Array 1 26438-26902 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000021.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 26438 35 100.0 38 ................................... TACAAGCAGTCTGTTTAGACGAGGCTGCTTGTATGTTA 26511 35 100.0 36 ................................... TGACGTTCAGCGCGTGCAGACAAGAGTCGAAAGCCC 26582 35 100.0 37 ................................... ATTGCGGACATAAACGCATACTGTGGTATATTATGCA 26654 35 100.0 37 ................................... AATACTCCAATTTTGCGCTTTGGCGAGTTTAACCAAA 26726 35 100.0 37 ................................... TGCAAAAAAATCTTAGACATGATCTCAACGTCCTAAA 26798 35 100.0 35 ................................... GTGACAACCTTATACCAGCCCCAAGCCATAAAAAA 26868 35 91.4 0 .............................A.C..G | ========== ====== ====== ====== =================================== ====================================== ================== 7 35 98.8 37 CTTTGGCTTCTTTGAAGTCGAATAAAAATGGAAAC # Left flank : TCAACAACTTGCTGAGGAGGTGGAAACTACCTTACTTGCGTGGTTGGATGCTTGGGAACAATGGGCTTGTGGGGCGAAGGAAACAGCTACAGAGTTAGGTGAGGAGGAAGTTTTGGGTACAAAACCGGAAGATTTAGCGAATTTGTTACGTTTTAGTGCCTTTTTGGTGTCACGGCGACAACAGGAGGTTTCTTGGCAGGGGGCAAGGTGCAGGGTGCAGGGGGAAAGAGGGTTTAGGGATTTTTGCACAGATATGGGAATTATGATTAAGTACCCGTATAATTGGCAAACTGTATCATGTTGATACCATTCGTGGGATAGACACAATGGCTGAAACCCTGATTCTTTCGTTCTATCCCACAAATCACTCTCCTAGTAAGGGTTTGAGGTGTGTTGTTATGGAGATTATTGAAATAAATTCTCATTTATTTAGGGTAAAATTTGCATCCCACGAAAAAGTGTTGTAGGATTGTCTCAGGGTAAGGCTTTCAAGCTGTAGC # Right flank : GGGTTTAGCATTGCTAAACCCCTACAAAAAACTGAAATTATCAACATACAAAAAATATGCAATGGTATGTAATTGAACCCCTCGATATCCTCTTATTTCGAGAAGCCAAACCCTTTTCACCTGGAGAAGGTGCTTGGGCTAAAAGTATCTTTCCTCCCGTACCAACCACAGTTTTTCAAGCCTTGCGTTCCCTAGCAGAAAAAGCCCAAGAACTAGAATTTTTTGGTGCATTTTTACTGCATCATGAACCAGGGAGAACACCAGAAATTTTCCTACCCACACCTAAAGACTTACTCAGTGTCAGCATTAAACAACCAGATGAGGAAGAAACTACCAGCAAAGGTAAAACAGCAAAAAAATGGCAACGTCTCACCTGTTTAGAACCATTAAACCGCCAAGATCCAAAATGGCAACATCTGGGATTTGACCCTGAATATTTTCCAGATCATGGTATTTCGCCAATGGTGACACCTGTACTTTCAGCCACAGCAAATAATCCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGGCTTCTTTGAAGTCGAATAAAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 26691-27234 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000058.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 26691 36 100.0 35 .................................... AGCCGGTCCTTCGGGTTATCAGTCCCGTCGGAACA 26762 36 100.0 40 .................................... TCTTAACTTAAAGAATTCTTCTTCAAGTTCCCAGTAGGCA 26838 36 100.0 35 .................................... AAAAACAGTGTTAGAGTAGAGTTTGATTTAAAGTG 26909 36 100.0 37 .................................... CATAGTTGGGTGAGTGTACCAAGAGTCATTTCCTTTG 26982 36 100.0 38 .................................... GACCGGGTTAGACTGCCAGAACTAATTAGCAATATCAG 27056 36 100.0 37 .................................... TTGCTTTCAACTTTAACCTCATTCCCGCCTTAGCAAG 27129 36 91.7 34 ..............A.....C...........C... GAAAGAAACCTTCTGTTAAAATGGGGTATTCTTT 27199 36 86.1 0 ...C.........TAA..............A..... | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 97.2 37 ACCGCTTCCTTCACCGGAAGTGGAATTAATGGAAAC # Left flank : GAAGCTAAATACTAATAATTGATTGCCACCACACTAGAGTAGGAGGTACAAACTCTAATGAGAAATTCTTATTTAAGGTTTAACTCTTAACCTTCTTGTACCATGCTTTTAATTTAGCATGACTTTTTTCCCCTGTGTAATATATTTACGAAACGTGAGATTCATTAATATATTGCAACAATTGTGAAATGTTTCTTAAAATTGCCTTGAATTTTCAGGTTGTATCTGATTTAAGTGCATACAGCTATATTTTTGATACTAGATTTATTCTGTTGGCCGAAGGTCAGGTAAAATCGCTGAAATGTTGATTTTTTCGTTGCGATAGCGAAGCGTGGCGGTAGCCATACTTCGGTCGCTTGCTGGGTAAGGGTTTCAGGGTTTTTTCATCGCTGTCGGTTAGGGGTTTTGCCTCTTTTTTTCCTGACCTATGGCTAACACCACGCTTCGCTATCGGAAACTGCCTCTAGACACCTTGCTGGGTAAGGGTTTAAAATGGAAGG # Right flank : CCACCTATGGAAATTATTATTGGTTGGTTGTATCCCAAGTTGATGAGTACCTACGGCGATCGCGGCAATGTGATCACCATCGAACGACGCGCCCAATGGCGGGGTTATGATGTCACAGTATTACCCCTGGATCAAAATTCCACCGCAGCAGATATTAAATCAGTAGATATAATTGTTGGTGGTGGCGCACAGGATCGTCAGCAAGAAATTGTTATGCGTGATCTGCAAGGGGCAAAAGCCCAAGCCATGCGGGATAAAATCGAACATGGTACGCCAGGGGTTTTTACCTGTGGTTCTCCCCAACTGCTAGGCAATTATTATGAACCAGCTTTTGGACAAAGAATTAAAGGTTTAGGAATATTAGATTTAGTTTCCGTTCATCCTGGGGAAAATATGAAAAGATGTATTGGTAATTTAGTGATAGAAGTTACAGCTTCTCCGTTAGCCCAGGAACTAGAAGCAATGACAGGAACAAAACCTTATTTAGTGGGGTTTGAAAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGCTTCCTTCACCGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.80,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 729-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000078.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 728 36 100.0 38 .................................... ATTAGGTAGTACTTTACCTACTTCGTAAGCACCTTCAG 654 36 100.0 39 .................................... TTCTTAAATCAGCTACTTTCATACTGCACCTGATAAGAA 579 36 100.0 40 .................................... AATTATGGGGCATTCCTCGTACCAGCATTGCCACCCATTT 503 36 100.0 34 .................................... AAAAAACGTGAGGATCTAGTTAATAGCTTTGGAT 433 36 100.0 39 .................................... TTGAGCATAGTATTTGTACTCAGAAGAGCATACTAACTC 358 36 100.0 36 .................................... TTTAAATTAAGCTTACCCTCCTGGATAAATTCTACA 286 36 100.0 36 .................................... TAGAATTGTGGCTATCAAGCATTGCTGTGATTTATT 214 36 100.0 39 .................................... TAGAGTCAAACTTTTGAATCTCAGTTAGGTCACCATCAA 139 36 100.0 37 .................................... AAGCCTGGCAATTTAGGGCGTTAGTCGAAATAAGGGG 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 100.0 38 GTCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : ATAGATTTATAAATACAGGTGAACAGCTTTGGCTATCTTTAACTCCTGAGAAAATACATTTCTTTGATCCCAAAACCGAGTTAGCAATATTTCCTTAATTAAGTAGGTGGGCTTTAAAAATTGTCGTTATGGCAAGGCAAGAGGCAAGAGTGAAGAAGTTTTCAGAGATTTTACTTTTCTTCACACATTTTGGTTATCTCACGTCCACTTAGGTGACAAAACTTGAGGGGTGGGAGTTCAATTGAACCTCCGGGTTTGATTATTGTTTAGTGATTTATGATACTAGCGTGTGGCGTTGGCCGATAGCGAGGCGTGGCATTGGCCGAAGGTCAGGTAAAATGGCTGAAATATTGATTTTTTCGTTGCGACCTTCGGTCGCTTACTGGGTAAGGGTTTCAGGGTTTTTGGCTGTTGGTTTTTTGTCCTTTTGTTGGTCTTTTCTCCTGACCTTCGGAAACTGCCTCTGGACACCTTGCTACATAAGGGTTTAAAATTGAGGA # Right flank : CTCAGAATAGTTATTACCCACATTCCGCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8839-8585 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000074.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8838 37 97.3 37 ........A............................ ATCATTCTAAGTGAGATTGGTGGCTCTACTACAATTG 8764 37 100.0 34 ..................................... TAACCATCTCCCGTTGTTGCCTGTATTGGAAATA 8693 37 100.0 36 ..................................... TAGATAAATTTGCCAAGAATATATTTGAGCGTTGCA 8620 36 89.2 0 .............................-.AA...A | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 96.6 36 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : TCAGTCTAATTTAGTTTACGAATCCGAACCTTGAAAATATAATATAGATACAATAGCGCCGTAGTTCATGCTCCTTGGAGTCTCTGTACTATGAAAAATCTGGCTTAGTTTGGCAGTTGGAAGACTGTCATGCTTTCTGAGCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAGTCGTTATTTATAACGATGTGGATTTCCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCTCAAATCTTTTTTTTGGCGAACCATAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAACATTGAATCCCTTGTCCAGTATTGATTTGACTCATTTGAAGAGTGATGAATGTCCTCCATTGAGAGCAAAAAAACAGATTTTTTAACAGGTTTGCCAAAATCGCATCTGGAAACCTGTATTGGCAAGGGTCTAGACGGGTGCG # Right flank : TATAGGTTATTGACTTGCATTAACCATTAAAATGGTTGCAAAATAGAAATGATCATGGGAGGGTTGAAAGGAGTGCTGCGATCAAACACATATCAATAATCATAATTTATTGTATTGTGCAGTCAATGTTAAGTTCATGCGACATTAATTTGCGAAAACTTAGAATAATTAAATTGACTCGGAAAAACAACCACCGCGACATTAATTTGCGAACAACGACACTAAATTGCGAAAAGCGACATATAATTTGCGAATGTACAACAATGGAGAATAGGAGACTCGAACCCCTGACCTCTGCGGTGCGATCGCAGCACTCTACCAACTGAGCTAATTCCCCTTATGAGTGCTTACATTAGCAACTCTAGAATACATTTTATATATTAACATTCAGGAACAGCAGATTTCACATCTTTTTCTAAAAAAACTTCCTGTACCCGTTGTAAATCTAAATCAATCAAATAATCAATTGTCCAATTTGCTTGACGTTGCAACATATGGAA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3307-1364 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000093.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================= ================== 3306 36 100.0 42 .................................... TATTCCTGCATTAGCGGCAATAGGAACAAGAGCAGCACTTAA 3228 36 100.0 49 .................................... ATAAGGGACATAGATATGAACCAAGTTTAGATTAGTTCTGTAGACCCCA 3143 36 100.0 41 .................................... GTTGATAGATCAAAGTCAAGATCCTGTAATCTGTTAGCTAA 3066 36 100.0 41 .................................... TGCAGAAATACGGCATTGATCCAAATCTAGCCAAACAGGCT 2989 36 100.0 40 .................................... CATTTGTATTTACAATCGCACCTGCGTCTGCATACAAAAC 2913 36 100.0 35 .................................... TCTTTCAATAACTTAACTAAAGCTTTACCTCCAAA 2842 36 100.0 35 .................................... TTTACCTCCCCCACTTTGTCTACATGCTCCATTAA 2771 36 100.0 38 .................................... TATACAGTAAATCTTCTTCTACTTTGTTATAAGAGTTT 2697 36 100.0 31 .................................... CTGTAAGGTCTAACCCTCTGCACGGGGAGCA Deletion [2631] 2630 36 100.0 35 .................................... AAGATATAGATGTTTTGGTCAAAGTTTGCTAGAAA 2559 36 100.0 38 .................................... TTCTCATTAAGTACCTCTTTTTTGATTTCAGGAATAAC 2485 36 100.0 51 .................................... TGTAGGGTTTAAATAAACCCCAATTATCCTGAAAGAAGTAAGCAGGAAGTT 2398 36 100.0 57 .................................... CTGATAGTCACCCTAGCTTTAGTAGCTGTCTCCATGCTCATACCAATCCAGTCAACA 2305 36 100.0 46 .................................... TAGTGAGTGCATGACAAAACTCTATCCTACTAGCTATTAAGTAGTA 2223 36 100.0 40 .................................... TTAGAATGGAGGTATGTTGGACAGGAAAGAGAGTATGAAA 2147 36 100.0 35 .................................... AACTTAGCTTTGTCATAGCCAGTAGCACAAGCTAA 2076 36 100.0 38 .................................... GAATCTATGTAAGTTAAGTTTGTTGATTTATGTAAATC 2002 36 100.0 41 .................................... GCGGTAACAGACGTTAATCCTCTATACCCTGATAAATATAG 1925 36 100.0 43 .................................... ACAACGGTGGGTGTGATCTCCCAAGATTTAGTTCCTCTGTATC 1846 36 100.0 38 .................................... ACTTCAATAATATGAGTTTAGCGATCTCTAAACTGTTA 1772 36 100.0 36 .................................... TCTCTTTGTACAAGCTACTCATCGCTTCTGAAATGT 1700 36 100.0 38 .................................... GCTCCTCTTTAAGAAGGTAAAGTGCGTGCTTTTCTAAA 1626 36 100.0 37 .................................... TCTTCACTAGCCTTAAATGGATAGTAGGGAAACCAAG 1553 36 100.0 42 .................................... AACTCAGATTTCAATTCCTCCAAGGCTTCTATGAGTTGTGAA 1475 36 100.0 40 .................................... TAGACTTCATCTTTTGTCATCCAACAATCAACCCAGTTGC 1399 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================= ================== 26 36 100.0 40 ACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : TATTATTGTTTTAATTTGTGCGGGTTGCAAAAAACGTACTATCCTATCGCCAGCAGCAGCGTTAATAAAACTCGCTAATGTAACTAAAAGTGTGTTGATAATGACGGCTGTTAGTCCTAGGGGGGCAATTAGTAAAATAATCAGTGTAATTGCGCCGTTGCAGGTAGCAACTCCTAAGTTTCTAACTAATGCTGCACGATGGGAAATGTACATATTTTTAATGTGTGTTGTTGATGTTTTTTAGGTTACTTACTAAGGGATGGTTTATACAAGGGGTTTGATGCGAATGAGGAATTTTTTTGTTGGTGATGGTTTTTTTGCGGCCGGGTAGGGGAGGAGGTGCAAATGTTGATTCTTTCGTTGACCCGGCCGATCTCTTGCTGGGTAAGGGTTTTGGCGTTTTTGATGGGAGGTTTTATGGCGCTGGTTGACTCTGTTTTCAGACCCGGCCGAAAATGGCATCTAGACAGTAGACAGGGTAAGGGTTTATAATAGGGGCT # Right flank : CAAACAACAAAAATAATAGATAAGATCCCCGACTTCTGTGATGAATTCTCTGTGATAGAGAAGATTTGTCTAAGAATGCGGGGATCTTTTGCATCAATATAGATACTAAAAATGACATTTTCTCATTCGCATGAAAAGTATTGAAAGATAACAAAATAGAGAGTAAGGTGTGATCCGTGATGTAAATAATACAAGCGTCAGGGTGAGGAAAAATCTACCATGTCACAAGAGAACAAAAATCAAGAACTGTTACGACAATATTTAGATTCAATAAATGATCAGGAAGAACGCAAAAAAGCCGAACAAATTGTGCGTCTTTCTCGGTTAAATATCGGTCTTGCTGTGTTATTTTCCATGCTAATTCCCATAGCAGGATATTGTTACACCCGACGCTGGAAAGCTTTCTTGTGGATGTTGTGCAGTTTTGGTTTAATGGGGGCAATAATTGGAGGATTTTCTCGTACTGAAAAAGAAGCCATGGAAAGAGCTTTTACTATAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 22138-23877 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000096.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================= ================== 22138 37 100.0 35 ..................................... AAAAAATTTCATCAGTGGAAAACAGCGCAATTAAA 22210 37 100.0 35 ..................................... TGACTTTTGGATCTCTTTAATTAAAATATTTGATA 22282 37 100.0 35 ..................................... CAGACAATTTAATACTTAGAAAAATCCCCCTTGGC 22354 37 100.0 34 ..................................... GAATATGTCTTGTTTGTACATCTAAAATTATACC 22425 37 100.0 35 ..................................... AAGGTGATAGATGGTTATGTTTTTTTCAGCACCTC 22497 37 100.0 35 ..................................... TTTTTCTTGTGAGAGATGATAAAAAATACTTGCGT 22569 37 100.0 36 ..................................... CGCACCTTTTTCGGGTAAGTGTTCCCACGTGATCAC 22642 37 100.0 35 ..................................... TTTACTTACTTCGGTTGACGATGTGAGTAAGTGAT 22714 37 100.0 33 ..................................... ATGTATTGATGGTGTCTACTGTGTCTACTGTGT 22784 37 100.0 33 ..................................... GTCTATATCGTGTATTGATAAGTGAGGGTTAAC 22854 37 100.0 43 ..................................... GTAAACACCACAAAACCTTGTAAGACCTGCGGGCAAAGGATAG 22934 37 97.3 35 ...............T..................... CTGAGGACTGGTTAGAAGACCGAACTGAAACATTC 23006 37 97.3 33 ...............T..................... TCAAAATCAATATTTATTAATACTATAGAAAGA 23076 37 97.3 34 ...............T..................... AGAACTACACGATACTGCATATTTTCCTTAGTGC 23147 37 97.3 34 ...............T..................... AATATATTGCTGTAGCTTTTGTTTTCTATCGGCG 23218 37 97.3 36 ...............T..................... GATCAACTGGTATAAATCTAGAATTTCTACTCAGAT 23291 37 97.3 35 ...............T..................... CCCAGTATGGGATTAATCAAGACTTTAGATGCGGC 23363 37 97.3 34 ...............T..................... AAGCTGGCGGCACGTCTAACTGCATTAAGTATGC 23434 37 97.3 34 ...............T..................... CCATAAACATCGTTAGCTATGTAAGGCGTTGTGT 23505 37 97.3 36 ...............T..................... CAGCAGCTTTAAACTTGTGGGGTATCCTATCACCAA 23578 37 97.3 35 ...............T..................... CAATTCCTCAAATGGCATTGTTACACCGCCCGCTA 23650 37 94.6 87 ...............T..G.................. CAATTCCTCAAATGGCATTGTTACACCGTCCGCTAGTGACGAGGATTGAAACCAATTCCTCAAATGGCATTGTTACACCGCCCGCTA 23774 37 91.9 30 ..............CT..G.................. ATCCCAAAAAGCAGGTAATCAGATATAATA 23841 37 91.9 0 ...............T..G.........A........ | ========== ====== ====== ====== ===================================== ======================================================================================= ================== 24 37 98.0 37 GTGACAATTACTAATGAAAGTAATTGAGGATTGAAAC # Left flank : AATCATGATTAATAGGTTCTGAATTGATCTGAGAAGTCGGTGATCTGGTCATAGAATTAACTTAAACATTACAAGGAATAAAAAATCATGACTGTACATTTAGACCCTACTAAAAAACACGATGCTATTTTATTATTTGACTGTCTTGATGGTAATCCCAATGGTGATCCAGATGCAGGAAATCAACCGAGAATTGATCCCCAAACTAATCAAGGTTTGGTAACGGATGCCTGTTTAAAACGCAAGGTGAGAAATTATGTAGAGATGGTAGGCAAAGATGAATCTACACCAGAAAAATATAAAATATTTGTGGAAGAAGGCAGTGTTTTAACACAAACTGTTAGTCGTGCTTATACCCAAGTAGGATTACCAGAAAAAACAAGTTCAGTAGAAGATCAACAAAAAGTAGCTGATTGGATGCAGCGTAATTATTACGATTTGAGAATGTTCGGCGCTGTTTTAGCGTCGTGAACGAACTGGAAGTGTCAATAATTAATTCT # Right flank : CATAATATTGCTCCAACTCGACGCGGAAAACATAAAATATTCATTGGTATGGCTCCCGGTGTCGGTAAAACCTACAGAATGTTAGAAGAAGCACATCAACTTAAACAAGATGGAATTGATGTTGTCATTGGCATTTTAGAAACCCATGGACGTAAAGATACGGCACAAAAAGCTGTAGGATTGGAAATAATTCCTAAAAAAACCATAATTCACAAAAATATTAACTTAGAAGAAATGGACACAGAGGCAATTTTAGCCCGTTGTCCCCAATTGGTTTTAGTTGATGAATTAGCCCACACAAATGTACCCAATTCAGCTAGAGAAAAACGCTATCAAGATGTGGAATTAATTTTAGCAGCCAACATAGATGTTTACTCAACAGTTAATATTCAACATATAGAAAGCCTAAATGATTTAGTTGCAGAAATTACAGGGGTTGTAGTTAGAGAACGTATTCCCGACCGGTTGCTGGATGAAGCGGATGCAGTGGTTGTAATTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATGAAAGTAATTGAGGATTGAAAC # Alternate repeat : GTGACAATTACTAATTAAAGTAATTGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 10389-11590 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000141.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 10389 36 100.0 42 .................................... GAGTATGTAACTTTTCAATTGCACAGGGATCTCCATCCTTAC 10467 36 100.0 35 .................................... GATATGCTTTTTATAGCATAATCTTCATCTATTAA 10538 36 100.0 39 .................................... TTGATTGAACTCTTGATGTATTGCTTTGATATTCTTTAA 10613 36 100.0 47 .................................... TCCCTTTACTACTTCAAAAGTTAAGTGTTTTGTTTTATAAATCTTAG 10696 36 100.0 36 .................................... TTAAGTTTAGAGACAATAGAAAATCTGCAAGATCAC 10768 36 100.0 34 .................................... TTCTTACAGAAGTTTGATAAGTTTGGGAATATGT 10838 36 100.0 38 .................................... CATTACTAAGAGTTCATTAGAGTAGCCTGATGTGATAT 10912 36 100.0 36 .................................... AACCATCTTTAGTGTAGGCAGAACATAGTAAATAGT 10984 36 100.0 36 .................................... TTAAATTTCCTCTAATAGTTGTTGTAGATATGCGAT 11056 36 100.0 41 .................................... CTTTGGTTCCTCAGCAGCAGCCTTAGCAATCTGATATTTGT 11133 36 100.0 37 .................................... TATACTTAGGATTGTTAATAGTAGCTAATAAATTCTT 11206 36 100.0 35 .................................... TATACTTGCCCAAAATTCCTTTTCTGCTTTAACTG 11277 36 100.0 36 .................................... AAACATGATATAATACTCCTGTAAGATGCTTTTTTG 11349 36 100.0 32 .................................... TTTAGTACCTGTGCCATTCCCTGCCCAGGAAT 11417 36 100.0 31 .................................... ATTAACGCTATCTCAAGCGGATGCTTGAGAT 11484 36 97.2 36 ...............A.................... GCGCCGTTCCCCGGTTCACCCGGATCGCACACCCCT 11556 35 80.6 0 .A...C............G...........-T..TG | ========== ====== ====== ====== ==================================== =============================================== ================== 17 36 98.7 37 ACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : GATCAATTATTGGTTAAATAGCAAGATTGTCCTCAGAAGTCGGGGATCTTTTTTTCCCACACACAACCCAGATCCCCGACTTCTATGATCAATTATTGGTTAAATAGCAAGATTGTCCTCAGAAGTCCGGGATCTTTTTTTCCCACACACAACCCAGATCCCCGACTTCTATGATCAATTACCGGTTAAATAGTAAGATTGTCCTCAGAAGTCCGGGATCTTTTCTTCCCACACACAACCCAGATCCCGGACTTCTATGATCAATTATCGGTTAAATAGCAAGATTGTCCTCAGAAGTCCGGGATCTTTTTTTCCCACTGCGGCCGGGTACGCTAGGAGGTGCAAATGTTGATTCTTTCGTTGACCCGGCCGATCTCTCTCTGGGTAAGGGTTTCAGGTGTTTTGACTGGTCGGTTTTTGCTTCTATATCCTCTGGGTTTGATACCCGGCCGAAAATGGCATCTAGACAGTAGACAGGGTAAGGGTTTATAATAGGGGCT # Right flank : GGAGACTTGCTGCTGTGATTGCAGCAAAATTTTCAGTTGTACTGATCTCTGAAGTATTTTTTAATAAAACTTCATTTTTGTTAACAAACCTACCTAAAACTTATTAAACAAGTTGAATTTTCTGTTTGTTTGTAACAGTTAATTGATATATGTTGTCAAAATCATTCTTTTAGTTAGAAACTAAGAAGACAACAAAGCAATTATTTTTATGAACGCTATTTCTAATCTGGAATTTAAACGGTCAACCTGGCAAACCGCCATCATATTGACCTTAGGTTTTTGGCTGAGTGGGAGTCTAGTTTTAGATTGGGTAATTATGCCTAGTATGTACTTTGCTGGCATGATGAAAGAAGCTAGTTTTGCCACAGCAGGTTATGTGGTTTTTTGGAATTTTAACCGCCTAGAATTATTAGCTGCCGGCGTGGTTTTAACTTCTGTCTTGGCCATTAGTAAAACACAATCTCCTTGGCGTTGGAGTAGTATCATGTTATCTGCACTAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1921-1669 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000152.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1920 35 100.0 39 ................................... TTTCCAAGGACTGCTAAACCCATTTGTCGCGTTCCTCGA 1846 35 100.0 36 ................................... CTCTCACCACGGAGGCTGAGAGAATAACAACACCTG 1775 35 100.0 37 ................................... TGGACGGGAGATCAGAGAGTGGCGGTATGTTTTTTTA 1703 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 100.0 38 CTTTGGCTTCTATGAAGTCGAATAAAAATGGAAAC # Left flank : GGGTAAGGCTTTCAAGCTGTAG # Right flank : TTGGGAATAGCTACTATAAATTAGTTATTCCCTGTTTTTTTTATGAATAAAATTTCAACAACGATTTAATCTATAATTAAAAACATAAATTTTTATGATAAATCTATGAGTTTCGACAACATTTGTAAGCTATTAGCAGAAAAATATCCTTTGGATTTTGCCCGGTGGTTACTACCAGAAGAACCGCAAAAAATAAGAGTCTTAAAAACTGAACTAGGTATTGAACCAATACGCGCTGATTTTCTCACCTTCCTGCAAACAGAAAATCAAATATTACACATTGAATTTCAGACCTTAGCAACCTCAACAATTCCTATTCCTTTACGGATGCTAGATTACTATGTCCGATTAACACGCCAATATCAAATTTCCGTCACCCAAGTAGTAATTTTCTTACAAGAAACAAACCACGAAAACGCTTTCACCGAAGCATACATCAGTGACACAACCACTCACCGCTACCGCGTCATCAGAATGTGGGAGCAAGATTCAACCTTCTT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGGCTTCTATGAAGTCGAATAAAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1884-3285 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000185.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1884 36 100.0 44 .................................... ATCCTCAATATCTGCAAAACCTTCTATCGTTGCATCCTGTGGAG 1964 36 100.0 35 .................................... CAAGATTCTAGTCAGTCATGGTGACGGTATTCTTA 2035 36 100.0 37 .................................... GTTATTGTAGTAGCACACTTATAAAACAAAACAATGA 2108 36 100.0 31 .................................... TGCTAGTTCTTTCATTGTCGCGTCGTTAATA 2175 36 100.0 34 .................................... AGTAAACTTAGTTTTTTGTATATCTTTACTAGCA 2245 36 100.0 35 .................................... GTTGATTTTGACAGTCGTGTTAAGGGTGGTGCTGG 2316 36 100.0 35 .................................... AGGAACAGATACAGCCGCCGCGCTAATAGTAACTA 2387 36 100.0 35 .................................... TTAGCTAAATAGTCAAATAATCGGCTATTTTCTTG 2458 36 100.0 37 .................................... TTCAGGTGTGTTGTCTTCTACAATCGCTTTAGATTCA 2531 36 100.0 35 .................................... TCTTTGTAAATTGAATCTTGGGAAAGGGGATAACA 2602 36 100.0 33 .................................... ACGGAAACGTTTTAGCAGGAAACTGAAGACTTA 2671 36 100.0 34 .................................... TCAAGATCAGCCAGCACCCTATTAGAAGCATGTA 2741 36 100.0 36 .................................... AAATTAGTTATTAATTTAGCTCATAATGACTTTGAA 2813 36 100.0 40 .................................... ATTAAAGATCATCTCTTCATCTGGAGCGAGGTCTAAAGCT 2889 36 100.0 32 .................................... AATTTTGTATTAGGTTGATTTTGTTAACTTAC 2957 36 100.0 41 .................................... TAGAATCAGATTACTCATCCACTTTACTAAATGATGATGTA 3034 36 100.0 37 .................................... TAGGTTGTACAATAGTTTCAACTTTTATTTTAGTTTT 3107 36 100.0 36 .................................... TTTTTTGCGTTCACCAGTCAATCCAGATCCACTACC 3179 36 100.0 37 .................................... AGGGCAACACCGCTCCATCGGACATCCCCTTCTGAAA 3252 34 86.1 0 ...........................C.--...CT | ========== ====== ====== ====== ==================================== ============================================ ================== 20 36 99.3 36 GTCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : TATCGAATTGATTGATTTTTTCTGATGTTTATGTTATGTTTTTGTATGTGATTTCCTACGATATTCCTGATGATAAAAGACGTAAAAAGATAGCTGATTTATTAGAAGGTTATGGTCAGCGTGTACAGTATTCTGTGTTTGAATGTCAGTTAAATACGGAAAAGTACAATGATTTACGTCGGCGGTTAAGGAAGATTGTCAAGTTAGAGGAGGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTCTTTCCCAGGTGGAAAGTTGGGGGGTGGGTGTGCCTGTGATTGAACCTCCGGGTTCGATTATTGTTTAGTTTTTCCGAAGGTCAGGTAAAATGGCTGTAATGTTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGGGTTTTTTCCCGCTGTCGGTTGGTGGTTTTAACACTTTTTTTCCTGACCTTCGGAAACTGTCTCTGGACACCTTACTGGGTAAGGGTTTAAAATTGAGGA # Right flank : TACGCAAAATAGAACAAAAGTAGGGGTAATTCATGAATTACCCCTACTTTCCGTGACCTTTTGCGTAAGCCAAATGAACCTCGCACCTGCGTCTGCATACAAAACACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAACTCTTTCAATAACTTAACTAAAGCTTTACCTCCAAAACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAACTTTACCTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 7907-4645 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEM01000178.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7906 37 100.0 35 ..................................... ACTCGCTAACATCCAAAAAATCGAGTATAACAAAG 7834 37 100.0 34 ..................................... ACGGATTGCTAGAAAATTGGAAAGTGAAATAGTA 7763 37 100.0 34 ..................................... TTCCACTGATGAAATTTTTTGCAAGTTCTGTAAA 7692 37 100.0 33 ..................................... CTAAAGAGTTTCTTGATATCTGGTTGGGTTAAC 7622 37 100.0 33 ..................................... TTCATAATTCCCCTTTAGATTTTCAAATCCTAA 7552 37 100.0 37 ..................................... AGGGAAAGATTTTTAAATAAACATGAAGCCCGGTATT 7478 37 100.0 37 ..................................... AAGTGCAGTAAGCATTTCAGCCGCTATAATACATAGC 7404 37 100.0 34 ..................................... TCTTACCAAAAATTCAACCCAAACATAGAGGATA 7333 37 100.0 34 ..................................... CTTACTCAATTAACCAAAATGGAAATTAAAAAAG 7262 37 100.0 35 ..................................... ATTTTTTCCCCTTGACGTTGTATTCTAACGGACGC 7190 37 100.0 35 ..................................... GCGTGCAAGCGTTTAGCAGACTATGAAGGATTAGA 7118 37 100.0 35 ..................................... TTAAAGTTGGTAGTTTGAATGAAAAGATGAACCAA 7046 37 100.0 32 ..................................... GTCTACAAACTGCATGAGTTCTAATCGGAAAA 6977 37 100.0 35 ..................................... TTTCTTGGTGAGCGATCGCCAGACGGAAACACCAG 6905 37 100.0 32 ..................................... TTTAAGGATGGTAAGAAAGTCTTTAAAGAAGC 6836 37 100.0 37 ..................................... AATCTGGTGTTTTAAATCTGGTGTTTCCATCTGGCGA 6762 37 100.0 33 ..................................... AAAACATAATCCTATTTGTCTTTTATTGCCTAA 6692 37 100.0 34 ..................................... TTTTGAGGCTGTCACTCATGGTTACTGCCACGAC 6621 37 100.0 34 ..................................... CTCTGAGTTGCGCCACTAATTCAGAGTCTCTAGT 6550 37 100.0 34 ..................................... TTATGCTAGATTATTTTAATCAAATCAATATCTA 6479 37 100.0 34 ..................................... CCCATGTTTAGTGACTCGATTAAATATGAAGAAT 6408 37 100.0 32 ..................................... GTCCCCCCTTAACCTATTGATATGCTGTACAA 6339 37 100.0 38 ..................................... CAAAAAATGAATCATCATTCGCAGAACACCAATTTTGA 6264 37 100.0 37 ..................................... TTAAAGCAAGTGCAACATCATCCAAATGTTTTATGGC 6190 37 100.0 35 ..................................... TATTTCTTACCTAATAGTATTAATGCGAGTTGTAC 6118 37 100.0 34 ..................................... GTTTAGCAGCTAAAGACAGCACACATAAGGCTTT 6047 37 100.0 37 ..................................... AGTTCCAGGTTTTAACTTGCCATTATCTTTCAACCAA 5973 37 100.0 34 ..................................... GTGAAGCTTATTTTTTATGTATCCTTCTTTACAG 5902 37 100.0 33 ..................................... CCGTATCAATCTTAAAGCACGGATGCAAGAAAA 5832 37 100.0 34 ..................................... ACTTAGATGGTTTGGGCATCCCCACGCCACCCAA 5761 37 100.0 39 ..................................... ATCTGGATGCTTGTTTTTTAAAAAGGTAAATTTTTTGGA 5685 37 100.0 35 ..................................... AAATCATCAACTTATTTTGAGTATGATTTATTTAA 5613 37 100.0 33 ..................................... CTGACACAGATAACCTCAAAACAACCCTATAAG 5543 37 100.0 33 ..................................... CAAAAATAGCTAAGTCTCCACTAGAAGCGAGTA 5473 37 100.0 34 ..................................... CAGGTAAAGGTATCGCCGTTAAAAACTTACTTAA 5402 37 100.0 36 ..................................... AAGACACCATCACAGAAAATAATATTATGTGGTTCG 5329 37 100.0 34 ..................................... ATTTCTTTATCTTCCCATTCAATTTGGGAAATTT 5258 37 100.0 37 ..................................... AACGTCTAAAGCTAAGGTTTGCGCCGATGAGCTTAAC 5184 37 100.0 35 ..................................... AATAGCGTTATGTGATGCTGTACTTAAAGATCAAA 5112 37 100.0 36 ..................................... CTCTCAACTGGACTACTAACTCACTGTCACGAGTGC 5039 37 100.0 37 ..................................... CCTGTGACAACTGTGACAAAATCCTGCTCAAACTTGA 4965 37 100.0 34 ..................................... TCTACTTCTTCTAGCGAATAAACTACGGCGTGTC 4894 37 100.0 34 ..................................... TCTACTTCTTCTAGCGAATAAACTACGGCGTGTC 4823 37 100.0 34 ..................................... AAACACAATAGCCAAACGTATTCAATCCAGACTA 4752 37 100.0 34 ..................................... TTTTTGAGCGTATCGCTGCTTTTTCGGATCTTGG 4681 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 46 37 100.0 35 ATTGCAATTTCTACTACTCCCTATTAGGGATTGAAAC # Left flank : TGTCGAATGTTGTCTCCTGTGGTGGAAGAGGTAGCGGCAGAATATGACGGACAAGTAAAGGTGGTTAAATTAAATACAGATCAAAATCCTACTGTGGCGAGTCATTATGGTATTCGGAGTATCCCAACTGTGATGGTGTTTAAGGGCGGACGACAAATTAATACTGTTGTTGGGGCTGTACCTAAAACTACTTTATCGGACGCTTTAGATAAGTATGTGGCTTCTAAGGCATAGTTCATGATATGGGAATTTCTCTGGTAGATCTGTTTTTTATGCGCGGGTGGGTGGGTGTAAAAAACCCCGGTTGTAAAAAAATGGCTGAAATGATTTCTCTGCAAGGTTTTTATACATTTTTTGTTAGTCAACCATCCGCGCACCTTATACAGCAAAGGTTTTGGCTATTTTACCTCTTGACACAATTTCTGAAATGGACTATTATAATATCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACTCCGCT # Right flank : ATTTCAATGGGGGTCGAGCGATTCCGTGACCCCAGAGAAATGGCTCAGTTTTACAAGCAAGATCCAGAACATTTTAATTTTGTTTTAGGAGTGATTTTACATGAAAATTAAACTTGAATGGTGTCCATACGGTGACATAGGCAGAAAAGAAATAGCTTGGGCAAGCGTTGAGGTTGAAACGGAACATAACGATCCTTTTCTTCGCGTAAATCCTATCGTGCGGGTCAAAAGCTACCCAACGGCAAGCGACGAAAAAGACAAGCTAAAAGCCCTTGCGGAAAAAGCAAGTACCAAAAAAGAAGTAGAAGAGATGGCTTTAAGGGCTTGGAATCGAGAGATTGAGGTTTCGATTGGATTTCAGGGGCATGGCTATTCCACAAAAAATCCGAACAACCTAGACCTGTCAGTGGCCGTTTATAAGCTACCTTCTTTTAAGGTTTTAAGTATAGAAGGCAATGAAGATTTTCTTTCCAAAATCCCGCCTATTCCAGAAGGATGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTACTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //