Array 1 13242-14613 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJXM01000115.1 Klebsiella pneumoniae subsp. pneumoniae strain ATH10 NODE_115_length_14617_cov_3.62318, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13242 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 13303 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 13364 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 13425 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 13487 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 13548 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 13609 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 13670 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 13731 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 13792 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 13853 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 13914 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 13975 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 14036 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 14097 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 14158 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 14219 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 14280 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 14341 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 14402 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 14463 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 14524 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 14585 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26710-26257 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJXM01000069.1 Klebsiella pneumoniae subsp. pneumoniae strain ATH10 NODE_69_length_26709_cov_3.98603, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26709 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 26648 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 26587 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 26526 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 26465 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 26404 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 26343 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 26285 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //