Array 1 678898-681044 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007769.1 Campylobacter sp. RM16704 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 678898 36 97.2 28 ..................................T. TTACTACTTCTCGTCCTTGGGCTCAGAA 678962 36 100.0 31 .................................... TCAACAGGAATGGTTATATTTGACCCTTTCT 679029 36 100.0 30 .................................... TTGACACATTTGATAAGCACTTCTAATTAC 679095 36 100.0 30 .................................... AGAGCTAATGTATGATAAAGAGCATCCTAG 679161 36 100.0 30 .................................... AGATGTTGTGATTGAGGTAGAGGGAGAAAG 679227 36 100.0 30 .................................... TACAAAAGATGAAGCATATAAAAAAGTTAT 679293 36 100.0 30 .................................... CTAGAGTTACCATAAAGTCGAAACCTTCTG 679359 36 100.0 30 .................................... AGAATATCAACAACATTAATGGGGATAAGT 679425 36 100.0 30 .................................... TAGATCATCTACAAGAGATAAAACTACTCT 679491 36 100.0 30 .................................... TACTTGTTTAGAATAATCAATATTCAAACA 679557 36 100.0 30 .................................... AGACATTGACCACAAGGCACCAAAATGTCA 679623 36 100.0 30 .................................... CAACAGGAATTGTAACTTGAGGACCTTTTT 679689 36 100.0 30 .................................... AAATAGACAATACAAAAAAGATATTTTTGG 679755 36 100.0 30 .................................... GTACCGCGACCAGTAATGAATTCTTCAAAA 679821 36 100.0 30 .................................... TTCTAAGTATTTATTATTTACGCTTCCCAA 679887 36 100.0 30 .................................... TTCTATGACATAGGGTATAAGTTTGTTTTG 679953 36 100.0 30 .................................... GGGAAGAGCGGTATTAATACCACGCGGAAG 680019 36 100.0 30 .................................... AAATAACAAAGTATCATTAATAGACTTTAA 680085 36 100.0 30 .................................... ACTATCAACCAAAGACTTTTCCATAGCTTG 680151 36 100.0 31 .................................... CTAGTTTGTAATATAATTAGTGCATATTATG 680218 36 100.0 30 .................................... AGAGCTAATATATGATAAAGAGCATCCTCG 680284 36 100.0 30 .................................... TAATAAATTTAAGGTTTATGGTATTTTAAA 680350 36 100.0 30 .................................... AAATGATAGTGATAATATAGTCAAAGTATA 680416 36 100.0 30 .................................... TTCGTCGTAAATTTAGACGACGGGCTTTGT 680482 36 100.0 30 .................................... TACACCTGTTGAAGTTCCTTTTGATTGTAG 680548 36 100.0 30 .................................... ATAATTTTTGGAATGAGCGAGCTTTTGAGC 680614 36 100.0 30 .................................... AATTTCATCTACAAGAGATGAAACTATTTT 680680 36 100.0 30 .................................... TCACCAACGTGAGTTGTGGTGTCTAAACCA 680746 36 100.0 29 .................................... TAAAACTCTTTTATTAATTAATCCATTAA 680811 36 100.0 30 .................................... AAGACTTTCAAGCTTTGTTAGTATTATTAG 680877 36 100.0 30 .................................... ATCTTGATTAGATTTTATTAGTATTATTTT 680943 36 100.0 30 .................................... ACCACTAGTTTTAATATATCCGAATTCATC 681009 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.9 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : CTCAAGTATAAACATCTTTAAAAAGTGCTTTATGTATATCTTTAAATGCTGATAATCAAAATTGCATTTAATGGGATTTTTGCTTAATTCCAAGGCTTTTGCACTGGTTATATCTCTTTCTTTGTGAAATAACTCATCTAATGATTTTGCACCTATTTTATTAGTTTTGATTAAAAATTTATCAAACTCTGATAAATTTCCTTGAGAATCCCACATTAAGATATTTTCCATTCTTTTTTATATTCAGTGATGATTTCATTAGCTGTCGCTTCACCTTTTAAAATTTTGATATTATCAATAATGTTTCTTTCATTCAAAAACATATCTTCTATTGCAAAATTACCTATATTTGATCTTATAGCTTCATATTGCTCTTTAGTCAAATCATCTTTATATTTTTTAAGTATCGCAAGACTTTCTTCTAAGCTATGCACTTCGGGGTATTGTTTTTGCATTTTCACTCCTTTATAATTATAAGTATAATTATATCATAACAATAT # Right flank : TCCACTTTTATCAAACAAAGAAAAATAGATACTTTTTATGAAAAAAATATCTAAAATTATGATATAATTTTTACTAAAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTTGGTCATCCACGCAGGGTTGCAATCCCTTTAAAACCATTAAAATTCAAACAAACTAGGTTGTATAAACTTAGTTTTTTTCTTTTCTTTGCTTATTTTTTCATTGCCATACTTAAATTCTTTACTTTTTTCATCATATTCAAATAAAACTAGATTTTTATCATCATTCATTTTTTCATTAAAAGAAACCCCACCTAAAAGAATTTGCATATTATCAAACTGTTTTTCTGTTATGGTCAAAACTCTTATATTTCCATAAGGTGGTAAAATTTTTTCTATAGATTTTATCGTTGTTTTTGCCGAAGTTAATCCTTTGCAAATTTTTACATATACACTAAATTGCATCATAAAAAATCCAAGTTTTATTAATGAAGTTCTAAATTTACTCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //