Array 1 177705-179319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDII010000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SGEHI2016-PSU-BS-001SL opera_scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177705 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 177766 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 177827 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 177888 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 177949 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 178010 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 178071 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 178132 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 178193 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 178254 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 178315 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 178376 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 178437 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 178498 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 178559 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 178620 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 178681 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 178742 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 178803 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 178865 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 178926 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 178987 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179048 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179109 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179170 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179231 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179292 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195827-198357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDII010000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SGEHI2016-PSU-BS-001SL opera_scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195827 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 195888 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 195949 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 196010 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 196071 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 196132 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 196193 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 196254 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 196315 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 196376 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 196437 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 196498 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 196559 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 196620 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 196681 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 196742 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 196803 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 196864 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 196925 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 196986 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 197047 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 197108 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 197169 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 197230 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 197291 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 197352 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 197413 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 197474 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 197535 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 197596 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 197657 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 197718 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 197779 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 197840 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 197901 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 197962 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 198023 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 198084 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 198145 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 198206 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 198267 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 198328 29 93.1 0 A...........T................ | A [198354] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //