Array 1 243074-241287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUN010000044.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FW-S1-Mar NODE_87_length_732144_cov_76.299026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243073 29 100.0 32 ............................. TCGAAGCTGATTTTCAAGATGCGCGTAACGGT 243012 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 242951 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 242889 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 242828 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 242767 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242706 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242639 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 242578 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242517 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242456 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242395 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242334 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242273 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242212 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 242151 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242090 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242029 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241968 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241865 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241804 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241743 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241682 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241621 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241560 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241499 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241438 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241377 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241316 29 96.6 0 A............................ | A [241289] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261191-259332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUN010000044.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FW-S1-Mar NODE_87_length_732144_cov_76.299026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 261190 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 261129 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 261068 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 261007 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260946 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260885 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260824 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260763 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260702 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260641 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260580 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260519 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260458 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260397 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260336 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260275 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260214 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 260153 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 260092 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 260031 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259970 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259909 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259847 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259786 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259725 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259664 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259603 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259542 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259481 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259420 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259359 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //