Array 1 476947-477950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIC010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-044SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 476947 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 477008 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 477069 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 477130 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 477191 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 477252 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 477313 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 477374 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 477435 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477496 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477557 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 477618 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 477679 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 477740 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 477801 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 477862 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 477923 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCTCAAGATTTTGAGCGGACGGGAGCTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGATGCATGGGAGCACGGTAAACCACTGGCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCATATAAAGCTGGCCTTACCGCTGGCTGGAGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGATAAACCGCCATACCATTTCCACTGGCGCAACGATTTTTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494497-498142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIC010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-044SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 494497 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 494558 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 494619 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 494680 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 494741 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 494802 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 494863 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 494924 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 494985 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 495046 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 495107 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 495168 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 495229 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 495290 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 495351 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 495412 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 495473 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 495534 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 495595 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 495656 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 495717 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 495778 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 495839 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 495900 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 495961 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 496022 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 496083 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 496144 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 496205 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 496266 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 496327 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 496388 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 496449 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 496510 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 496571 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 496632 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 496693 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 496754 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 496815 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 496876 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 496937 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 496998 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 497059 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 497120 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 497181 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 497242 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 497303 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 497364 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 497425 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 497486 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 497547 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 497608 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 497669 29 100.0 48 ............................. AATCGGGGATAAACCGGTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 497746 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 497807 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 497868 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 497929 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 497990 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 498051 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 498113 29 96.6 0 ............T................ | A [498140] ========== ====== ====== ====== ============================= ================================================ ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //