Array 1 272389-275002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019615.1 Listeria monocytogenes strain 10-092876-0168 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 272389 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 272455 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 272521 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 272587 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 272653 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 272719 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 272785 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 272851 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 272918 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 272984 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 273050 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 273116 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 273182 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 273248 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 273314 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 273380 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 273446 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 273512 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 273578 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 273644 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 273710 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 273776 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 273842 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 273908 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 273974 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 274040 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 274106 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 274172 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 274238 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 274304 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 274370 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 274436 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 274502 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 274568 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 274634 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 274700 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 274766 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 274832 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 274898 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 274964 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [274989,274995,274998] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //