Array 1 101262-100073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABADB010000010.1 Escherichia coli strain 102 N102_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101261 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 101200 29 100.0 32 ............................. ATATTCAGTCTAATGAAGCGCCATAATATTGC 101139 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 101078 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 101016 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 100955 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 100894 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 100833 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 100772 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 100711 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 100650 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 100589 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 100528 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 100467 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 100406 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 100345 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 100284 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 100223 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 100162 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 100101 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118012-116763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABADB010000010.1 Escherichia coli strain 102 N102_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118011 29 100.0 32 ............................. CCCGCTAAATATGCCGCGTTCGCTGAACGGCT 117950 29 100.0 32 ............................. GTGATTCTCGCGACAAATTGCGTAACCGGGTA 117889 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 117828 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 117767 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 117706 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 117645 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 117584 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 117523 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 117462 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 117401 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 117340 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 117279 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 117218 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117157 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117096 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117035 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 116974 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 116913 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 116852 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 116791 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //