Array 1 3790-2143 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXW01000016.1 Bifidobacterium breve strain BR-I29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3789 33 100.0 35 ................................. CAAGCGTTGAGCACTTTGTCGAGGTCGGTGTTGGA 3721 33 100.0 35 ................................. TATTTCGCGGAGTGGCCGACGCGGACGATGCCGTT 3653 33 100.0 35 ................................. ATTTCATCAATCAGGGCCAGCAGTTCCGCGCGTAA 3585 33 100.0 33 ................................. AATCCACACCGAACCCTAGGCGTCCGAGACTGT 3519 33 100.0 36 ................................. CGAGTCGAGGAGGTGAACCGTTTTGACCAGCGCAAC 3450 33 100.0 34 ................................. AATATCTTCCGTAATGAAATGCGATTGGCGTCTA 3383 33 100.0 35 ................................. CGCGAAACCGTGACCCATGCGCATGATATCCTCAA 3315 33 100.0 33 ................................. TGGTGGAATTGGCGCAATCGTATACGATTGAGG 3249 33 100.0 33 ................................. TGCTCGGCCATGAACATCGTCTTGTCGGGCGGC 3183 33 100.0 33 ................................. TCCACGGTGCGATCCACCATGTTGCGGTGCTCG 3117 33 100.0 34 ................................. CTCCGGCTCCTGACATTTAGATTCGAGGTGATCC 3050 33 100.0 34 ................................. TCTCATTTCAAACTACTTGATTTCAAGCATTTTC 2983 33 100.0 34 ................................. AACGATTTGCGGGACACCCCGTTGGAATCGTATT 2916 33 100.0 34 ................................. TCGAAATGGGCGGCTTGCATGCGATGGGTGAGAC 2849 33 100.0 34 ................................. TGAAATGTTTCTTGTCTGCGTATTCCACGACCGC 2782 33 100.0 34 ................................. TTCGCATGGATGCGGCAGACCGGCCGGCGCAATG 2715 33 100.0 36 ................................. GCTGTGGAGTCGAGCGGGTACATGGTCGCTTCATGG 2646 33 100.0 35 ................................. GGGATGGTCGTGATATCCACCCACCGGCCTGCCGA 2578 33 100.0 34 ................................. GCGTTCATGGCGACGTTCAACGCCCATTGCGCCA 2511 33 100.0 32 ................................. TGCTGGGACGAAATGCTCGAAACGACCAACAG 2446 33 100.0 34 ................................. AAAAAAGAAAACCTCTATTGGGGTTCGACCGTGC 2379 33 100.0 34 ................................. ACCCAGGCGAGCTTCGAGCCGCACGCCGCGCAAC 2312 33 100.0 36 ................................. CAAGTCGGGCAGGGCGTTGATGAGGCCCTGCGCCAG 2243 33 100.0 35 ................................. ATGATGCGCCGCGCCTTGCCGGCCGTCCAGCCCAC 2175 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCTGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTATCATTAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : GCCTACAATCAGCAGGTCGAGGCGTTCAATGTTTTTAGTCAAGTCGGTGTTTCGTGTTTCGTCACTAATTTTTTTCGGTTTTCGGCATGAGGAGTGCCGGCCGGTGGTTTGTTTTACTGGTTGTCCGTCTTGCCGAACATGAGGGCTTGGCTGACGCGTCGGCTGGGGCCGGTGAATTCGATGAGGCGTCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGATCGTCCCCCATTTGCTGAACTCGATGTTCGTGGTGAAGATGATGCTGCGACGTTCGTAGCTGCCGGCGATGATCTGGTAGAGGAGACGGGCCCCGTCGATGTCGAAGGGCACGTAGCCGAACTCGTCGAGGATGATCAGGTCGGCACGGGCGAGGTCCCCGAGCAGGCTGTCGAGGGCGCCGTCGCGTTTGGCCTTGCCGGGCTGGAGCACGAGCTCCGCGGTCTGTCGGAACCTCACGCTCCTGCCTTGCTCGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 76880-76367 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXW01000024.1 Bifidobacterium breve strain BR-I29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 76879 33 100.0 36 ................................. CATGTCGGATATGGCGACGGCCAGCGACTCCGGCAT 76810 33 100.0 37 ................................. AAGACGGAGATGCGGGCGGTGTCAAAGGGGTTGCCGA 76740 33 100.0 35 ................................. GCCAAAGTCTGCGCATTGCCAGCCGTCTTCTTCGC 76672 33 97.0 35 .............G................... TTCGCGTCGATGGAGACGTTCACCTTGTCCATGGC 76604 33 100.0 36 ................................. TGGCACGCCACCACAGTTGACCGGCGGGGACGTGCA 76535 33 97.0 35 .............G................... GGAAACGCCTGCATCATCGACGCCGGGTCCATGGA 76467 33 100.0 35 ................................. GTGACGTCCTATCTTCGTGGCGGATCGATCAACGG 76399 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 97.3 36 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GTGCAGAAATTGCTTAAGAAAAATTGAAGCAAAACACCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACCCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCCGGCCGATAGGCCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGCATTTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACGTTCAACGCGT # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCCATCGGGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //