCGGGCTCGGGGAAGTCGGGGTCGTT 1984 30 96.7 31 .................G............ CCGAGTACACCGCCTCACATGCCCAGCGTCA 2045 30 93.3 0 .................G.......G.... | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 97.2 31 CTGCTCCCCGCGCACGCAGGGATGGACCCA # Left flank : CGAACCCCAACCCACACCACGGGAGAGGAGGCCCACCCATGAACCCCACCCCGCACCCCACCGCAGGAGCATCCACCACCACCGGGCCAGGGTCGGCCTCCACCCCCCTCCAGACGAGGACCACCCACCCCCCACGCCGCCTTCGCTGCCGCTGTTGCGATGGCACGAGTGACCAGCCGCGACTCGCGACCCGCTCACCACAGGCCTGGGGACCCGCCTTCCCTCGCCGCCGCTTTTCCGTCCACCACCCCCACCGCCACGACACGCGAAACGATGAACACCAGCCCTGGTCCCGCACCTTCCTTCGCTGCCGCTGTTGCGTCGGAAAGCGTGACCGGCCGCGACACGAATCCCGGTCAGCGCAGGCATGGAGAAACACATCGCTGTGGCCGTAGGCTCACCCGTGACCGCAACAACAAAGGTGGATGTCGGTTTTGTCTGTTTCTCGACAAGTTGGAAAAACGAGCGCTTGCCACCGGTAAGTTCGCAGGTGAAAAAGC # Right flank : AAGGAGGCCACCATGGCGCCGCATGTGGCTGGAGTGCTTCCGCGCAGGTTTCAAAACTGCCCGAAGCAGAGACAAACGATTCGCGCACGCGGGATAGTGCGTTGGCTAGGGGAATGACGCGAGTACTCGGGAAAGGGCCTTCTCGCCTGCGGGTTTCCAGGTGGGTTTGCCTCCTGGGAGGCCCTGTTCACCGGCACGGCCTATCTCGATGAGGCCGAGGCTCCGAAGGACGGCCCAGCCTCGGGAGCGTTGGATGGTGGCCTTGTCGGTGGGGTATCCGGTGAAGAACTCAGTGGCGTCGGGGAGCAGGACCCACGCGGCACAGAGGTCCGTGGCGGGATCACCTGAGCAGAGTTCACCGAAGTCCACGACACCCGTGAGGGCTCCGTTGGTGGTGACGACGTTGGCCGGGTGCAGGTCCGCGTGCAGCCACACCGGGGTGTGGTGCCAGTGGGGTGCGTCAACTGCGGCCTGCCAGACCTCCAGGATCCGGGGAATCT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCAGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46969-46817 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAE01000095.1 Nocardiopsis prasina DSM 43845 contig_95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 46968 30 100.0 31 .............................. TGGAAAGCACCGGGTGGGCGGCCACGATTAC 46907 30 96.7 31 .............................A ACACGTGGACACCGCTCCTGGAGATGCTTCG 46846 30 90.0 0 .........................G..TC | ========== ====== ====== ====== ============================== =============================== ================== 3 30 95.6 32 GTGAGCCCCGCGCACGCGGGGATGGACCGG # Left flank : CCGACCGGGCCTCCAAGGGACTGGGGATGCGGCTGGTCGAGGCCCGCGACGGGTACGCGGTGGTGGAGATGGTCGTGGGGCCCCTGATGCTCAACGGCTACGACATCACCCACGGCGGGTTCGTGTTCGCGCTCGCCGACACCGCCTTCGCCTGCGCGTGCAACCTGGACGGCGGCGACGTCACGGTGGCTTCGGGCGCGGACGTGACCTTCGTGGCCCCCACCAAGGAGGGGGACCTGCTGGTGGCGACCGCCGAGGAGAGGGTTCGGTTCGGGCGCAGTGGCGTCTACGACGTCACGGTCCGTCGGGGTGAGGAAGTCGTCGCGGAGTTCCGGGGTCGCAGCAGGAGCCTGCCGCAGAAGAGTTGATGGTGTGGGGCCGGGGTTTGGGGCTAGGGACTGAGGGTCTCAGGGCCCCGGCCTCTGACATCATGTGGACAAGATGTGCGGCTGTGAAGGTCAAGCGGAGATAACGGCCCGCGTCGTCGCAGGTCATTAAGC # Right flank : TAGGAGCAAGAGGCTGCCACAGCAGGGTGAGTCCTGCGGGCACAGGGGCGCAGACCTCCGTCTGGGGGTCTGCGCCTGAACCCCGGCTCTTCGTGGATGGCTCCAGGGCAGTGACCGTCACGGTCTCCGGTGCGGGATCAGCGCCCGTCGCCGCTGTCGACCGGGACGTCCAGGGCACCGACGGCGCGCTCCGCCTCCCGACGTGCGCACGCCCGGATCAGTTGTGCGTAGGACTCGCCGGTCATGCTCCTGATCGAGGTGACGCCCGAACCGACGTACTGGCGTGCCTGGAGGAGACCCTCCGAGGTGGCTGGGCCCCACCGGCCGTCGACTCCGTCGGGGGCGAGGGTGGAACCGAACCCGGCGGCCACGATCAGTCGCTGAACAGCTTTCACACCTTCGACCGGGGCGCCGGGCAGCAGGCCGTCGCCTTCCTTGAGTCCGAGCAACGAACCTTCTCCTCCTGTGATCGGCCCGGGGGCCTGGGTGAACGTGCCGTC # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //