Array 1 9201-7355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJRA01000029.1 Methanosarcina mazei strain 1.H.T.2.3 scaffold58_1_size26214-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9200 37 100.0 38 ..................................... CTCTCCTATTAGACGGAAACCGCTTTACTGGCGAATAT 9125 37 100.0 36 ..................................... AGTTTTGTATATACCCCTGTTCTGATTTCTGCCCAT 9052 37 100.0 33 ..................................... TTCACTGATTGGAAACATAGAGAAATAAGCTAT 8982 37 100.0 36 ..................................... CTCCATCTCCTGCGGTATCATGGATATAACAGTCAT 8909 37 100.0 37 ..................................... TAATATAGATTGCAGGATCAATAACGCAGCCCGTATC 8835 37 100.0 36 ..................................... GGAGTTTAGGCCAGATCTTGAGAAAGTAAAAGATAC 8762 37 100.0 34 ..................................... ATAAATGAGAGTTTTGGCGGTAAAACCAAAATAT 8691 37 100.0 36 ..................................... AAAACCGCGTAAGCTGTCCCGTTATCAAGCTTAATA 8618 37 100.0 35 ..................................... ATGAAATTGTCATGAATATAGGCATGGTTGCTATC 8546 37 100.0 33 ..................................... ATTATTTCCCTTGTTTACATATACCCCGGGCCC 8476 37 100.0 37 ..................................... TGAAGCCTTCAATCTCGTAATCATCTAGTTTAGTAAT 8402 37 100.0 33 ..................................... ACCTCGTCCTGCATGGCCTTGATAGTCTGCCAT 8332 37 100.0 36 ..................................... AGAAATCAAATCCCGTCGTAACAAAAGACTGGCTCC 8259 37 100.0 35 ..................................... GATGAAGGGGCTCAGGATAGAATAGATCAAGTTGG 8187 37 100.0 36 ..................................... AGTAATGCAACCATTTTCAACAGTCGGAAGCACCAT 8114 37 100.0 37 ..................................... GGAATAATCACTCATTTTATTATATGAGGAAAGTAAG 8040 37 100.0 33 ..................................... CGTTGTTCTGAAGGTATCCCCGCTTAGAGCCAC 7970 37 100.0 36 ..................................... GGAACTGTCGGCACGAATGATGAAAACGACATCTAC 7897 37 100.0 35 ..................................... TCTATCTTTCATGCAAGGCACACAGGAACTCTAAC 7825 37 100.0 35 ..................................... TATGTTCGGGCTTGCTTTTCATGCGAATATACTTT 7753 37 100.0 34 ..................................... CGAAACTCCAGGAATGAGGCCTCAATCCAGGAGC 7682 37 100.0 35 ..................................... TCAAAAGGCCAACTACCCACAAGTAAAAGCAGCAG 7610 37 100.0 38 ..................................... CTGTCGGTTGTTTGCTTCGATTGTCGCATACCCCGATT 7535 37 100.0 33 ..................................... ATTCTGACAGGAGTTACATCTGCCCCCGATACG 7465 37 100.0 37 ..................................... TTTAAAGTAAAACACGAACGCATGAATGCACTAATAG 7391 37 83.8 0 ..T.....T.A.....................A.G.G | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.4 35 ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTCATTTTAAGTATCAGGTTTCCCGAAGAAAAGCGGTCAGGATGCAGGCAATATTACTACGAAAAGCTATCACAAACGAACTTCCTATGTATTATCCTCTGGTGTTTAAAAGATGAGGCTAGTAGTTACATATGATATAAGCGACAATAAGATTCGTAACAGGGTTTATAGAATCCTTGAAAAATACGGTGCATGGAAACAGTACAGCGTATTCGAACTTGATATTACTGCAGTGCAACGTGTAGAAATGGAAGATGAAATCAAAACAGAAATTGAGTCTACTGATAAAGTACGCATCTATAGCCTTTGTGACCGTTGCGTAAAAAATATTGTAGACATCGGCCAAAAGACTCCAGATAAAAAGTCAAACATTGTTTAACAGCTTTTTACATTGATGTTTATATATTCTCTGTACGCAAGAGGTTTGGGAATTAATGATTATTTTTTGAGGTTTTAGAAAGGGTTATTACGAAAAAAAACCCTTATTTTCATGCC # Right flank : CCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 31585-26299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJRA01000075.1 Methanosarcina mazei strain 1.H.T.2.3 scaffold15_1_size69386-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 31584 37 100.0 37 ..................................... TAAAAAACCTAATGATATTCATGCCACCACGACACGG 31510 37 100.0 36 ..................................... TAGAATGGGTACTAACAATACTGATAGTTTTCACAC 31437 37 100.0 36 ..................................... TCAGGAAGAGGGGTTCACTCATGCTCCTGTTATTTA 31364 37 100.0 34 ..................................... ACATATTGAGAATATTGTGCTCTCCGTAAATAGT 31293 37 100.0 35 ..................................... TAGACCGACTCTGTTTTCACGACATCCGTGTCAAA 31221 37 100.0 39 ..................................... AACAGTATCGGATACCGTTTTTGTTTACGCTCCAATCGT 31145 37 100.0 37 ..................................... TTTTTAGTAAGTATCATGCTTTCAGGGAACAATTCAA 31071 37 100.0 36 ..................................... TGAGGGGAAAAAAGAGAATATCCAGAGAGCTCAGGA 30998 37 100.0 37 ..................................... AAAAAAAGAAATTAGTGTCCCATCATCTCAATTCTCA 30924 37 100.0 36 ..................................... AATTTGTTGATGAAATCCCAAGAGGAATAACAAAGT 30851 37 100.0 36 ..................................... GCTCTCTTTTTGGGGTCCCTCAAGAAATTCAATACC 30778 37 100.0 35 ..................................... CCCGTTCCTGTACCTGCTTCTATCTCTACACTCTC 30706 37 100.0 35 ..................................... TATACATCTTACACCAACGCGTAAGATAAGTTTTA 30634 37 100.0 36 ..................................... CCAATTCCATTCTCTACACGATCCATGTTTTCAGGT 30561 37 100.0 37 ..................................... TTGACATACAGTTAAATAAGACGTTTAAGTATATTAA 30487 37 100.0 35 ..................................... CCCGATTCATAAAATAATTCATTAATATATATTTC 30415 37 100.0 36 ..................................... AACATTTTATTCCCTCCAAGACAATCCAGCATCGAA 30342 37 100.0 34 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACT 30271 37 100.0 35 ..................................... TAGTATTAAGTACTAGTACTAGTACTTAGAAGAAA 30199 37 100.0 36 ..................................... AATATTTTGTATGCATTTATGTATACAACATGCCAA 30126 37 100.0 36 ..................................... TTGAATATCCAACCACAAACCACACATTCAAATCCC 30053 37 100.0 36 ..................................... ACTTTTTTCTGCGAGGTATGAACATGCCTAAATATC 29980 37 100.0 35 ..................................... AGCGATTCCGCGATTGATTCAAAAGCAGTTAATAA 29908 37 100.0 39 ..................................... CAAGTATAGCAGCCCATCTCGTTTTCTTGAACGCGAATG 29832 37 100.0 35 ..................................... TATACTGCATCCGAGACAATGTTAATAAGTATAGA 29760 37 100.0 36 ..................................... ATCTATACAGAGGTATATTGTGGAACGTTGAGTTTG 29687 37 100.0 35 ..................................... CTGTCCTCAGTCCGTGCCTTCAGGAGGATCCCGGT 29615 37 100.0 37 ..................................... GTTCTTGGGTCACACCCATAGCATGTCTTCTAAGTTT 29541 37 100.0 35 ..................................... GAAACTATACAGAGCGTAATACAGAGAAGGAAGAT 29469 37 100.0 37 ..................................... ATTGTGCTCAAAACATTGTAAGTTTTATTTTCATTTA 29395 37 100.0 35 ..................................... CCCATCCTATAAATCCACAAAGGACATTGAGAAAA 29323 37 100.0 35 ..................................... TAATAAAGTCGCTGCTTTCCGGGCTTGTGCTGCCT 29251 37 100.0 35 ..................................... TATATCATTGAGATATAGTAAGATTAAGTTAAAGT 29179 37 100.0 37 ..................................... TCTTCGATCCAGACCATAAAATCCGAATCTTCTAGTG 29105 37 100.0 35 ..................................... GTTCTGCTTCATGCCCGACCGCATAAATACGAAGT 29033 37 100.0 37 ..................................... TGGAGTGTTTCACCTAAACTCTTCTTACAGAATTGGG 28959 37 100.0 35 ..................................... ATTTCCATCCTGTATTTTGGGAGGAGAATATCACA 28887 37 100.0 38 ..................................... CGCTCAGGAACTCTCTAAAAAGCATAACATGACAATAG 28812 37 100.0 35 ..................................... CTGTGCCAACAACCTGATCTACCCTGTGCGAAGTC 28740 37 100.0 37 ..................................... ATTTATGACGGGGCAACTCCGCTTTTAAGAAATCCAA 28666 37 100.0 42 ..................................... GAAGCTGAATAATTAGCAATTGCTTTTGCTACGCCTGACTTT 28587 37 100.0 37 ..................................... TCTTCAAGGCACAGAACATAATCATTAAAGTCTTCAA 28513 37 100.0 37 ..................................... CAGAATTTTGAGGACCTATTTCTAACACTAGCACCAC 28439 37 100.0 36 ..................................... TTCAGCGATGAATATGGAAAATACAAATTTGACCTT 28366 37 100.0 40 ..................................... CCTACTTTATCACCAGGCTTTCCAACTCCGGCGAGTTCTT 28289 37 100.0 35 ..................................... CACAGGCACCTACCCTTGTCATAGAGTTTCGCCAA 28217 37 100.0 35 ..................................... CATATTTTTGCACCGAGCCAGTAAAAGAAACATTA 28145 37 100.0 36 ..................................... TATAATGTCAAAGAGTATCCTATTTTGTCCTAGAAT 28072 37 100.0 34 ..................................... ACCCTGCTTTCGGGGCTGTAAAACTTGACGGTAT 28001 37 100.0 34 ..................................... TGTAATAGTCGAGTAAACAAACGCATAGGCAAAA 27930 37 100.0 35 ..................................... TGAAAATATAATAACTGCTTCTCCCTCTGGAAATC 27858 37 100.0 35 ..................................... CTTCACGGAGAAAGATAAAGCCCGGTTAATGGAGA 27786 37 100.0 35 ..................................... TCCGAGGTTTTGATATGGTCATGCCGGCAGAATGG 27714 37 100.0 36 ..................................... CTCAAACGCTCATTAAAAGGGCTTCGCTAGATGAAT 27641 37 100.0 36 ..................................... AAAAAGCCGTACATCGTAATGGTGAACTAATAGAGT 27568 37 100.0 38 ..................................... GTTAAACCCATGCTTTTAATAACCTTTTCAGCTTTCTT 27493 37 100.0 35 ..................................... TGTATGTCAATTCGGGAGTTCCGAAACTTGAAATT 27421 37 100.0 35 ..................................... AAAGCTGTGTAATGGTGTATAGTTATGTACTATAG 27349 37 100.0 37 ..................................... TAGGAGTATGCAGCATTAGCGGGTTAAGTGTTGCGGG 27275 37 100.0 34 ..................................... CGTCAACAACGACTCTTGATACGATTATTTTTGA 27204 37 100.0 37 ..................................... TAACTCCTTATGCTCTAATAATCGCAGACGAAACAGT 27130 37 100.0 34 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATA 27059 37 100.0 35 ..................................... TTTCAACCCCTCCTTACAGACCATCGTCAGTGATT 26987 37 100.0 35 ..................................... TTTTAAAGTCATCTTCTGGAAAAACACCGACAACT 26915 37 100.0 37 ..................................... ATTCCGTACATGCATTGAGTGCGGTTGGATTATTACT 26841 37 100.0 36 ..................................... CAAACTCAGTCGTTTTAGTGTACTGAGCTTCATAGT 26768 37 100.0 34 ..................................... TAATCGTAACCCTTGCGCCCGTTCATGATCCAGA 26697 37 100.0 35 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAA 26625 37 100.0 36 ..................................... ATAAACACTGTTCCGGATCAAATCCTTTTTGATAAA 26552 37 97.3 34 .....C............................... TATCACTGGTCACACTCTTAATATTTGGTGACGT 26481 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 26408 37 81.1 34 GG...A..AGT..C....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA T [26393] 26336 37 81.1 0 .G...A..AGT..C......................G | T [26320] ========== ====== ====== ====== ===================================== ========================================== ================== 73 37 99.4 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : TTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //