Array 1 2459390-2458583 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARX01000001.1 Chromobacterium sp. Panama Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2459389 29 100.0 32 ............................. CGCGAGCAACGCCGGCACGACGAGATTATCTG 2459328 29 100.0 32 ............................. CCGAGTTCTGGCAGCGCGTTCAGACGGGCAAG 2459267 29 100.0 32 ............................. ACCTTTGGCGCAGCCCGCGCGGAGATGATCGC 2459206 29 100.0 32 ............................. ACCAGTAAGGCGGCACAAAACGGGCCGTGGGT 2459145 29 100.0 32 ............................. CGATTTCGACTATCACAGCATCGCCCGTAACG 2459084 29 100.0 32 ............................. GCGCTAGGCTTGACGATGGTAAGCGTCTTTTT 2459023 29 100.0 32 ............................. CATTCCGCCTATCTCGTGGCGATGTTGCAATT 2458962 29 100.0 32 ............................. GATGTCCGCAATGGTGTAGCGCGCAACAGGTG 2458901 29 100.0 32 ............................. TAAGAAGCCAGCCAGGAGCTAAATTCCTAGCA 2458840 29 100.0 32 ............................. GGCACTATGATGTTTGATCGCTCCGGGCCGCT 2458779 29 100.0 32 ............................. CCGACGCAGGTAGAGATGCCGACTCGCTGCAG 2458718 29 93.1 32 ..A..........T............... GTGACTTACTCGGACGTGGCATACAGCGGATC 2458657 29 89.7 18 ..............G.C........G... TGTAACAGTAGCAGTACT Deletion [2458611] 2458610 28 82.8 0 ..........T..A.......-...CG.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.5 31 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGACATTGAAACGCTGCTGGCCGCCGGTGGTCTGGACGCGCCGCAGCAGCAGGGCGTGGTGGAAGCCGCTTTCCCTGAGGAGGAAGGGTTGGGAGATGCTGGTCATCGTACTTGAAAACGCTCCCCCCAGACTGCGCGGCCGGCTGGCCATCTGGCTGCTGGAAATCCGTGCCGGCGTTTATGTGGGCGCTTACAATCGCAAGATTCGCGACTACTTGTGGCAGCAAGTGGAAACCGGGCTGGAAGATGGCAATGCCGTCATGGCCTGGCAAACCGCTACTGAAGCCGGCTTCGATTTTGTCACCCTGGGCGTCAACCGCCGCATGCCGGTGGCTTTCGACGGCGCACAGCTGGTTTCTTTTCTACCTCTGCCAACCGATGACGCCGTCGAGGCATCGGCCTCATTTCCCGCACCGCGAGAACCCGGCTAGCAAGCGATAAAAGTTGGTGGCTTTTTGGGTGTCATTTTTCGTATTTAAAATCAATCTCTTGTAAATGGT # Right flank : TTCGCCGTAGTAAAGGAGGAAGCACCGCGCAGGCAGGACGCCACTTCCTGCGTGGGCACTCCTCTGAGGGCTTGCCATACGTACAGGCGAATTTCACGTATTCCTGCACGGTGCTTAATCATTATTGAGTGAAAACCGTTTTGGAATCAAAGCGGTTAGCAATGGGGCCTGGCAATCTCTGGAGCAACTGGTGTGTAGTGCGGCCAAAGCCTGTGGTCGGCGTTGCTGGCTTTGGTATCGGAATGAACCGGACTTGCCAGATGACCTCTCTGAGCAACTGATGTGTTCCCCACGGGGTGGGAGTGAACCGCCCCCGCGTGTCAGCAGGCCGGCTGCCGCCCAGTGTTCCCCACGGTTGTGGGGATGGAAGCCATGCCCACATCTAGCAAACCCAGCGCGGTTTGTCTTTGGCTACTGCTCGCTTTTTGGCAACAAATTCCTGCTCAAATTGCAAAATTCAAATATTGCTATTGACCAAGCCGGTGTTTTGCGAGTATTCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3700892-3701999 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARX01000001.1 Chromobacterium sp. Panama Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3700892 28 100.0 32 ............................ TGGGCGAAGGCAGCGTTGAGCTGCAATACACC 3700952 28 100.0 32 ............................ TTGTTTCAAGTAACGATAAGCCTCAGAAACGG 3701012 28 100.0 32 ............................ AAACTACCCACACACGAAGAAGCAGCCGAAGC 3701072 28 100.0 32 ............................ TTCGTCGTCCTTGAACTTCTTCATCGCCGTGC 3701132 28 100.0 32 ............................ AACAAAGGCGCGGTCAGTCAGCGCAATGACTT 3701192 28 100.0 32 ............................ AGGACCGAGCCGTACTCGGCGTCGAAGTGGAA 3701252 28 100.0 32 ............................ CCTCCATCCCGCGCGAACACCCGCGTGCCGCT 3701312 28 100.0 32 ............................ AGCAAGTAGGGCTGGAGCACCGGTTGATTGGC 3701372 28 100.0 32 ............................ GCGATCGTCGAGCAAATCGCCCAACAGTGGGA 3701432 28 100.0 32 ............................ AGGCAGGGTCAGCGGGATGTCGTATTCGCTCA 3701492 28 100.0 33 ............................ TGCGTGATCTTGATTTGGCCGATCAGTAATCTA 3701553 28 100.0 32 ............................ TGCGGGTGTGGAGCGCCTGGGGCGTTGGCACC 3701613 28 100.0 32 ............................ TTCACGGTCGTATCCGTAGATGTAGACCGTTT 3701673 28 100.0 32 ............................ AGGCGGCCATCGGCGTGAGCGGCTGAATATGC 3701733 28 100.0 32 ............................ TAATGTCAATACCGCTTATACCGTATATGAAT 3701793 28 100.0 32 ............................ ATGGGCGTTTGCCTCTCGGTTGGTTGCTGATG 3701853 28 100.0 32 ............................ TCTTGCTGCGCGATAAAGGTCTGCGGTTCCTG 3701913 28 100.0 31 ............................ CGGGAGAGAACTGATCCTGGCGAGTTACCGC 3701972 28 75.0 0 ..........A.C...C.C..AA.C... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.7 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCATTGGCGCTGAATAAGGGCGTGCCGCCCCCGCCGCAAAACCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAGGTGCCGGTGCCCAGCAGGATGCAACTAGTGTTGGCGATGGGGATATTCCAGTACAGCGAAGCCTTGCCCGCGTCGGTGACGTATTCCACCCGCCCGCCATTGACCAGCACCCGGCAGTGCTGCAGGTAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACACGGCGAATCCTTCGGGATGGAACGCGACAGCGCATCTTGCCATGGGCATGAGCGCAGGGACAGCCAGCGCGGTCTACCCTTTTTTTCTGCCCCCTGGGAGCAACATTTAAAAACAATGACTTAGCGATAAGCTTAAAATTTGGGTCAAAGCCGGAAGAATCGCTGAGAATGCCCACGCCATAAGGACTGTGGGCGGTGTAGACTCTA # Right flank : AACGCCCCTGATGGGGCATTTTTCTTGATCAGCCGCCTGAACAAAGCCACTCCCAAAGGATAAAATATGCCAATAAAATCACCAAAGGAGTGGCCGTGGAATACATTGACTACGTCAATCAGGCATCCAAGCTGATCTCGCCCCTCACCGCCATCTTCCTGGGCGCGCTGCCGGTATTGGCCATTCTGTTCGTGGTGCTGCGCACTCAGTCCTACCACATTCCCTTGACGCTGCTATGGCGCATTGTGGGCGGCAAGAAAGAGATCAACGACAAACTGCTGGCGGACTTTCTGGATGAAAGAAACGCCATCATGAAGTTCCGCACCCTGACCGGGCTTAAGATCCGCACCAAACAAGAAATGCTGACGCTGATCCAATGGGCGGCCAAGCACAACGAGGATATCGACGACGTCAAACGCTGCGGGCATTACTTCAAGCTCAGCGAGCCCGGCAATATCACCTCGCCCAATAGGTTAGGCAGCATCGCCCTACTGCTAGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3713025-3714373 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARX01000001.1 Chromobacterium sp. Panama Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3713025 28 96.4 32 ............A............... TTTTAACGGGCCGAGGGCAACACTCATGCAAA 3713085 28 96.4 32 ............A............... ACGCAGCACGACCGCCGACGACACCGTAAATC 3713145 28 96.4 32 ............A............... AGCAAGGCAATGGCGGTCAGACCCAGCAGCAC 3713205 28 100.0 32 ............................ AGTGGAAAATGACCGCCACGTCGGCAATGGCG 3713265 28 100.0 32 ............................ TGAGTGCCATGGAGATGGTATCGAGCAACCGT 3713325 28 100.0 32 ............................ TCCTGCAGAGGCGTCAGCTCGGCCGCCAGGTC 3713385 28 100.0 32 ............................ GCATTGAGTGGCATCGCCATTTGGAGAGACGT 3713445 28 100.0 32 ............................ AACCCAAGCCAGAATCGTAGTGAAGTCCACGT 3713505 28 100.0 33 ............................ ATGGAGGCCAGGGCGCGCAGCCTACTCCAGCGG 3713566 28 100.0 32 ............................ CAACAGATGCGCGGCTAAGGGCTTCATACCGC 3713626 28 100.0 32 ............................ TCGGTCTCCTCGCTGATGGTGATTTCGGCTTT 3713686 28 100.0 32 ............................ TATCATCAGAATCATGATCAACATCGGCACGA 3713746 28 100.0 32 ............................ TGGAAGTTTCCGCCACATAATCGTTACGGTAA 3713806 28 100.0 33 ............................ CTGGAGAAGGTGATAAGCCGGGAGATGAATGCA 3713867 28 100.0 32 ............................ TTTAACTTTGCTAAGAATAAAAGTTGCCCCCA 3713927 28 100.0 32 ............................ GTTGCGCGAGGAGCCATGAAGCGGATTTGCGC 3713987 28 100.0 32 ............................ GAGAGGGCTATGCGGTGTGCCGGCGGCGGCGC 3714047 28 100.0 32 ............................ ATTCCATGCCAAGTGTTGCGGCCGCGGCCGCA 3714107 28 100.0 32 ............................ TTGGTGCAATACTCCTAGCAACATCACACGTG 3714167 28 100.0 32 ............................ TCCTGCCATTCGCGCCACATCCCCGCCACCGC 3714227 28 92.9 32 ............A.G............. TGTGCCGTGAGTGCGAAAGAGCACGGCCGGGA 3714287 28 96.4 31 ............A............... CGGGCCGGGCCTGCTATGCCGGCTTCCCGAC 3714346 28 78.6 0 TC..........A.G......CC..... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.1 32 GTTCTCTGCCGGGTAGGCAGCTTAGAAA # Left flank : CACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAAGCCTGGCAGGTGCGGCGCAAGCAGGCCAAGACCAATCCGGACAAGGAGCGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGTTTCCCGGACAGCGCCGCCCGCCGCCTGACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGTTACCAGCTGCATATCGAGCAGCGCCCAGCCCCGGCCACCCACAGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTTCTGCCCCGCCGCCAAGCCTGTTAAATCAAGGGCTTGGCGCGGGGTGGGATAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGAAGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : AGCATCCCCAACCCCTCCCCCGCAATCCTTCCAATCACATTATTCTCAATTTGAATAACAATCTAATTTTCCAGATTTTTAACATATATGCAATCGTGCTAGATTTTGTTTTCCAAAATTAATAAAGGGCCGGCGCAGCCGGCGTTCCACGATGGCATATCCCCATTTCACTCTCTTCGCGCTGGCGCTGGCCTTGGCAGGGCAAGCCTTGCCGGCGCTGGCAGCCGACGGCAACACGCTGGACAGCGTCACCATCACCGGGTCGCGCATTGCGCGCGCCGGCAAGGAAGGCCCCACCGGGGTCACGGTGCTGAGCGGCGCCGATATCGAAAAACAGGGTTACACCAATGTCTACGACGCGCTGAACAATCTGGCGCAGAACACCGGCTTCACCCAGGGCGCGGATTTCGGCAATACCTTCACTCCGGCCGCCAACGCCATCAGCCTGCGTGGGCTGGGGCCCAACCATACGCTGACCTTGCTCAACGGCCGCCGCATCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //