Array 1 236517-235308 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051880.1 Campylobacter fetus subsp. venerealis strain P4531 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 236516 29 100.0 37 ............................. AAAGCCAAAAAGGGCGGGGGAGCGTTGATTATCTAAG 236450 29 100.0 37 ............................. AGGGGACTATTTTAGGAGCGTAAAAATAGCTAAAAAG 236384 29 100.0 37 ............................. AAAAGAAAATATAGATGTAGATATCCATCTTATTTTG 236318 29 100.0 36 ............................. AAGACTCTTATAATTTACGGAGAAAACAGCGCAAGG 236253 29 100.0 37 ............................. ATGTTTTTTAAAATCTTTAAAAAAAGGGAGACAAAAA 236187 29 100.0 37 ............................. AAGAGCCGTTTATGCAATAGAAATAAATGCTATAAAA 236121 29 100.0 36 ............................. TAAGCCCTTGATAACACGCCCACGCCTAAAAGCAGA 236056 29 100.0 36 ............................. ATAATATTGTGGAAATGTAAAACCGTTTTGTTTTGA 235991 29 100.0 37 ............................. TCGGTAGTTTCAACACTTTTGTTAATATTTAATAAAG 235925 29 100.0 36 ............................. AATAATCCTAATTGGAGCTGAAGAAACTCCACTTAG 235860 29 100.0 36 ............................. ATAATTTCTAGCATTGGGCTATTATCCTCTTTTCAG 235795 29 100.0 36 ............................. ATAATATTGTGGAAATGTAAAACCGTTTTGTTTTGA 235730 29 100.0 36 ............................. TAGTATTGTTACTAAATGTCCTAAAACTTTAGATAG 235665 29 100.0 37 ............................. AATAGCTGCTTTAGAGTTTAAACACAAAACAACGCTG 235599 29 100.0 36 ............................. TGTCGATTGTTATTTTTATAAATGCTTGGAATATGG 235534 29 100.0 37 ............................. CAATCCTTTTGCCGTCATTTCTTTATCTGTTGTTTGG 235468 29 100.0 37 ............................. GACCTTTTTTAGCAGCCCAAAAACCTGCAACGGCAAG 235402 29 100.0 37 ............................. TAAAGCTCATTGCGATGGTAGGGCCCTGAGCGCTGAG 235336 29 96.6 0 ...A......................... | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.8 37 TTTCAACACAAACATTGTCATTAGCAAAC # Left flank : TAAGCACTCGCTCAATCCCAGTCTTATCTATATGTTTTACTACTTCATCTTTATTTAATGGGCTTGTGTTTGTCATAGTTACGCCATCTATCTCCTCGCTATCAATCCACACAGGCACAAGCTCAGTCCTACATCTAAAATGATAAGGTGGAAGCCCAAAGTTACTTGGAAGCATTTTACCTAAAAACGGCTCATTTCTCCAAATAGCAGCGCTTTTTTTCTCGCTTATATTTTTAGCGTTTTGGATATTGTTACTTTGGCGTTCTATATGGCTAGCAGGGATTATGCGTCCATTCATGCTTCTACAGATATCACTTGTGCGGCTATCTATCCTTGCTACTACTTTGTAGTGTGTAACGCCATATTTACTAGCTTGATTTACTCTTGCGATATTTTGCATTTGGCTTATGATATGATCGCTCACACCTTCAAAGTAGCTAGTATTTGCAGATAATACTCCTTTAAACTTCTCTTTTAAAGTATCTGCCATGTTTGCTCTG # Right flank : TATAATAAACTCATCATCTAAGCAAATTTAAAAAAGCAATTGAGATAAAAAATAAATTAAAAGATATTATCTAAAACTATTAAAAATAGATTATTTGTTGTAGATATAATATAGCCATAAATAATAAAAAAATAAATTTATTTTCCAATCTAAATTAAAAAAAATAACAATAATAAGTTAAATATCATAAGAACATTAAATTTAAACTATTTATCTATGTTTTTAAAAGTTTAACTAAAATTAGGTTGGAAAAAGCTTAATATAATATAAAATATAAATTTGTAGTTAGTGGTATATAAATATTATTATTGCTATAAATTAAAATTTAATTATTTGAATTTAGGTTGCAAATGGGAGAAATAGAAATATGAAAAATGTAAGGAAAATATGAGAAAATACGAAGTCGCCACAAAACCCTCTGGTGCCCAAAGTCGGACTCGAACCGACACACGGTTTCCCGTACCAGATTTTGAGTCTAGCGTGTCTACCAATTTCACCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 246892-249807 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051880.1 Campylobacter fetus subsp. venerealis strain P4531 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 246892 30 100.0 36 .............................. GAGTTAAAACCATTAATTTGCCATTTAAGCATAATA 246958 30 100.0 36 .............................. CTGATGATGTCTTTAGTGGTAAAAAATGAAATTTAG 247024 30 100.0 34 .............................. AGTTTTTTTAAAAAGCAACATAGTTTTTTATCAA 247088 30 100.0 36 .............................. ATTCTAAACAAAACATCATTATAAGATTTGAGATTA 247154 30 100.0 36 .............................. ATGAGTGCGAGATAAATGAAGATATTATAAAAGAAG 247220 30 100.0 36 .............................. TTGAGCTTTTTAATGCTTATAGTATATGGTAAATTT 247286 30 100.0 35 .............................. TAATGGTATACACAACAGTTTCTGGATTTAGTTCG 247351 30 100.0 36 .............................. AGAAAAGATTTACAAGATGATAAACTTTTAGCTTCA 247417 30 100.0 35 .............................. TATTAATATTTAACGTTTTATAGTCGTTGATTTGG 247482 30 100.0 35 .............................. CTTAACCCATTTGATGACACAAAAGGTTTAACAAA 247547 30 100.0 36 .............................. AAATAAAGCTTTGTGTTTTTGTTTAGGTAGCCTTTT 247613 30 100.0 34 .............................. CTTGTTAGGGTCTCAAAAAACCCGCTAGCTAGTG 247677 30 100.0 36 .............................. TTTCTATCTCTGATTTTTTTCCATCTTAGCTGGTCA 247743 30 100.0 36 .............................. CTGATAGTCTCTGGCATGCTTTGAAGCAAGAGATTT 247809 30 100.0 36 .............................. CCTTGAACTTCCAGCCATTACGGTATCCTAGAGATA 247875 30 100.0 36 .............................. TGTTGATGATACTGAAGAAATATATGAGAACGCTAA 247941 30 96.7 35 ....................A......... TAGGCGCTGTAGCTGGTCGCGATCAGCTATTTTTA 248006 30 100.0 37 .............................. CATTCTTTAATGCTTTTTGATTTTCTTTACCAAGATA 248073 30 100.0 34 .............................. TTGTTTTCTACCATACAAAGCTCTTTAGCCATAT 248137 30 100.0 35 .............................. TTTATTGTTTTGCTATTTACAAACAACGATGAATA 248202 30 100.0 36 .............................. CTTGTTTCGAACGTTTTTTTGCACTTAAAACAATAT 248268 30 100.0 35 .............................. AATCAATTAGAAAATGTTAGTGTTACTTATATTCC 248333 30 100.0 35 .............................. CAACCAAAAATCTATAAAAACTACTTTAATTTTAA 248398 30 100.0 36 .............................. TTTCTTGTGATTTTGCTAAATACTCCCTCTACTTCT 248464 30 100.0 36 .............................. TAAAGTATAGTTTCTGTAGTATCTAAATTTTGGATT 248530 30 100.0 36 .............................. ATACGTGCTATCTGCAAAATATATATAAGAACACTT 248596 30 100.0 36 .............................. AGGGCCTTTCCGTGCAAAAGATCTAAACAAGAATAA 248662 30 100.0 35 .............................. TAGGAGATGGAATATTGTTGTTGTAAAATCACGGT 248727 30 100.0 36 .............................. CGTAAAACCAAAAAGACTAAGGCAAAAACCTAAATT 248793 30 100.0 35 .............................. TATACTCAATAAAATAAGAGCTAGAATCTGTAAAA 248858 30 100.0 36 .............................. TCGACTGGAGCGAAAACACCAGAATAATAATCAAAG 248924 30 100.0 36 .............................. CCTCCAAAACACTTGCAAGGTACAAATGGTTCTTAT 248990 30 100.0 36 .............................. AAATGTGGAATGCCATCTATTTTTTCAAGCTCTTTT 249056 30 100.0 36 .............................. CTGAAAATGAGTTAATAAAACGTGGCTTAAGCTTTG 249122 30 100.0 36 .............................. TCTAAATACATAACAAGCAAGGCTTTAGAGCTATAT 249188 30 100.0 36 .............................. CTAAAGCGCGCTAACCTCTGCGCTCTCGAACCTAGA 249254 30 100.0 36 .............................. GTTTTTATAAAGTTTTTGGCTATTTGTGTAAGACTA 249320 30 100.0 35 .............................. TTTATTGTTTTGCTATTTACAAACAACGATGAATA 249385 30 100.0 35 .............................. ATATCTACTTCTGTTATAGCTTCTTTAAGTGGTTT 249450 30 100.0 36 .............................. GCACTAGCTCTAGTAGAAGTATTACCAGAGCCTGAA 249516 30 100.0 35 .............................. TCTTTAGCTACGTTTTTTAGTTCTTTAAAGCTAGG 249581 30 100.0 35 .............................. CTTGTTATTTTTCCTTTAGCATTAAACGCTTTATC 249646 30 100.0 36 .............................. ATGCTTAGATACTTTGGTAATTGGTGTAAGATGTTA 249712 30 100.0 36 .............................. ACTGCATCTGAAATCTCAATGATGAATTTCTTTATA 249778 30 93.3 0 .........................A...T | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.8 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : TCCTGCAAATTTTATTAAATTTAAATCCGAGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAATCCAACTCAATTTTAATGTTAATTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATATTATATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTTAATTTAGATTGGAAAATAAATTTATTTTTTTATTATTTATGGCTATATTATATCTACAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTCAATTGCTTTTTTAAATTTGCTTAGATGATGAGTTTATTATA # Right flank : TATGCTCGCTACTGCTAGTTTAAAATATATAATTATTAAATTTTGAATAGCAGTTTTGCAGTATCATTTTATGTTTTTGAGTATTTTTATAAATTTGAAAGAGCTGTTATAGGCAGTAATTCTAAAACAAACGGCTCAAGATGCTAATTAACTAAAATTATATTTTTTATATCTTTGGTCTGATATAAAATATTATATAAATTACTTGCAGTAACAATAAAGCAATTTTTAATTCCAAATAATAGAAATTTTTAGCTAAACGTAATGAAATTTAGCTATCATTATACGAAAGATTTTTACAAAGGTGAGTTGATGATACATAAGATTCTAATAGCCAACCGTGGCGAGATCGCTGTGCGTATAGTTAGGGCATGTAAAGATTTGCATATTAAAAATGTTGCGATTTATACAGAACCAGATCGTGAGTGCTTGCATGTAAAAGTGGCCGATGAAGCATATCAGATAGGCAAAGATCCTATAAAAGGTTATCTGGATTCTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //