Array 1 59721-57027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRR010000007.1 Cyanobacterium aponinum FACHB-4101 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 59720 37 100.0 39 ..................................... TCAGATAATTGCATATTAAATTAAATCACCACAGAAGAG 59644 37 100.0 38 ..................................... GCCGTTTTAGGTTCGACAATGCCGGATGAAGATGATCT 59569 37 100.0 42 ..................................... TGTAGTGCAGGTGCGGATGGAGGAGTGACATAGGCTACCCAC 59490 37 100.0 41 ..................................... TGCAAGTAGGCAATGACAAGGTTTTAATTGGTAGTAACTTT 59412 37 100.0 35 ..................................... CCCCGAAGGTCTAACAAACAAAACGGGGATGCAAT 59340 37 100.0 43 ..................................... CTTTGAGCTATGGATGCCCGAAGTAGCTGAATTTTATAAAAAA 59260 37 100.0 40 ..................................... CGGAGTGTCCACTACAAGACACGATTAAGTTCTGAATTTT 59183 37 100.0 36 ..................................... GTCTGCTCTCTTAAATCAAGTAATCCGACATACCAT 59110 37 100.0 42 ..................................... AGAATTTAATGGCAGGGTGACATGGGATTATCTTTTGAGGAA 59031 37 100.0 43 ..................................... TTTGTAATTGTTGGGGGTATAGCATCCTTCAAGCCAATCGGCT 58951 37 100.0 47 ..................................... TTTGTTGATGTATTGCTCCAGTTCGGCAATACCAAAAATTGATTTGA 58867 37 100.0 43 ..................................... TTTGTAATTGTTGGGGGTATAGCATCCTTCAAGCCAATCGGCT 58787 37 100.0 45 ..................................... GCCACTGCGATGCTAGCAAAGCCATATCCACCATCAATCATTGCG 58705 37 100.0 37 ..................................... TTAGAGAGAGACATAGTCTCTACATCTAACCCATAGG 58631 37 100.0 38 ..................................... TTTTATTAGCTTGTTTTGATCATCAGTACGGAGGCCTA 58556 37 100.0 42 ..................................... TAAAAAGGTGTATAGTCGATGTCCAAAGAAATATCTTTTGAA 58477 37 100.0 42 ..................................... GCCCATTCTTGAACTTCTTTAATTAATCCTTTGTTCATTGTT 58398 37 100.0 46 ..................................... GCCTATTTTCTTTTGCGAGGGGAGTGGGGCAAAGATTGATGAGTGC 58315 37 100.0 35 ..................................... TATACCCCATGATAGGACTCGAACCTATCTGTAGG 58243 37 100.0 45 ..................................... GCACAAATAGCGTCTGCGTCAACCATTGTGGTTATTATTGCCAAT 58161 37 100.0 41 ..................................... GGCAGGGCTGTGCTAAGCACAGTCACTGCCTTAACTATTTA 58083 37 100.0 40 ..................................... TATTTTTTGGTAGCTCAATACATAACGATTATTTGATAGA 58006 37 100.0 38 ..................................... AGAGCTTGTGGCATCTTAGGAATTTGTTTTGCCCTCAT 57931 37 100.0 41 ..................................... ACTCTCGGTGGTTACGTTGGATAGGATGGTTAAAGTTAAAG 57853 37 100.0 39 ..................................... GTTTTCAGTATCATCAAACAAATGTCCGGTAATAATTAG 57777 37 100.0 39 ..................................... ATCCCACTCAGTCGTCAGCAATCCTTGTATAGATTCAAT 57701 37 100.0 44 ..................................... CTTGATGAAATTGATAATCTATTAAGATCATCTTCTGATTATCG 57620 37 100.0 43 ..................................... AAATTTAATTTTCCTGATTCGTTTACGGAGATCACTCCTCGGT 57540 37 100.0 44 ..................................... TTAAACTTAGGCTCTAAAGGTATGCGTAATCAAAACTTAGCTTT 57459 37 100.0 40 ..................................... TAGACCTTTTTATACTCTTCCCAGAACTCCCATAAGTCCA 57382 37 100.0 41 ..................................... TTTACACGCCCCTAACCGTCTCCGAGCCATAACCTCACCAC 57304 37 100.0 44 ..................................... TAATATTGGTACGAGTGGTGTTTGTCATAAATATTGTTTTCGCT 57223 37 100.0 40 ..................................... AGACGAATTCACCCTTTATCGGTTTTCAGCGTTTGACGAT 57146 37 100.0 46 ..................................... TTGCCATGAATGTTTTAGCTGCTTTAATTTATAGTTTATTTTTTTC 57063 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 35 37 100.0 41 GTTGATTTCCACATTTACCCCGTAAGGGGACGGAAAC # Left flank : AGTGTAACCTTCTATCATCGGTGTTAAATAATAATTTATTACATCTTCAATTATTATTCAAAGATAACACAAAACATAATCCTTTTGTATAAAACTTATTTATTTTCTCTATCAGGTAATAGACTGCGATCGCACTTAATGTAATAAATGATTTTCTGTAATGTTGTGACTAAATGGTTTGTTCCTGTCCAATAATAATTGACTATATCTTGAAAGAATGAAATTAGTAGTTTATTAGTTGTAAAGAAAAATAACAGGGGGTTGTAAAAATGTCGCAGTTAGTAAATAATAAAGAAAGTTAGATTTTAAAGTTAATAAGTAAATAACTTAGCATTATTGCTTGGGTTCACTCTATAATTGTGCTTATTACCCAATAAACGTCTAAAACAGGTTTTTTTACCTTGATAATTTAATATCATTAAGAAATGTAAAGGACTACCTTGTAGTTTTTCGCAGACAGTTTGTAAAAACCATGTCTGACAAGGTTTCCAAAAGATAGG # Right flank : GACTCATGTAAAAAAACCCTAAAATAGACACAGAGTTAGAAATGATAAGATGAGTAGATATAGCAAAGATTGGAGAGAAATAACTACAGCAATAAAGGAAAAAGCCCATTAGAAGCGTAGTCAATGCGGTGCAGACTTCAAAAATAAATCAAGTAGTGGTAGCTCTCTGCAAGTGCATCACTGGAACAGAATACCAGAAGATAAAAGACCAGAAAATTTAGTAGCTTTTTGTAATACCTGTTATTTAAAATATCATCATGGCGGTAAAAGTAATATTCTTAATCGGTCAATTATCTCTTAATCTCTAAATGAAACACTTAAATATCATTATCTCTGTTATCTTTATCTTTGTTTTTACCTTGATAATGTTCGCATCTTCCCTTGTTTACGAACCAGTACAGACAACAGATAATCAATACTATGAATATCGAGCATTACATAACAGGGATGGCATTGGCAAATATTATCTTGGTAGAGAAATAGCGAAGGTGATGAGGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATTTCCACATTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 139135-137696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRR010000007.1 Cyanobacterium aponinum FACHB-4101 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 139134 37 100.0 43 ..................................... TTTAGTTGAGCGGAATTACATCCCCCACTTTAATATCTTTACT 139054 37 100.0 39 ..................................... TAACTATTAGATGCACATATCCCGATCCGTTCATAATCA 138978 37 100.0 43 ..................................... ATCTCTAAGTAACTTATAAAGTTTAAGTCTATGGATAATAATT 138898 37 100.0 37 ..................................... TATGAGGATGAAAGCAGGTAGTGGCATTGAGTGCATT 138824 37 100.0 43 ..................................... TGTTCCTCAAGAGTTTGAACTTAACGCATCCTTAAACTTGCAA 138744 37 100.0 40 ..................................... AAATAATTCCCTGCGCCATCACTATAAATTGTCATATATG 138667 37 100.0 37 ..................................... TGTCTTTTACCTTATTTTTTGTGCTTTTTATCACCTT 138593 37 100.0 40 ..................................... CTCTTTTTGTTAGAGTTATGAAGCGTTCGGGGCTGTTGAT 138516 37 100.0 37 ..................................... GGCAACTACTCGCTGCCCTATTTGTAACTGTGGAGAT 138442 37 100.0 39 ..................................... CTCTCACCATTTTCTCTGATTTTCCCCCTGTTTTCGTGG 138366 37 97.3 51 T.................................... TTATTTCTCAATAAATCCACAAATATTAGCGTCTTCCGTAAGAAGCCCCAC 138278 37 100.0 35 ..................................... TTAAGTTAGAGAAAAAATACGGCTTTATCAATACG 138206 37 100.0 43 ..................................... TCCGAACAACAAAAAAGATTGTTTGAGTTTGTTTAACCAGTAT 138126 37 100.0 36 ..................................... TTTCTAGGATGTAATCGTCAATAAAATCGTATAATT 138053 37 100.0 41 ..................................... CAAGAGGCAGAAAGAATATTAGGGGGTGAGCAATTAAGCTC 137975 37 100.0 42 ..................................... TGATACTCTGATTCACTCTCTAATATTGCGATCGCCTTTAAA 137896 37 100.0 47 ..................................... TCGGTCATAACTCCCACACGAATAATCTTTTCAGTTTTCATGATTTG 137812 37 100.0 43 ..................................... TGGTTTAAGTCGTGAGGGGTATCGGGATATATTATTAATTCAA 137732 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================== ================== 19 37 99.9 41 GTTGATTTCCGCATTTACCCCGTAAGGGGACGGAAAC # Left flank : TATTTATTAACTCACCTACATGAAGATAATATCGGTAAATATTATATCTATGGCGATAACATTCATCATTGGAGTGAAATTAGTCTTAAATTAATTTGCCAATTAACCACCGCAGAAAAAACTTTTGCTTTAACTTAGTTATTTTCAACATCTACAAAATAACCAAGAAGGAGAAAAACTTTTATCCGAATATCTTTATTAAGTTAAACTTCAATGGGAATATTCTGATTACCTAGCTTTGTAAAGAAATATTAACTTAACTTGTCAATCTGTCGCAGTTAGGAAATAATGGTTAGAAAGAGTTTTGGCAATAAAAAATTAGATAAGTTCCGTTTTTTGTTAGGATTCACTCTTATACTTACGGTATTATTCATTTTTACTCAAAAAAGCCCTTTTTTACCTTGATAAAGAAATAGTGTTAAGAAGTGTAAAGCATAATTTTGTATTTTTTCGCATACACTTTGTATAAGCAAGATGCAGTAAAGATTTCCAAAGGTAGG # Right flank : GTTATGTAGTAGGGTATGATGGGCGAATTTGCCTGCAATCTTAACATCCAGTGCGTATCAATCCTGCTACGGGCTATGGTATCGTACTCCTAATAAGCGGGTCGGTATGCATCTTAGTCATTACCGTTCTAGGTTGCCCCCCCCAATCAGTAGAACCAATCAATGAGTAGAAAATGTTACCTTCTGAAACTGTTAGTATTTGCCAACTTTCTGCCAACGATCTACCACTCATGGAGGGTTTATTAACTGTCTTTGGCGAGGCTTTTGATGAAGTTGATACCTATAGTTCATCACGTCCAAGCAGCGCTTATCTCAAGCAGTTGTTAGGCAGCGATTATTTCATTGTGCTTGCAGCGTTAAAAAATGGAGCGGTCGTTGGAGGTATCGCCGCTTACGAACTCCGAAAGTTTGAGCAGGAGCGAAGTGAAATCTATATTTACGATCTGGCTGTTGCAGCAGCACATCGACGCAAAGGCATCGCTACCGCATTAATCCAGGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATTTCCGCATTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 148392-146036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRR010000007.1 Cyanobacterium aponinum FACHB-4101 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 148391 37 100.0 39 ..................................... TTCGGCATGGGGAGAATTACAATTAGAATCTAATCCTGA 148315 37 100.0 38 ..................................... TCTAAATTGACACTTGAAACAGATACCCCTTCAATCAA 148240 37 100.0 38 ..................................... GGCAATAGCGAACCTTTACTGCTCACCGCTTTTGCCTG 148165 37 100.0 42 ..................................... TTGCATAGCAAGGAGGGTAGGTACTTTTTTTTATTTAACTAG 148086 37 100.0 37 ..................................... GTTGAATTTCATCTAAACTAATCCCCAGCCACATTGC 148012 37 100.0 38 ..................................... GCGAAGGCAGAAGGGAACTATTATCAGCAACAAATTAA 147937 37 100.0 45 ..................................... CTTTTTTCTGGGAAAGTATCAAATCCCCTTTGGCTATGGCTTCCA 147855 37 100.0 35 ..................................... GTAAATCATAAACCTCTAACAATCCCTCTTTTCCC 147783 37 100.0 40 ..................................... GCAAAGTCAGATGAGACAACTGAACCAGCAACACAAAGCC 147706 37 100.0 39 ..................................... ACGAGAGATAATGACCAGCTCCATCAGTGGCGATCGCAT 147630 37 100.0 43 ..................................... TTCTTATTTTCTGTGTCTTTAGTGGTATCTTCTCCTTCAATTT 147550 37 100.0 41 ..................................... CCTGTTTGATTTCTGTGTCAGCAGAAACAGGGGTGGAAGAA 147472 37 100.0 43 ..................................... TCCAGACATTGTCGCAAAATCCGACAGTGTTAAATTCCCCAGA 147392 37 100.0 46 ..................................... TTGCCAGTCGGTAGATGGTGAATTAGTAGAAGGGGAAGACTTACCT 147309 37 100.0 42 ..................................... TGCGAATGGTGTCATCGTCATTCAAAACGAAGAAATCTTCAA 147230 37 100.0 44 ..................................... TTACCGTTTCAACAGTCTCAGTTTCTTCAGAAGTTTCCTCCCAA 147149 37 100.0 41 ..................................... TACACGAATAATAGACCAAAGAGGAACGGGGGCATTGCCTA 147071 37 100.0 39 ..................................... TCCTCCGTAGTAATTTTCAATCGTTCCTATTTGCTTTGA 146995 37 100.0 33 ..................................... TCTGTTATTCAATCCTAGTGCTTTAGGGATAAG 146925 37 100.0 40 ..................................... ACCGACACTGACTGGCACAAAAGAAAAATCAAACAGTTAA 146848 37 100.0 37 ..................................... TTATCTCTGTAGAAGATACTGTTTGAGGCCACGTTCC 146774 37 100.0 42 ..................................... ACGTGTACTAGAAAACGAGGTGCAAGTTCTTAAAGGTATGGT 146695 37 100.0 38 ..................................... GCTTCCGTTGAAAGTTTTAATCTTGTCTCAACTTCAAT 146620 37 100.0 46 ..................................... TTGCAGTGCCAACAGCCTTCCCCATTTTTATGGGTAACTGTAATAG 146537 37 100.0 38 ..................................... CATGGGAGAGAGTATGAGGGTCAAAGTTATCTCCTTCT 146462 37 100.0 37 ..................................... ATTCATATTTATATATACTGCTAAGAATATCTCTATT 146388 37 100.0 44 ..................................... ACGGGCAAACTACTATGTTTAAAGTTGTGTGGGATACTGTTATG 146307 37 100.0 41 ..................................... TACTATATTCTTGATTCAAAGTTAATTTTAAAACCAGAATA 146229 37 100.0 45 ..................................... CTGCTGCTTCTAAATGAGTCTCTTTACCTGAATGTTTCACAGACT 146147 37 100.0 38 ..................................... ACTACTTCTGCTTGTTGATCTGCATGAAAGAAAGATAT 146072 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ============================================== ================== 31 37 99.9 40 GTTAATTTCCTCATTTACCCCGTAAGGGGACGGAAAC # Left flank : GACGTACTCAATTGGCAAAATTATTAGAACAACATTGTGAGAGAGTGCAGTATTCAGTTTTTGAATGTCCTTTAGATGTAAAAAAATTAGAGCATCTTCTCTCTACTCGATGGTTAAAAGTTCTAAATTTACAGGAAGATAGCCTTAGAATTTATCCCCTAGATGCTTCCGCAAAACAAAAAATCAAAATTTATGGACTGAAGGATAATCCTCCCTACGAGTCTCCTGACTATCTTATCTTGTAAATAAATGTTAAGTTGACTTGTCAATCTGTCGCAGTTAGTAAATAATAGTTAAAAAGAGTTTTAGCAAAAGAAATTTAGATAAGTTCATTTTTTTGTTAGGATTCATTTTTATACTCAGAGTATTTTCAGTTTTTGCTCGAAAAAACCTTTTTTTACCTTGACGAAAAATAGTGTTGAGAAATGTTAAGCGTTATTTTGTCGTTTCTCGCATACATTTTGTACAAGCAAGATGTAGTAAAGGTTTCCAAAGGTAGG # Right flank : GCTTTTGATAAGTTCTACCGATGTTAAAGATGTTAAATAAGATATAACTGAAATTTCAGATTAGTGTATTAATACTAAAAAAGAAAATTTTAAAATCGATTTTAATAAAGTTTTCATCAATTCTTATTACTTTTTTCTGTTTTCCACCTTCAGCAGTCCATTTTTGGCTATATGAAAATCTGACCAAGTATAAAGAAGAGTCACTCATAAGCCGGATTCTGTTCCTTTAAATAAATTAAAGGGGTAGTTATCTATCTGGGATGAATATTACTAATCACCTCAAGCGGTACACCAAAAGCGGAATCGGGAAAAGACCAACCATAATTCCTTCGACCTTGCTCCCAACCGGGGTTTACCGAGCCAGTACCTCTCGATACTGCTGGTGGGCTCTTACCCTCACCTTTGCACCCTTACCTCTAATCGGAGGCGGTATTTTTCTGTGGCACTATCCTCACGCTCACGCGCACTGGGCGTTACCCAGCAGGTTTGGTCTTTCGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATTTCCTCATTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 36747-35215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRR010000001.1 Cyanobacterium aponinum FACHB-4101 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 36746 37 100.0 34 ..................................... AATCCATTACAATTTTATTCAGAAACTACCGCTT 36675 37 100.0 35 ..................................... AAGGTCGCCACTCCTTCCTTAACGGCGAAGGTTGG 36603 37 100.0 33 ..................................... AAGAATTTACTAAAGTATCTTTCCCCGAACCTT 36533 37 100.0 48 ..................................... TCTTTTTCTAATACGGAAGCGATCGCTTCTTTTGCTTGGAAACCGAGA 36448 37 100.0 38 ..................................... TGAGGGGCTTCTATTTTTAGTAATTCTTTAATTTCCAT 36373 37 100.0 34 ..................................... ATTGAGAATGTATCGAAGAAAAAAGTTACTAAAA 36302 37 100.0 38 ..................................... ACATAGCCCAAATCTCTTTTAAGTTCATTTTCAAATAG 36227 37 100.0 38 ..................................... GGAATTTACAAGGAATGCACAGACCGTAAAAACAAGAT 36152 37 100.0 37 ..................................... ACTTCCTGTTCAAGCCATCTATAAATAATTTCTGCTT 36078 37 100.0 35 ..................................... TTAATCGTCTGTAGATAGTGCCTCTGGAACATTTA 36006 37 100.0 37 ..................................... ATTACCAGAAAAATTGTATTGATAAAACCAGAGAGCT 35932 37 100.0 34 ..................................... CGATTGGCAAAATTTAGCCACAACCCCCACTGTG 35861 37 100.0 35 ..................................... CCTGTCTTCGCCTTAGAAGGTGCGATTGTTGGTAC 35789 37 100.0 45 ..................................... TTTAACAAACCTGATGAAAGAATAATCTTTTATTATGCAGGTAGT 35707 37 100.0 33 ..................................... TTTGGATTTGTGAATTTTGATTAGACTTTCACC 35637 37 100.0 40 ..................................... CATTATTCTCATTTCCATCTAAGTAAATATAAATATAATC 35560 37 100.0 36 ..................................... ATACTCTATTTATCGATTTGAATGTGAACTATTTAG 35487 37 100.0 36 ..................................... TAACATCCAGATTTTGAAAGAAACAGAACACCATCC 35414 37 100.0 34 ..................................... TTTCCATAAAGCTAATGTAAACGAGGTATTAGAA 35343 37 97.3 55 ....................................T AAGGGATTGAAACAAATGGGAATGGAGAAACCGCACAGCCGAAGAAATCCCGCAG 35251 37 97.3 0 ..........C.......................... | ========== ====== ====== ====== ===================================== ======================================================= ================== 21 37 99.7 38 GTCTAAACTCTAATTAATACCTATAAGGGATTGAAAC # Left flank : GTATGTAATTATTAGCTATGATATAAAAGACAATAAGAAAAGGACTAAAATTTACAAAATATTAAAATCTTATGGTGAATGGGTGCAGTATAGTATTTTTGAATGTGAACTAACGGAAACTCAGTACGCAAAATTACGTCATCGTCTCTCAAAATTGATAAAAGACGATTCTGACAGTATTCGTTTTTATTTTATGTGTAAATGTTGTCAGGGTAAAATAGAACGTATTGGGGGTGAAATGCCAAGGGATAACACTATTTTTGTTGTCTAACTAGCGTAAGGAGTAGGGTGTAAAAAACATAATCGGCTAAAAAATTCATAAAGTCTTTACCCCGTATAGTTTACGAATATTTTATTTTCTTATAGCCTTACGCTTCTTTATTTGCAAAGATTTCAGCGATAAAGGGTGGACATTAAAGATGAATTTATTTATAATCGAAGTTAGGCTTACGCGATCGCACCTTGAAAACTTGATATTTCAAAGGGTTCGGTTATGGGCG # Right flank : AGGTAAAATTAGAGCAAGGATTAGGAGTAAGACGAATACTTCTATCCTTTCAGAGTTAACAACTTATTGTTAACAACTTATTGAGGATTTTAGCATGAGTGCCTTAACAGATAATGACTTAAAAGAGTTAAAGGATTTAATTAACTCAAAATTTGAGCAAGTCGATCGCAAATTTGAGAAGGTATTTGAGGAGTTAAGCGACATAAAAATAGATGTTACCACAATTAAAACTGAGGTTAACGGATTGGGAAAAAGGTTAGACGATACCAACAAAAGAATTGATAACCTTGAGTTTACTAACAGAGGTATTTTTATAAGTGTTATTGGTGGGTTACTTTTAGCGGTTATCACTTTAACCATTAAATTTTTAGCACCACCAATCAGCTAATTTACCGCTTCTTATCGACACCGTCCGTATCTAGCACAATAAAAAACTTCACCAAAGGGCGATCGTATATCCTCATCAGTCTATTAGTACATTTACTTATTGCCCAAACTCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAACTCTAATTAATACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 184986-188740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRR010000001.1 Cyanobacterium aponinum FACHB-4101 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 184986 37 100.0 44 ..................................... AGAGTATCAAGTTTATGATATACTGCATTCACCTAAGACTCAAA 185067 37 100.0 38 ..................................... ATGATGAACCCAAAAAGCAGGATTTATTTGCCGATAAA 185142 37 100.0 40 ..................................... CTTGAGAAGCTGTAAGAGTGAATTCAAGAGTGGTGATAGA 185219 37 100.0 37 ..................................... ATTTTGAAATGTACGCAGATTTATACCCCGAAATAAA 185293 37 100.0 43 ..................................... TGGAACTGCTTTTTCATTGGCAAGGTAGCTGATGATTCCCAAA 185373 37 100.0 36 ..................................... CAGGATACTCTAAAAAATTTTGCTTTTTGAATCGAC 185446 37 100.0 40 ..................................... GTTTACCGATCGCAGTTTATAGACTTAAGATCGGTTCGGT 185523 37 100.0 44 ..................................... TTGGTTATAAAAGTCCTCTCCTTTCAACACGAGCATGAGAGGAC 185604 37 100.0 42 ..................................... ATCCAAACTAATTTATCAGTCGAAGAAAGACAATCCACAAGG 185683 37 100.0 39 ..................................... TCAACGTAGTGTTTATCATCAATCAGTATCTGCGATCGC 185759 37 100.0 44 ..................................... CGGTAGTATGCTTGAAGTCCCGAGCTGAAATTCCGCCCCTCCAT 185840 37 100.0 35 ..................................... ATTTGTTATAAAAGCTTGGAAAGACCGAATATGTA 185912 37 100.0 42 ..................................... CTCTACGGCCGTCGAGTACCCGTCTCCGTCTCGCACTACGAT 185991 37 100.0 40 ..................................... GGTCTACACTGTTGGATACAACTACAGTGACTCATTAAAA 186068 37 100.0 40 ..................................... AGCTTTCGCTGGACTGGATGGGTAACGAGACATTGTAGCA 186145 37 100.0 37 ..................................... CAATTAATTTTGATCACAATGACCAGCCTTTTTTGCT 186219 37 100.0 45 ..................................... ACTGGATGAACCAGGCGTGGATGGTTTATCTGAATGGATTTATCT 186301 37 100.0 43 ..................................... ATTTATTAGATGGATTGGCTAGTGCGATCGCATCTAATACAGA 186381 37 100.0 37 ..................................... CTAATAACAAGAAGGATTGCGTAAGTATTTTTGAAGA 186455 37 100.0 44 ..................................... GAGAGAAAGTACAGAGACTGGACAAGGAATGGATACGTATATTT 186536 37 100.0 43 ..................................... CTCCGCTGATGTGGATTTATTCCATGTCAGCCTTAGTGCTGGG 186616 37 100.0 36 ..................................... TTAGGTAGTAGCCTGTATAAGGGAGAGAGACGTAAG 186689 37 100.0 42 ..................................... TCTTTGAGGTATGGTTGTTTTTAGGGTCAGGATAGGGTCAGG 186768 37 100.0 47 ..................................... TTGTGGTTTTTATCTCAGTGACAATAGATAGTTACTAGCTTTTGACG 186852 37 100.0 36 ..................................... TTTTTACATGAGCACATTTATTAAATCAAAGGAGAA 186925 37 100.0 44 ..................................... TCACCGCAGATGCAGATGCAGCGATTGGAGATACTACGATTTCC 187006 37 100.0 43 ..................................... TTGTGCCATTGTCTAGTATAGATTGCTGTTCCATTTTCGCCCC 187086 37 100.0 37 ..................................... TTTAAAGGTGTGCGTAATATTATTGCTGAGCATAAAT 187160 37 100.0 39 ..................................... GTTATCATCTTGAGCTTCAATAGCTGTTTTATCTGTAAT 187236 37 100.0 41 ..................................... ATTCAATGGCCTGATTTTCCATTCACCAGTACATTGGCGGT 187314 37 100.0 37 ..................................... GTCCAACGTTTAGCATCTTGGCTATTTCTTCAATGGG 187388 37 100.0 39 ..................................... GGCTTAAAGGAGCAGAGATATTATGGGGAGATGCTATGC 187464 37 100.0 41 ..................................... TTGAGAATATTCGCTACGTCCAAACCGAGATTCTCTGACCT 187542 37 100.0 42 ..................................... TTAAGTTAGTACCTAACTCTTTACTAGTCTCTGCATTTAAAG 187621 37 100.0 40 ..................................... AAGAAATAACTTTTTTATACTGTACAGGACTATATTCTAT 187698 37 100.0 38 ..................................... GCTTTTTTATTGGAATTTTTCCCTCCACAGCTTCTCTG 187773 37 100.0 43 ..................................... CCTAATCGCTTCTTCACTAGGTGCGTGTATCTCTACCTCAAAG 187853 37 100.0 41 ..................................... TTACATAGTAAACTTATTACACGATGCTAAAGGAAGTAAAT 187931 37 100.0 42 ..................................... GTTGGTTTTAGATACGAAGAATGATACCATGATAATCTCAAA 188010 37 100.0 38 ..................................... TTTAATTGTTGTAAAACTTCTTTTCTTGTTGTCGCTAC 188085 37 100.0 44 ..................................... TCTCTTTTGGTTAGGTCTATAACCCTCAAAAGCACTAAATCCCA 188166 37 100.0 45 ..................................... TTAATTAATTAGGACAATACTATTATATTTATAACGCCCCTAATA 188248 37 100.0 42 ..................................... CGATAACAACTTTCTTTTAAGTGGCATTCCCTGCCCATACAT 188327 37 100.0 34 ..................................... TTACTTATTATCCCATATATGGAAATTAGAAAAT 188398 37 100.0 36 ..................................... CTGCTATTTTTTCTGCATTTCTCGCTGGGGTTTCCC 188471 37 100.0 42 ..................................... TTTAAGTTTCTCTCATCTATTGATAACCTGTAAATAAGGTCA 188550 37 100.0 40 ..................................... TTGACCTACTTGTAACTGGGAAGATTTGTGAGAATAGTAG 188627 37 100.0 40 ..................................... AAAATTAAAATGATGTGTAGATAGCATTCAAATCTGGATG 188704 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 49 37 100.0 40 GTTCGATTCCACATTTACCCCGTAAGGGGACGGAAAC # Left flank : TAACCTAAGCAAAAGGGTAAAGGCTTTGTTTAGGAATAAATTGCGATCGCACTTAATGTAATAAATGATTTTCTGTAATGTTGTGACTAAATTGATTATCTTCGGCAAAAGCTACTAACCATTCTTTTAAATTGCTATATCGCAACTTATCTTTTACTTGTTGTCTTACCGCAATGGCTTGTTCCTGTCCAATAATAATTGACTATATCCTGAAAGAATAAAATTAGTAGTTTATTTGTTGTAAAGAAAAGTAACAAGGGGTTGTAAAAATGTCGCAGTTAGTAAATAATAGTTAGAGTTAGATTTTAAGGTTAGTAAGTAAATAACTGAGTGTTAATGCTTAACTTCACTTTTTAATTGTGCTTATTGCCGAATAAACGTCTAAAACAAGTTTTTTTACCTTGATAATTTAATATCATTAAGAAATGTAAAGAACTACTTTGTAGTTTTTCGCAGACAGTTTGTAAAAGCTATGTCTGACAAGGTTTCTAACGGCTAGG # Right flank : CGGCTCAGAAAAAAAAGCCCTACAATAGATACAGAATTAGAGATGATAAGATGAGCAGATATAGCAAAGATTGGAATAACATTGCGTGTGCCATCAAACAAAAAGCCGATTGGAAGTGTAGTCAATGTGGTGCTGACTTTAAAAATAAATCAAGTAGAGGTAGTTGTCTGCAAGTCCATCACTGGAACCGAATACCAGAAGATAACAGACCAGAGAATTTAGTAGCCTTATGCAATATATGTCATTTAAAATATCATCGTGGCGGTAAAAGTAATATTCTTATCGGTCAATTATCTCTCAATCTATGACTTATCCTACTTGGTATCAAGAAGCGATCGCGCGAGGTATTGATTTCATTGTAATTGTTTACGAGAAAGCAGAAGGCTTCGTATTTTGTCCGAGCAACCTAGAAACAACTTTCCGTGTTGGCGGGGACTATGATGGTTCTTTTTATACTAATGGAGAAGGAGCATTAAGACATTATTATAATTGTCTAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGATTCCACATTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 230903-229851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRR010000001.1 Cyanobacterium aponinum FACHB-4101 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 230902 37 100.0 35 ..................................... TACTTGATTCTTATTCAATATCTTGTAAATTTAAA 230830 37 100.0 35 ..................................... GAAAAACAATTAGACTCCCTAGAAAAAGATATGAG 230758 37 100.0 39 ..................................... CTGCTAATTCAGTAGATAATATAGTTGTTAGTTCGTTTC 230682 37 100.0 34 ..................................... TGACACGATCGCTGGAATTGTCTCTGCTATGACA 230611 37 100.0 36 ..................................... AAAACAAATAATTTCCCCTATATTTCCTTCAAAAAT 230538 37 100.0 35 ..................................... GGCGACTACCTATTTTCCAGTAGGGATGCCTTACA 230466 37 100.0 36 ..................................... AACCTAGAGTTGACACTTTCTTTTTCTCGCTATATA 230393 37 100.0 34 ..................................... TCAAAATAGCAATACTTTAAATGATCAAATTAGA 230322 37 100.0 35 ..................................... TAAGTCACTTATTCTTAAAGGGCTAGTCAACAGCC 230250 37 100.0 33 ..................................... TTGTTACAGCAACCAAACAAGCTAATATAAAGC 230180 37 100.0 39 ..................................... TGTCTTGCCTGATGACCAACGAGAGATTCTACCCCAATC 230104 37 100.0 35 ..................................... AATATTGGCAGAAGCAAGGGAAAGATCATTCTGAT 230032 37 100.0 38 ..................................... TAGAAAAGGGGATCGGTGATACCCCAAATAAAAGTGTT 229957 37 100.0 33 ..................................... TTGATTGCGATCATCAAAAATAAAATAATCCTC 229887 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 99.8 36 GTTTAAACTCTTATTAATACCTCTTAGGGATTGAAAC # Left flank : CAGAAACGCTAAACTGTAGATTAGATTCTATTTTACCCTTGGCTGTATAGGTAGCTGTAGGGGTTTTATAGGTAATGTCACAGGTATAACCCGGAAAATTCTCATCCCATGTATAGCGATTTTCGTAAGCATTGCGAAAAAGTTGTTCTGCTGTTAAAGTTTGAGTCATATCTTGATTGTCCTATCTTTTTATTTTCTGATTATAACTCTTTTATTTGAGGGAGTATAAAAATATAACTATATAGAAACATAGGCAATCAGCAATATAAGATATGCGTAAGGGATAGGGTGTAAAATTAGACTTGAGAAGATTTACCTCACAACTCTATATATAGTCTAGTTTCTACCAATTTCAAATTTTTATAGCCTTACGCTCTTTTGTTCACAAGGGTTTTCGTTATTTTTTTTGGACGTTGGTATTGATTTCATTTATAATTATGGATAGGCTTACGCAACTGTACCTTGAAAAGTTTATATATCAAAGACTTCGATCGTGGGCG # Right flank : TTCTTTTTTATGATGGTATGACTTAATAACATTTTGGAGGTGAAATAATGACGATCGAACAAATGATTAAATCCTTTGACCAATTATCAGCACAAGAGCAAGATAACCTATTAGAAATTCTGCGTCAACGTCGCTCTCAATTAACAAAGGGTGAAGATTTAGCTAATGAGAGTGAGTTAGAAGAAGCGATCACCCCTAGCACTACTAAAGTGGAAACAGTGGATGATTTAAAAGTGGATTTAGGCAAGGAAAAACAAGGTTTTTGGTCGGCTTTACAAGATTTTCGCCGTCGGGTTGATTTAGAATCTCTGGATGATGATACTTTTGACAATTTACGAGATAAATCACCGGGTAGGGATGTCATTTTATGAGCCTAAAATATTTGTTAGATACTAATATTATCTCGGAAGCAAAACGTCCTTTACCTAATCAAAATGTCATAAAAAATCTTAGTTTATATTCACAGGAAATAGCCACTGCTTCGGTGGTTATTAGTGAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTCTTATTAATACCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //