Array 1 769534-769201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 769533 28 100.0 33 ............................ ATGGGGCTAGTGCGGTTTCGTGGGGTCGGTCCG 769472 28 100.0 33 ............................ GCTCGCGATTCCTTTCCGGATGTACCCCGGATC 769411 28 96.4 33 ......C..................... GTCCCTGGCGCGTTGTGCGCGGGATTTCGTGGC 769350 28 100.0 33 ............................ ACCGCAGTTGATGCACTCGTCGGCGGATTCGTC 769289 28 100.0 33 ............................ GCGTCCGCTGAGTCCGACGTCTGACACGCCGTG 769228 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GTCCGCTCCGCGCAGGCGGAGGTGAGCC # Left flank : GGCGCGATGAAGCGGGCCGTCAACAGCCTGACCGAATCGGCCGCCGTCACCTATGGACCCGAAGGCATCCGGGTCAACGCCGTCGCTCCGGGCACGACGCTCACCGAGATGATCAAGGGCTGGGAGGAGAACACCCCGGGCATCGTCGACCAGCTCAACGCCCAGACCCCCTTGGGCCGCGCCGCCCAGCCGGACGAGGTCGCCGAGGCGGCAGCCTGGCTACTCAGCAACCGCGCTTCCTATGTGACCGGTGCAGTGCTCCGCGTCGATGGCGGCGCGCGGGTGTAAGACGACGGTGTCGGTTCGGGGCGGCTTGTTCCCGTGCCGAGCCGACACGGCCGATCTCCGTGCGCGGGTGGGCAGGCTACGGTGAACACCGCACCACAACTCAAAATCAACGGCATCCGTGGCAAGGGGCTGCTGAGATGGCGCCGACCCAGACAGTGAAATCAGAAGGTCAAGAACAGATAACGGCCTTCTGAAGCCGCAGGTCGCGAAGG # Right flank : GAACGACAGGAATGCGTTCGCTCGGTCGGCCGAGCGGCGTCGGCTTCGCTACTCAGTCCGACGCCGCTGGTGGCCGGAGTGTCAACTCATGCGGTCGGTCTTCACCGCGTTGAGGAAGGCGCCGAAGGAGGCCGGGTTGACCATGAGAGTCCCACCGGCCCGGTTCTTGGTGTCGCGGATGCCGACCAGTTCGGACCCGCGCCCGATCTCGACACAGTTCGAGGTCGAGCCGCTGCGGGCGGCTTTACGCCATGTCATGGGGTGTGCGGTCATCATGCTCCTGCTCCGTCTCCAGGCCGCTCTTCGCAGCATAGCCAGGGCTCAATCAGCAAGCTCCGCCGATGATCGATCACCAAGGCTGTTGGATTTGATCGCATTGAGGAAGAAACCGAACGCAGCGCAGTCGACGATAAGAACCCCGCCAGCTCGGTTCTTCGTGTCCCTGATGCCCACCTGCTCAGCGGCATGTCTGATTTCCACACAGTTGCTGGTGTTCTGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 771930-771536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 771929 28 100.0 33 ............................ CGCCCACGCGCCCTTCTTCGTGGGGTCGACCTG 771868 28 100.0 33 ............................ GTTGCTTGCGCCCAAGTCCATGGGACCTAATCC 771807 28 100.0 33 ............................ CCGGGCAGGGGGCCGCCGGTGCCCCGGCACGGG 771746 28 100.0 33 ............................ CTCGCCGTCGACCATCACCCTGCGAGATCCACT 771685 28 100.0 33 ............................ GTCCTTCCAGGTCATATAGGTGACTCGGTGCGC 771624 28 100.0 33 ............................ GTTCCCCGCTTCGATCTGGTCGACCTTGGACGA 771563 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCCGCTCCGCGCAGGCGGAGGTGAGCC # Left flank : GGCTCTCCACCACCGACCACGTGGTGCCCGAAGGCCATCAGCTCGCGCTGATCATCGGCGGCAGCGACTCCCGCTACCTCCGAAACCCCGGCGGCACACCCGCCCTCACGGTCGGCCTGCGCGGGACCAGCGTCGACGTGCCGCTGGTGGACGGCCAGATCCACTTCGAACGGGCCCGCGAGGAACCGCCGACGGTGCGCGAACACCGCGTCCCCGATGAGCCGACGATCCTGATGAACGGCGACCAGGTTCGGCGTTAGTCAGGGATTGAGGTTGTGGGCACGCGGGCCGTCGCCGATTTCTCAGCGGCGGTTCGCGTGCTTTTCTCGTTGCTCGGTGCCCAGCCTGGCGAGGCGCAGGCTACGGTGATCACGTACAAGCTGAACTGAATACGCACCGACATCGATGGCAGGGAAAAGCTGAGATGGCGTCGACCCGAGCAACGGAATCACCAGGTCAAGAACAGATAACGGCCTTCTGAAACCGCAGGTCGCGAAAGG # Right flank : GCCGTCCTTGTCGTTGTTTCCACCGCAGTTCCGGTCCGCGAGACCGGAAGCACACCACCTCGATGTCAGCCCGGCACGTCCATCCGCTGGGTGCCGATGACCGACAGCAGGCGCAGCGCTTCGTCCGAGGATGAGCCGGGGGCTGCGGTGTAGAGCACGACCTGTTGGTCGGTGTCGGTGATGTCGAAGCCGTCGCAGTCCACGGTGATCGCGCCCACCAGCGGGTGGTGGAAGGTCTTCTTGAGCGCGGGTGCGGTGCAGACGTCGTGGGATTCCCAGAGTCGGGCGAACTCCGCGCTGCCCGCGAGGAGTTCGGCGACGAGTTCGTGGATCTGCGGGTCGTCGGGGTAGCGGGCCGAGGTGGCGCGCAGTCGTCGGGTAGCGGCCAGCGCGAATTCCTGGACGTCCGACAGGCCATACGCACCGGCGTCCGGACGGAGGAAGACCCAGCGGATCAGGTTGCGGTCGCGGGGCGCCAGGGCGGAGAAGTCCTCCATCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 911085-911539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 911085 28 100.0 33 ............................ CCCTGGAGGACTTCGCCGGGGCTACTACGGAGG 911146 28 100.0 33 ............................ GCAGACGTGCACGATCCACTACCGACGCTGTCC 911207 28 100.0 33 ............................ TGCGACGTGCGAAGCGATCTGCAAACCGAGGAC 911268 28 100.0 33 ............................ GCTGCGTCTCGCGGCCTGACCGACCACACACAC 911329 28 96.4 33 ............T............... CGAACACGGGCAACGCTTTATCAACGCCGAAGC 911390 28 100.0 33 ............................ GCGCACGTCGACAACTACACGGAAGCGCTTACC 911451 28 96.4 33 ......................A..... CCCACCGTTGTGGGATCAGAGCTGTGTCGGTGG 911512 28 96.4 0 ..........................A. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.6 33 ATCGGCCCCGCGCATGCGGGGATGGCTC # Left flank : TCGAACTGCAACCCAGGCTCGTCGTATACCTCCTCGATGGCGTTCTGCGTGACCACGGCGGTGTTGCAGATGGGTCTGAGCGTTGAGGAGGCCGTGCGGGCGGCCACCTGGGGCGGCGCCCGAGCGTTGCGTCGGGAGACCGGCGACGGCGCGGTGGGTGTGCTGCGACCGGGCGCACGGGCCGACGTCCATGTGCTGGATGCGCCCTCGGCGACGCATTTGGCTTACCGGCCGGGGGTTCCGCTGACGCATGCGGTGTGGCGGAAGGGTTCGCGGGTGCGGTGACGGGCTGCGGACCCACTATTCGAGCTTGGCGAATCGCTCCGGTGGCGAGGCGTCGAACTTAGGCGAAGCGGTCCAGCGCCGTTCTGCGCATCAAGGATTTACCGTGACGGTCTGGTGCTGAGCTGAAGGGCAGCGAAGTCACCTGTCGCTCCTGTGGCGTGGATCACGTGGTAATTTCATGGGGTGGCGGCAGGTAAACCTGCAGGTCAACAAGT # Right flank : CTGGAAAAGGTGGACCAGAAAAACGACGATGTCATCGCGAGCCCGTGCGGTGAGGCCAAGATTCGCGCCACGTCGGAGCGGAGTGAGCAGCCATTGAATCGGACGTCATAAGAATCGGCCTCGGTCCGAACGCCGCCAGCCCGACAGCAACCGCGCCATCGCCTGGAAGGGGATGGCCTGCCCCTTGGCTTGATCGACGGTACCGACCAGGTGTAGGTCGAGTTCCGGACAGTGGAAGAGCCAGGTCCCGGTCGCTCCCGAGTGCCCGACGAGTGTGAGAGGTCGGCGCGTCGGCGACACGAGGCGGCTGACCTGGAAGAACATGGTGCCCATTCCGTACCGGAGGATGGGGATGTTGCGGAGCCGGTTGCGTCGCTCGGTGAGCACCTCCGACGTGCGGGCGTCCTGGAAGAGCGCACCGCCGAGTAGCGCTCGCTGAAAGGTGAGTAGATCGGCGGTGGTGCTGAACAGGTCGTTGGAGGACTCGATCAGCGAGGTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCATGCGGGGATGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 1409949-1410505 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1409949 37 97.3 35 ..............T...................... ACCATCGACCTCTCCGATATGAACGGTGCCAGCCT 1410021 37 100.0 37 ..................................... CCTGTTGGCCGCCATCGACCAGGCGGCCCCGATCCGC 1410095 37 100.0 38 ..................................... GCGCTCCCCCGCCACGGATACCGCTCGGCCACCGGCGG 1410170 37 100.0 37 ..................................... GATTTTACTGCCGTTTGGCGGTCGTCGGATGGCGGTC 1410244 37 100.0 38 ..................................... ACGCACTGCTGCCCCACCGGCTGAGCGCACGACGGACA 1410319 37 97.3 37 ..............T...................... ATCGGGCACGCTCTGGCCGCCGACGGGGTGACGTCCT 1410393 37 81.1 37 ...T..........T.A.C.......GA.......C. GACGTCCGCGTAACCGTGGTGGAGTCTGCGGTTTTCG 1410467 37 83.8 0 .C.A.....C...A.A.........A........... | C,C [1410476,1410498] ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 94.9 37 GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : CGGCGAGCGCCCTCCGCCTGTACCGACGCGAAGCCGTTGTCACGCAGCACGCGTAGATGTTGGGAGACAGCAGACTGGGAGATGCCGAACTCGGTCCGGATGACCTCCGTGACCGCGCCGGAGGTCCGCTCGCCATCGGCCAGCAATTCCAGAATGCGCCTGCGCACGGGATCGCCGAGGACGTCGAACGCGTGCACGACGGTGACCGTAACGGCCGCTGCTTATATAAGTCAAGGCTGCTATTTGGTGTGCCGTGCACTGTGTTCGGCCGCTCCCGGCGTTCACGGCTCAGCCCGCGGTACCAGCGCTCGACCTCGGGTGGCAATGGTTTGATCGGCTAATCACGGCTCATCCGGTGCCAAGATCGTTTCCGTGGGCGCGCTTAGGGAGGGCAAGCGTCTGGCAACACGCCGCACCTTCCCGAACCGCATCCCGGGCGTGTTGGTCAACATCCGGTAACCTTGCACGGCGTTGAACACAGTCGTCCCTGCACACGCAGG # Right flank : CGCATCGGCGCTGCCGATCGAATCATGCAGGCTTAGATGGACGCGCAGTGAAAAGGACACCCGCCCCCTGCCTTGGGCGGGTGTCCTTTCCTCGACCAACACCGTCGGTGGTCGTCTCTGGTGGGTCAGGGCTGTTCCGTGCGGCGCTGGTGCGGCCGCTGGAGGACCGCCGTGGCCTCGTGTCCGCCTCTACTGGTAGGAGATGTCCGATTCCTCGTAGAGGCAGTGCTGCCCGTCGGGGCCCTCACCGGTCTCCTCCGGTTCGTCACCGTTGTCGTTGCCCTCGTAGCGCTGGCAGATGGTGATGTCCTGGCCGTCGTCACCGATGATGGTGATGTTGGACAGGGTTGCCGTGTCGCCGTAGTTCTCGTTGATTCCGACGAGCCGGTCCCCTGGGGTGCGGACAGTGATGTCTTCGAGCACGACGTGCCGTTCGTACATGCTGCTGCAGTTGCCGCACGACCGGTACAGCGCGCCGAAGTCCTCGACCTCGAAGTTCG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 1693990-1694260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1693990 29 96.6 32 ............................C GGGCGCGGGTGAGCCGTCCGACGCAGCGCGGG 1694051 29 100.0 32 ............................. CACCACGGGAGCCGAGTTGTCCCTGCAGAGCG 1694112 28 96.6 32 .....................-....... GCGCTTCATGTCGACCTTGCCGACGTTGGAGT 1694172 29 96.6 32 ............................G ACACTCCGGCTCCGGCCGCGAGCACGCATCAC 1694233 28 79.3 0 .....................-CACC.A. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTCTGCCCCGCGCACGCGGGGGTGTTCCT # Left flank : CGGTGCCCCGAGGCAGGTGCCACACAGCAGCACCTCGCTGACGCTCGCCAGGTCCACATCGGACTGCGACAGCGCCAGCCCGCATCGGTGCGCGCCGAACTATCGAACCACAGCCAGCCGAATGGTTCCTGTGTAGAGATCGGGATCGGGCTAGAGGCTGCGGACTGGCGGAAATCCAGCCGTAGTACCGGCACCAACGGCGGTTGCGTCGAGATCGGTCACGCCTCCGGACTCGTCGGCATCCGCGACACTAAGAACCGTGCGGGTGGCACGCTCTCCGTGAGCGGGACAGCGTTCGGCTCTCTAATCCTCGCCATCAAGGAAGGCAACCTTCGCTAGGCCTGCGTGAGTGCGTTGCCGGACCGTCGATGTCTAGTGGTTCGAGCGTGTTGCTCGTCCTCTTGGTCGAGAGTTCGATGGGCTTCAATTCTCAGGGCAGGGCTCAGAACCTAGTGGACGAAAAACCTGTTACCCGCCAGTAGAACACCAGGTCAGGAAGT # Right flank : TACACAACCACAAAGTCCGCCAAGCAAGATCATCGGGATCTGTGCCCCACGTCACTTCCATCTCTGTCAGGTTTCGCCGGGCCACCTGGTCAACACGGTGTATCCAGCAAGAACGGCAAGGGAGTGCATCGTGGAACATCGTTTCGATCTCTTGAAGAATCAGGGTTCCGCCAAGTCGTTGCGGCACCTGGTTGCGGCGGGGAAGGCGACCCTTGAGTCGACCGTGCCCCCTGAGACGCAGGAGTTGGTGCGCATTCGGGTCAGCCAGATCAACTCCTGCGCCTTCTGCACCGACATGCACATCAAAGAGGCGCTCCACGCAGGGGAGGACGCCCAGCGGCTCCACCTGGTCTCGGTGTGGCGGGACGCCAACGTGTTCACCGAGGCCGAGCGGGCGGCGCTGGAACTGGCCGAGCAGGGCACCCGCATCGCCGACGCGGCGGGCGGCATCACCGACGACGCCTGGGCGAACGCCGCCAAGCATTACGACGAGGAACAGT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCACGCGGGGGTGTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1747928-1748688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1747928 28 100.0 33 ............................ GGGAGGCTCGGAGTTGTCGTGTCGCCCACCGGG 1747989 28 100.0 33 ............................ GCCGGAGAATTTCCAGCCGGCCGTGATGGCGGA 1748050 28 100.0 33 ............................ CGGGTGGACGGTGAGGGTGGTGATCGTGGCGGC 1748111 28 100.0 33 ............................ CCCGCGCCGAGTGATTCCGTATATTGCTACGTC 1748172 28 100.0 33 ............................ GGCTCGGTGTGGGTGTACGGGACCTCCGGGAAC 1748233 28 100.0 33 ............................ GCGGCTGTCGAACGCGGAGTCGTCGCTGGCCTG 1748294 28 100.0 33 ............................ CTGGAATTGATTTTCGGGCGAAAGAAGGTCTGA 1748355 28 100.0 33 ............................ GCCGTTGCGGTACACGGTGATGCCCCGGATCGA 1748416 28 100.0 33 ............................ GGGGGTGGTCGGTCAGCTGTCGATCGAGGCGTC 1748477 28 100.0 33 ............................ GGCAGAGCGCGCCGGGAAGGCCACCGACGACCC 1748538 28 100.0 34 ............................ AGTGCTTTCGTTCTTGTGCTCCCTGTGGTGCATC 1748600 28 85.7 32 ...C......T.T.........C..... AGCCCGGCTGGGTGACCGCACTGCCACTTGCA G [1748617] 1748661 28 75.0 0 ...C....G.GA.A.........AT... | ========== ====== ====== ====== ============================ ================================== ================== 13 28 97.0 33 GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Left flank : AGAACACGATGCATCGACGCCGGGTGAAGGTCGCCGCCAGTTCGGGCCTGCACGCCCGACCCGCCGCGCTGCTGGCCAAGGCCGCCGCAGCGCAGGGCATCCCGACCACCATCGCGAAGGTCAGCGACGGTGTGCCGGGGGAACCGGTCGACACCGCAAGCATCATCGGCCTGATGACCCTGGGCGCCCACCAGGGCGACGAGGTCGAGATCGCGGCGGACGAGGAAGCCGCCGTGGATGCGCTGGCGGAGTTGGTATCCCGAGACCTCGATGAGGATGTGGTGCTCCGCTGAGGCGGTGCTATCGGCCGGCGTCGGGGGTTGGGCATTGGCGAACCCCTGCGCCGGTCGGGTCGTGGCGGCTTCGGTATAAAGAGATCGATACGGCTGAAGCTGGGGAAGCGAGCACTCGTGTCGGCCCTGAGCGATGTGGTGGCGTGGAGCGGCACTGTGGATGGTCACGAACTGGTCACGGCGCTCTGACGTCGCAGGTCGCGAAGG # Right flank : CAGCTCAACGGAAGTCATATCCGCTCGACGGTTGTTATCGACACGATCGGCCGAACCCGCTCAACGCGAGTCATCAGCGAACCGGGCATTGACCGGCCCTGGCACCGCGTGCCCTCCTCGGGCGGGGCGAGGGCCGTCCTGGGGCAGCGGCAGGTCGGGACACGCCGAATGCGCTACGAGTAGCGCTTGCCGATGCAGGCCTTCACCACGTTCGTCTTCTCGCCCATAAGAGGCAACCGGTTGGCCGACAGAGTCGGGACGACTGCGAAATTCACGACGAGGCTGCTCACGGTTGAGGGTTAACGTCATCGGCTGCCCACTCGTGCACCATCTGCGAGCCTCGTCGAGAACTTCGTCCACTGTGTTGGACGGAAACTCGCTGGTGATCGGAAAATGCGGCGAGGAATGCCCGCACCTGCAAGTAATCGTCGACGCAGTTATATCTGATCAGCCGCGTAGCCGACCAGCACCAACGATGGCCCGAGCAGCACTTCCGTGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 2393580-2394348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2393580 37 100.0 37 ..................................... GACCAGGCAGCGGTTAACAAGCTCATCTCGGACCGGC 2393654 37 100.0 38 ..................................... TCGTAATGCTGGTCTCGCCCCTGCCTGTGACGGAAGGG 2393729 37 100.0 36 ..................................... CTCGGAGGCTTGCAGAGCCTCATAGGCGAGACCAAG 2393802 37 100.0 35 ..................................... GCCAACACCATCTGGCGCACGAGCACAAGAACCCA 2393874 37 100.0 36 ..................................... CACCCCAACCCCGGGGCCGCGCCCGAGGGCACGACG 2393947 37 100.0 36 ..................................... CACGGAAGCCGTAGGTGCGCGGTGCGCACCAGGCCC 2394020 37 100.0 35 ..................................... CGGAGCCCGAACCGGAGTCGCTGGAAGTCCTTCCT 2394092 37 100.0 38 ..................................... TCCACCGCGACGAACTTCGACCTCCACAAGCCGCGTAG 2394167 37 97.3 35 ................C.................... AATCCAGACCACGCGGTAGGGCATCCCATGCTTGG 2394239 37 94.6 36 ......T.........C.................... ACGAGTGTCGTCTGGCGAATCGTGGTCGGGCACCCC 2394312 37 97.3 0 ......T.............................. | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.0 36 GTGGCACCGGCCCTTTTGGGCCGGTGAGGATCGCAAC # Left flank : GGAGAAGACCACCTCGAGTGCCTCGGGCAGCCCGCTCCACAGGTCGACCACCATCTCGCCGTCGACATGCACGCAACACTGCGCGGTCTCGGTACCGTCATCGGACAGCGAACGCTCGAAGGCCTCGGCCACGCGTTGGTAGCCGGCAACGACTGTTCCATCGGCAGAAGGCGACATCGCGCCATTTTGGCAGGTAGGCGCCCTCATTCCGGTGCGACGCGGCGAGTGGGAGTGTCGCGGTGACGGCGTTTTCAGCGAACGTGTTCGGACCGAATCGAGCGCTGGGCGCGTTCGTGAAAATGGTTCGTGCGTGGCGCTTCGGCGGGGGTTGTTCGGCGGTGTGTTTCGCCGCCGGGCCCGGTATCGCGGTGCTCCAGGTTGCTTAGGGAAGGCAAGCGTCGTGCGACACGCCGGGGCTCACCCAAGTTGACGCCGGGTGTGTCTGACACGGCTCGATAACTTCGAGGCCCCGCGTAATACGATGTGCCTGTTGAACCAGG # Right flank : CGGCGACCGCTCGCGGCTGGGACCCCGGCGGTGGTGCACGATGGCGATCTGCGGCGCCGGTTATCGGCGCCGCCAGGCCGCGAGCAGTCCGCCCTGACAGCGGAGTGAGCGGCATGTCTTTGATGCCATGCGATTGCTGAGATATTCCGCCCTCGCGGCGCGTTCCCACGATGCGGCCTTCGTTGACCGGTTCGCCGCGCCGCGCTTAGCGTCGATCGCGAGGTTCGAGGGCCCGCATCGTCGATCGCGGCGGGCCGCCGATCGAGAAGATCTAGGTGCGTGCCGATGGTTGACGTCTCGTTGGATCTGCTTCAGCTTCGCACCTTCGTCGCCATCGAGGACTGCGGAGGTTTCGGCCGCGCGGCCTCGGTGCTGCGCATCAGCCAACCCACGGTGAGCCAGCATGTCCGGCAACTGGAACGACGATTACGCCAGACCCTGGTGGAGAAGGACGGCAGGCGAGCCCGGTTCACCGCAGCGGGCGAGCGGCTCCTCGTCGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTTTTGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.00,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 8 2445626-2445415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2445625 28 100.0 33 ............................ CTGACACCCCCGGTTACCGCCGGGGGTGTCGTT 2445564 28 100.0 33 ............................ GATCGCCGCGTCCCGGATCGCCTCCAACCTCGC 2445503 28 100.0 33 ............................ GCCATCCGCCAGCCAGTGCCGAGTGATATCCAG 2445442 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCACCGCGCTGTGGCTGCTGCAGATCCCGATCGCGGTGCTGCTGATCCTCCGGCTGGTCTCCCCCGCGCGACGCGGCGACAAGCTCGGCCGAGGCACCCCGGTCTCACACGTCATCCGTCGAGTCGTGGCCGTGCTCGCGGTGGTGGCCGCGATCGGCGCGATCCTCGCCGTGGTGATCACCGGCCGCGACGGCGGTCGGACCCGGGACGTGACGGGTGCAGCGCCGTCGGTGCTGCCCTGGATGGTGTGGACCGGATTCGCGGTCTTCGTGCTGGGAGTGGGTGTGGCGGTGCTTCTGGTGCGCCGCGCGGAACGCGCCCGGGTCGCGGCACGGAAATCGCCTTCGGAACCGGCATCAGAGCCGGCCGATGCGGAGTAGGCGGCCCGCTCGGATGGCTTGCTCGCGGGGCCGTCATAATCGGCCTGTGGTTGGGTCCTTTCCGCACGCTCCGGCGATCACGAACACATAACGCGCTTCTAAGATCGCAGGTCGGAAAGG # Right flank : GCCAGCGTCACCGACCCTGGCGGAGGTCACTCAACCAGCCGCCTCACCGATCCGTGGCAGGCAACGGCTCCGGTTCGGCTTTCGGCTGCACGCGCCGCATCGGTAGGCCTTCCTCGGTGGTGAGTCCCTTCTCGATGAAGACCACGTTGCGGTGGAAGTACACCCCGGCCACGGTGCGGTCCGCGTAGCTCGGCTCGAAGCCCGGTGCCTGCTCGTACTCCGCATGGTGCAGGCCGTCGAGGAGTGTCTTGAGGAAGCCGACGGTGGTGTTCTCGTCGTTGAACTCGGTGTTGCTGCCGCCGAAGTCCGGCCAGTAGGAGGTCTGCAGATCCTCGATGACGTAGAAGCCACCCGCCCGTACGTGCGGGAACAGTAGGTGGAAGCTGGCGATCACGTCTTCGCTGCGGTGGCTGCCGTCGTCGACCACGATGTCGAAGGGGCCTACTTCCGCGCCCAGGACCGCCGCCAGCTCCGGATCGGTCTGATCGCCCTGCACGGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 2497930-2497658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2497929 28 100.0 33 ............................ CCCGCACACGAAGCAGGCTCCCCGGATTCCCCA 2497868 28 100.0 33 ............................ CTACTGGTCGTGGCGGAAAGTCGAGTGGGTCCC 2497807 28 100.0 33 ............................ TTACACCAGCGCGGGCGGGAACTCCGGGGCGTT 2497746 28 96.4 33 ........................A... TCCTGGTCTCTTCCTGGTCATGGGTGATGATGA 2497685 28 75.0 0 .........A...........CG.CCGA | ========== ====== ====== ====== ============================ ================================= ================== 5 28 94.3 33 GTAAGCCCCGCGCAGGCGGGGGTGGGCC # Left flank : GTGGCCAGCAGCGCCGAGGCCCGATCGCCTAGACCCACCAGGCCGGGTCCCAACGCATACCGCCGGGACGGAAGTTGCCGCACGTAGCCCATGGTCGACAGCGTGCGCATCAGCCGATGTGTGGTGGGCAGGGCCAGATCGAGGCCCTCCGCGAGTTCGCTCACCCCGGCCTCCCCACCGTGCGCGGCAAGCCATTCCAGGATCGCGAACGCGCGGACCACCGATTGCACGGGACCGGGCCCGGTCTCCTCGGCCATCGATGGGCCTCCCTCGGGTGAAACGGAAAAGATCGACCACACTATCCCAGGTCATCGGTGTCGTGCCTGGAAGTTCCGACTCGGTGCCTGTGGTGTGGTGCGGTGGCTTCGAGTTCGTCGGCGACGATCGACGAGCCGTCGCTAAGATCGTCATCATCGAACGCTTCGGAGACGTCGTGCAGCACATCGACAACGTAGATCACGAACGCATCACGACCCGCTGACGGTGCAGGTCAAAAAGGG # Right flank : GCACCCGAGGCAATATCTCGATCAGCCTGGTCACCCACGCCCGAACAGGCCGCGACGGACCTACCCGACCCCACTCAGTCCAGGCTGTCGTACGCCGCGACCGTCAGGAAATCCACGAACGGGTCGGTCAGGGCGACATGGCGGAACAGCGCCTCGGCGTCCGTCCACCGCCCGGCGGCGAAGGCCTCCTCGCCGATCTCCCCTCGCACCCGGTCGAGTTGTTCGGTGATGACGGTGTCGATGAGTTCCGGTGTGATGGCGGTGTCGTCCTCGAGGCGGGCCCCGGTGTGCACCCACTGCCAGATCAGGGATCGGGAGATCTCGGCGGTGGCCGCGTCCTCCATCAAACCGAAGATCGCGACGGCCCCGGAGCCACGCAGCCAGGATTCGAGGTAGCGCAGTCCGACGGCGACGTCGTTGTGCAGGCCTGCCGTGGTGACCCGGCCGGGAACGCTGGCCACGTCCAGGAGTTGCCCGGCGTCGACGTCGACGTGTTCGCA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAGGCGGGGGTGGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 10 5006359-5006209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5006358 28 100.0 33 ............................ CCCGGCGGCGGTGATCCTGCGGTGCAACGCGAA 5006297 28 100.0 33 ............................ TGCTTCCGCTCGGTCGGGCTCGACCATCACGCC 5006236 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 ATCCGCCCCGCGCACGCGGGGGTGTTTC # Left flank : CGCCCAGGCCGAGATCCTGGAGGTTGTGCGGGAAAGACCCGTCCGCGGCACCGTCGAACGCAGCTACCGCGTTCGGCAGGAGAAGGCGCGCATAGAGGGCGACGTCCGCGAGACCATGACCAAGGACGACCACCGCAAGGCCTTCGCCGTCTTCAGCGGCGCCCTGATCGGCGACTTCGACCGCTACCTGAGCCGCGAGGACACCGAACCCGCGCAGGAGAACCTGCTCTACCGGCAGGGCGTCGTCTGGGTCACCGACGAGGAATACACCGAACTCGTCGAAGAACTCGAAGCAGCCGTCGAACGCCGTAACGAGCCCGGCGAGGGGCGCACCCGGCACGTCATCAGTCTGGTTGCGGTGCCCGATAAGCCGGTGTGATGACTTGGCGGGGCGGCTGAGGGTGGCTGTGCTGCTCTGGTCGGGGCTCCTGATCGATAGACTCGAAATCCAAGTGGTCGAAAACTCGGTTACTGATCGGTAGAACCCCAGGTCAACAAGT # Right flank : GCAGCAAGCCGCCGATCGTCGCCTCCAGGAAGCGCCCCGCCCATGCGAGGCGCCTCCTCTCACCACCGACTCCGCAGCCACATCGCCAGCAGCTCGACCAGCATCACCGTGGCGAAGATCAGGATCAGCACCGTGGTGACGACGCCGAAGTCCAGGACTCGGGCGGCGTTGAGCAGGTAGAAGCCGATGCCGCCCGCGCCGACGATGCCGAGCAGGGTCGCGGAGCGGATGTTGGTGTCCAGCAGGTAAAGCGCGTGTCCGACGAGCGCCTTGCCCGCTGCGGGCACGGTGGCGGCGAGGAACACCTGGAGTCGGCCTGCCCCGGTCGCCCGTAGTGCGCGTTCCGGGCCGGGGTCGACCTCTTCCAAGGAGTCGGCGACGAGTTTGCCGAGTAGGCCGATCCCGCCGATGCCCAAGGCGACCGCGCCCGCCACCTCGCCGAGTCCGGTGATGACGACGAAGACGATCGCCAGGATCAACTCGGGAATCCCGCGAATGAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCGCACGCGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 11 5010358-5010207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5010357 29 100.0 32 ............................. TGTGTGCTTCACGCTGCCACCTCTACGATAAT 5010296 29 96.6 32 ............................T GCCCCTTGACGGTCAGGTACCACGCCGACGGG 5010235 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 ATCCGCCCCGCGCACGCGGGGGTGTTCCC # Left flank : TTCGTCGAGATCATCGCAGGCCAGATCGGTCGGATCACCGTCGATGGAGCCATCACCGAGTTTCCACTGCCCGACCGCGACGCCCGGCCCCATGCCATCACCGCCGGGCCCGATGGGGCCTGCTGGTTCACCGAATGGGGCGCGGGACGGGCCGGTCGAATCGATCATGAGGGCGCTATCCGAAGCTATGACCTTCCCGCCGACAAGCCGGAACCACACGGCATCGCGCTCGGCGCCGACGGTGGGCTCTGGATCGCACTGGAGGCTGGCGCGATCGCGCGCGTGACGCCGTCGGGAGAACGTACGTCTGGTCGCTGAGGTTTTGTTCGGGTGGTGAATGTGATGGGGCTGGCGGGCTTTCGAGGGCCGTTGGTCGCGGGGCGGGCGGTCTGTCGGGTGCGACGGTGGCGGTGTGGTCGCGGCGTCGATCGATCTCTAGACTCGAATTCTTAGTGGTCGAAAACCCGGTTACCGGTCGGTAGAACCCCAGGTCAACAAGT # Right flank : CTGCTCGAGCTAGCCGAGAGCTGCGGCGGTGCATTCGCCCGCGATGACGACATCCGAAGCGACGAACTGTCCACCGGATCCGAACCGCATGGCATCGCGCCCGGCCCCGGCGGCGCGCGGTGGGTGTCCCTCGAATCGATCGATCGCGCGCGTGATGCCGGATTGCCCACCGCAGACCGAGCATCCTGGTGCGCGCGAGACCCAGACGGCCGCGCTTCAGGCCGGGGTTTTCTCGGGGGCCGTGCGCAGCATCTGACGCGCCAGCCCCACCCACCAGACGAAGGTGAAGGCGATGACGGTCGGGTTCTTCACGAACAGCAGCACCGCGAGGTAGGTCGACCTGGTTTCCTCGGCCAGTAAGCCCGCCACGACGTTCTCCGCGAGCAGGTCGAAGACCAGGAATGCCACCGAAAGCAGTGCGCCCTGGATCAGCAGGCTCGGCCAATGCAGCCGGGCGAACTCGGACAGGTTGTCCCAGTGCCACGCGGTGTTGCGCATGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 5041476-5041262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5041475 29 100.0 32 ............................. GCAGCCGCCGAGGGGATCACCGCGATCCGTCA 5041414 29 96.6 32 ............................C GATGCCGAGAAGGCCAATGATCAAGAGTGGTG 5041353 29 100.0 33 ............................. ACATGGTCACGGACGACACCCGAGGCCGAGCAG 5041291 29 86.2 0 .C..................T.C.....C | T [5041275] ========== ====== ====== ====== ============================= ================================= ================== 4 29 95.7 33 ATCCGCCCCGCGCACGCGGGGGTGTTCCG # Left flank : TCTCGGATGACCGACGGGGCCAGCGAACCCCGGTCGTAACCGACGAGCCGTACTACGCCAGCACCGAAGAGCTGGTCGCCGAAGCGGACCTGATCGTGCGGGGCCGGATCGATGCGACCCACCGGCAGACCATGGACGACCTCCCCGAGATCCGGGCGGAGGTCACCGTGCTGGCTAGCGTCGGGGACACGGTCGCCGTGGGCGACACCATCGACGTGGCCTACGTGATCCGGGGCGCCGCACCGTCTACCGCCGATGTCGCCGAGGGCGGCGAATACGTGCTGCTGCTCAAGGACTGGGGCGACGGCCGCCGCACCCTGGTCAACAGCACCCAGGGTTCCTATACCGTGGCGGAGGGCCGGGCCATCGCGGGCCAACACAACGAGGTGGGCCTCGGCGGCGAGTTACTTGCGGAGCTAGGGCTTGGTGAGTAGGCGATCCTCGAATTCCAAGTGGTCATAAATCCGGTTACCGGCCGGTAGAACCCCAGGTCAACAAGT # Right flank : TCCCGGAATGGCCAGCACGCACGAAGAATCCGTGACCCGACGCCACCACACCGCAAACGCCATCGTCTCCACCCATGAACAGGCTGACCGGCGGGCGCGGTTGCTACTGCCGCACCGCCCATGCGGATTTTGCCGTCAAACCAAGGCACAGGGCGCGGGCGGAGAACCCGCCCGCGCCCTGCCTTACTACCTGATCAGCCGCCTGCCTGTTGCCTCGACTGCGCCGCCACCTCGCTGAAGTAGGTGAGCAGCACCTCGAAGTTCTCATCCGAGTCGGTGCGGATCTCGGCCTTGGTGCCGTCGGCGAAGTCAAGCTTGATCTTCCCGCCGCCGGTGAGGAACTTCTTGTGTTCGCCGTCCACGATGTTCTGGTTCAGCACCCACCGGCCATCGTCCCTGGCGAACAGGCCCGCCGCGCCGTTCTCCAGCAGGGTATTGATCCGACCGTTCAGCGCCTGGCCACCCTGTCCCATCATTCCGGAGAGGTTCTGACCAGCGAG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCGCACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 5122115-5121419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5122114 37 100.0 35 ..................................... ACCGACGAGGTCTTGGCTACGCCGTTGGCGGCACG 5122042 37 100.0 37 ..................................... TGTTCGCGCGTCCGCACCTGCACCCGCACCCGCGCCA 5121968 37 100.0 37 ..................................... TTCCTCGACCGAGGTCACGCCCGGTTGGGTCATGAGC 5121894 37 100.0 37 ..................................... TGTTCGCGCGTCCGCACCTGCACCCGCACCCGCGCCA 5121820 37 100.0 37 ..................................... TTCCTCGACCGAGGTCACGCCCGGTTGGGTCATGAGC 5121746 37 100.0 37 ..................................... TCCCTCTCGTTGGTGATCGGCGGGTCGGGTGGTGGGT 5121672 37 100.0 35 ..................................... CGCTACCGGGGTGTCGTGCGGCGCCTCTAGGGCGT 5121600 37 100.0 35 ..................................... GACCCTGTCTGGTCGATCACCTCGGCGGACGGAAG 5121528 37 97.3 36 .......T............................. CTCGTCGCGACCGCGTTCGCCGGAGTCGCGATGCTC 5121455 37 94.6 0 .......................TC............ | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 99.2 36 GTGGCAGCGGGCCTCCGGGCCCGCTGAGGATCGCAAC # Left flank : CTCGCGATAGTGGACCGCTTCGCCGCGCGGAAAGCGCTGCCGGGTGGTGCGACTGTTGCCGCCGCTGAACACGACGAGCGGGAACCACCCGGCCGCATACAGCTCCACGGTGACCGTGGCGACGCCCAAATCGTGGCTGCCCAACGCGATGGCCGCATCGCAGGTTCGAAGTTCATGGCCTAGTTGGTGGTAATCCCAGATCAGCTCCGCCGCACGCCACTGCTGGGCGGTAATCTCCTCGATGGCACCTGCGGGCTCGCGATCACGCGACGACATTGAGCTCCTCTATGGAGATACCTGATCGGCCATGCGACGGTCTGCACGCTTGGCGGTACCGTTCGGCCGCATCATCGTTGGCACCCGGCTGGGCCATGGCCTTCAGCTTAGGAGGGCAAGCGTCGTAAGACACGCCGTCTCAGTCCGAAGTGTATTCCGGGCGTGTTGATCACCGACTGATAACCTCACGGCGAGCAAGAACGCAATACCCCTGGAAAAACAGG # Right flank : CGAAGGATTACGGTGTTGTGCCTTGCCAGTCGTCGGTGTGGGAACGCACTGCCAAGCCAGCGATGATCTCGTCCGTGATCGCGTTCCCGCGCCTTGCGAGGTCCGGACGCCGCTCGTGAAGCGGAATCGGCTTACCGGGATCCTCGCCGCGTGCCCATGCTGCCCAACGTCGACAGCAGTAAGCCATGCTGTCGGTCCAGTTTTCCAGGAAGTGTTGGCGTGCCGGGTCCGCAACTAGCTCGTCGGTTCGCTGTTGAAGATCCCACTCGAAGTAGTCGGCCCATTCGGTTAGCGCGTCGGCAATCTGTTCATTCGGCAAGGTTGTGGAAGCGTTGGCGCAATGCCAGTCCAAGAAGGGATTGGTGATCTTTGCGATTCGAGGCTTGGCGAGAAGGTAGCGCCTGATGGTGGGCCACCGGCCGGATGCTTGCTCCATGCTTACGGTCGGCTTCATTGGCGCTGGTTGTGAAGTGCGAAGGGACAAGGCTCGACTATTCACC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCGGGCCTCCGGGCCCGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 14 5957424-5958255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIS010000001.1 Actinoalloteichus hymeniacidonis strain DSM 45092 Ga0436917_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5957424 37 100.0 37 ..................................... TGCGGGAGACCGAGGCGACGCTGACCCTCGGTGCGGC 5957498 37 100.0 36 ..................................... AGTTAGTTTCGGGTGAGTCGATTCCAGGCAATGCCG 5957571 37 100.0 38 ..................................... CAGATCGTGTGCCGAGTGACCTCGGTCGTTCGCTCGAC 5957646 37 100.0 37 ..................................... TGCGGGAGACCGAGGCGACGCTGACCCTCGGTGCGGC 5957720 37 100.0 36 ..................................... AGTTAGTTTCGGGTGAGTCGATTCCAGGCAATGCCG 5957793 37 100.0 38 ..................................... CAGATCGTGTGCCGAGTGACCTCGGTCGTTCGCTCGAC 5957868 37 100.0 37 ..................................... GCCAACAAGATCAGCTCCGGTGCCGCCGCCGACGTCG 5957942 37 100.0 18 ..................................... CCCGGCATCGTCGTCCTC Deletion [5957997] 5957997 36 75.7 37 ACT..T.....AA.-.....TG............... GGTGTTCGCGCCTGCGTCATCTCGCTGCGGCTCTCTG G,T [5958001,5958014] 5958072 35 91.9 37 .............-.C...........-......... TGATCCTTGTCGATCTTTACGGCGTAAAGTTCAGGTC C [5958089] 5958145 35 89.2 38 ........-....-.C.A................... CGCCGTCTCGGGTGTCGTGGTTCCGGGTGTCGTTCCGG C [5958162] 5958219 36 81.1 0 ...A.........-.C.T........T.......GC. | C [5958236] ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 94.8 35 GTGGCACCGGCCCGTGAGGGCCGGTGAGGATCGCAAC # Left flank : CGATCATTCCTGGGTGGCCGACCACACCAGCACGGCGATGGACGGCCTGACCACCTGGCTACGACCGCTACGGACCGCAAGACTCGTGGTGATCGAACTCGGTGCGGGGACCGCCGTACCCACGGTGCGGCGACAGGCCGAACTGGCCAGCGCGGCACGCGGCGCGCTGATCAGAATCAATCTGCGGGAGCCCGCTATCCGGCACGGGCGCGGCATCGAGATTCCGATGGGAGCCGCTGCGGCCATCGCCGCGATCGACGAACTGTTGCCGGATCGGCTGCGGGCGGCGGTGGAGACGGCCGGCTGATCAGCTGCGCGGGCCGGTCTCGACTGTTCGGTGTTCTCCGATGTGGTCCTCGCGCCGCGATGCGGTTCGCGCCGCTTAGGGAAGGCAAGCGTCCAACAACACGCCTCACCCTCCCGAACTGAATTCCGGGCGTGTCGGTCAACATTCGGTAACCTTGCCCCGCAACGAACACAATCGCCCCTGCATACGCAGG # Right flank : CACTACGACGGGACGACGAACTCGGCCAGGACTGCCCGGTGGTCGCTGCCGGGCACGTCGAGGACGTCGAAGGACTCGACGGCACAGCGGTTGTCGACCAACACGTGGTCGATGGTCAGCGGCGGCGCGGTGATGGTGCCGCCCGCAGGCCAGGTAGGGCGGAGTCCGTCGCCCGTCTGGTCGGCCGCGTCCTGGTAGCCGGAGTTCAGCAATCGCCGAAGTGGGCCATGGTCGAGGGTGGCGTTGAAGTCGCCTGCCAGCACCCGGATCGGGTCGGCCGAACGGGCCTCGGGCAGGCTCGCGAGTTCCCGCTGCCAGGTGTCGGTGGTGCCGTCGCCGATCGGCCACAGCGGGTGGACCGACACGATCTCGAACTCGCCGCCGTCGGGCAGCGTCACCGCTGCGGCGGACTGGCGATGTGTCGCCGGGATGGCATCGATGCGTTCGGCCTCGTGACGCGAATAGAGGCCCGAACCGGGTGCGCCGTTCTCCGGGTCGAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCGTGAGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //