Array 1 418-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000101.1 Allochromatium vinosum strain MT 86 scaffold0101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 417 28 100.0 32 ............................ TCGCGGGAGCAGGCGCTACACGCCGCTCAGGG 357 28 100.0 32 ............................ GCACGGACGCGGCCTTACCGGAGAGAGCCATG 297 28 100.0 32 ............................ GAACTGGCGCAGGTACCCCACACGGCGCGCTA 237 28 100.0 32 ............................ GTCGGCGCGGCTGTCGGGCTGGGCGTCGGGCA 177 28 100.0 32 ............................ TATGCCATGTGGATCAGCCCGAGCTTCCACCT 117 28 100.0 32 ............................ CACGCCTCGATAAAATCAAGTTCCGGGGACCG 57 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GAAATGATGTCTGCGACTCAGGATTCTGAGCTATG # Right flank : AAGTACACCATCGGCGACGCCTACGACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 367-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000102.1 Allochromatium vinosum strain MT 86 scaffold0102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 366 28 100.0 32 ............................ TCAAAGCCGCCGAAGACCAAGCCCGCCGCGCC 306 28 100.0 32 ............................ AGCGTCGGCCTGGGGCGCGAGGCCATGGCCGG 246 28 100.0 32 ............................ TGCACGCTGTCCCGTCCGGCCAGATCCACAGC 186 28 100.0 32 ............................ GTGACAACATCGTCGGCCACGTCCTCGCGCTC 126 28 100.0 32 ............................ TTCGAGGGGGCCACGCAGCGGCTGAAGAACAG 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 ATTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GGGATAGACCGTGATCATCGGCTCACC # Right flank : ACAGGGCGGTCGGCGCGGTAGATGTGCAGGATCATTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1168 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000026.1 Allochromatium vinosum strain MT 86 scaffold0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ ATCCAGGGAAGTGAGGCCGAAGTAGCCAGAAG 61 28 100.0 32 ............................ TCAGTCATGAGGCGTCCTGTCGCACCCCCGCA 121 28 100.0 32 ............................ TGACACGCCGGGTCGCTTGGGTTCATGCCGAT 181 28 100.0 32 ............................ TGGACATGCGTCGCGACCGCGTGCGCAATCCC 241 28 100.0 32 ............................ AGGTGCACAGCCGAGAGATCCGGGAGCGCGGG 301 28 100.0 32 ............................ AGTGAGGGCTACAGCACCGAATTCACGGCGCA 361 28 100.0 32 ............................ ATCTATCCGCCGAGGTCGACAGCCGCCCAGAC 421 28 100.0 32 ............................ TTCACGCCAGGGCAATAGATGCGCGTGAGCGC 481 28 96.4 32 A........................... TGATCCCGAAGCTTGAGCGCGAGGCGATGGAG 541 28 96.4 33 A........................... ACGTCGGTTGCAGGCCACGCATCCGCCGATCGG 602 28 96.4 32 A........................... GACATGAAGCTCCCCATCGCCGAGCTGCGTAC 662 28 96.4 32 A........................... TCCAGCGTTTCGACAGACCAGGAGGGGATGAC 722 28 96.4 32 A........................... CGTCCGGCAATGTCAGGTTCCTGGACACCATC 782 28 96.4 32 A........................... ATGAGCCACTCGACCCACGTCGGGTTCAGACT 842 28 96.4 32 A........................... AGAAGCGGCGTCTATCACGTTGTTCGCCGAAC 902 28 96.4 32 A........................... CGGCGTCGCGTCCCAGCTTGGCCGCCTTCGGC 962 28 96.4 32 A........................... GTGTCACTGAGGCCCAGCGGGCGGCTCAAGCT 1022 28 100.0 32 ............................ TGGAGATCAAGAAGCCGGGGCGCAAGAAGCGC 1082 28 100.0 32 ............................ GGGCGGTCATGTGCTGTGCAGCGTCCCAGGTC 1142 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.2 32 GTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : | # Right flank : ATCATACAATTGAAGTTGTTGCACCTTGTAATGGTGCATCTGGAGGACTGTACCAATTCAGCTTATCGCGTAACTTGACGACCTCACCAACGATCAGGAGTGTCGGCGGCGACGGCGGATCGGCTTCGACGAGTTCGCAAATCGTCGCCAGCGTCCCCGTGTAAACACGTTGCAGATGTGTCGTACCCTGCTGGACAAGGGCGATGGGCATCTCGGGGGGGACACCATGCGCCATCAGCCGCTCGACGATGACCGGCAACCCCACTAGCCCCATGTAGAAAACGACGGTCTGATGCGGTTGAGCGAGCGCCGGCCAGTTCAGATCGATGGTGCCGTCCTTCAGATGCCCGGTGACGAAGGTCACGGATTGCGCATAGTCGCGATGCGTCAACGGAATACCAGCATACGCCGCGCAGCCGGATGCTGCTGTTATACCGGGAATAACCTGAAAGGGCACACCCTCGGCAGCAAGCGTATCGATTTCCTCGCCGCCGCGCCCG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 875-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000041.1 Allochromatium vinosum strain MT 86 scaffold0041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 874 28 100.0 32 ............................ TGCACCGGGAGCTGGGCGAGGAAGCGCTCCAG 814 28 100.0 32 ............................ AGAGGGACAGAGAGGATAAGCGTTGCAGCAAC 754 28 100.0 32 ............................ TCTGGCGCAGTGCCGGCGGCACCGCCATTGAT 694 28 100.0 32 ............................ CTCGACGGGCGCGACGTCACGCGCGGCTACGT 634 28 100.0 32 ............................ AGCGCGGACGGGCCTCGAAGAGGGCGTCCGTC 574 28 100.0 32 ............................ AGGAGCGCGATCTCGGTGACGGCCTGGGTGTC 514 28 100.0 32 ............................ AACCGCGAGAATGCCTCGGGAATCGGGATCAG 454 28 100.0 32 ............................ AAGTCCCGTCGCGGCATCCAGCTCAAGTCTGG 394 28 100.0 32 ............................ TCACGGTCCCTCTGAAACGGTATCGCGCGCGG 334 28 100.0 32 ............................ TATCAGGAGGCCCACCCCGGCACGTCCTATTC 274 28 100.0 32 ............................ TGCATCGCGGAGGTGTTCTGCTTGTAGTCCTC 214 28 100.0 33 ............................ TGGTACGGTATTAGGGCTTTGCCTGGACTCCCA 153 28 100.0 32 ............................ ATGACGCGCCGCGCCTTGGCGTTGGTCAGCGC 93 28 100.0 32 ............................ AGGCCGACGCACGCCGATGAGCGGAGAAAGAG 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : TACGGACTTGGAGCACTTGATGGGAACTGCGTGGCTCAGTGGAATGCATGACCACATTGCCACCGAAGGTCTACTCAGGGTTCCTGAACTCACGGAGCATTGCACCGTGCGTCGAGTTCAGGCAAAAAGCAATCCTGAGCGGCAGCGGCGTCGTGTAGCACGTCGCCACGGCATCAGTCTGGAAGAGGCGGCGCGACTGATCCCAGGGGAGATTGGAGAACGCCTGGATCTTCCGTTTGTAACTGTCAACAGCAGGAGTACAGACCAGACTTTCAGACTGTTCATCGAGCAGCGATCGAATGTTAGTCGGCCTGAGCCTGGCAATTTCAATCAGTACGGACTCAGCTCAACAGCAACCGTACCCTGGTTTTAACCCTTTTTTCTGTATCACCAAAGTGATTTTTAAAATCAGTGAGTTGAAAGCTCACCGAAAAAAGGGCTATGTTGCGCAAAAACAAAAAAGATCTTTAAAAACAAAAGCATTGCAAAATTAATGTATA # Right flank : AGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 212-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000048.1 Allochromatium vinosum strain MT 86 scaffold0048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 211 37 100.0 37 ..................................... GCCCATGCATCATAGGCTTCGGCGAATCCGGCTTGAT 137 37 100.0 36 ..................................... CAGGGCGGTCACGGATTCGGGGACAGAAGGCTTAAG 64 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 37 GCCGCAATAGACAATCCACTACAACAGGGATTGAAAC # Left flank : TGCTTTGGCTCAAGGATGGGACGATGGCGCCACTTGACTACAAATACACAGAGGCACGGGATCAGGTTTTCAAGACCCATGAGACACAGGTGACGCTTTACGGTATGTTGATCGAAGCTGTCTACCAACAGCCGGTACAGCGTGGATATGTGGCCTATGTGCGCGATGGTAGTCAGCTCCAAGAGGTTGCGATTACAGAAGCCGCCAAGCAGGAGATGCGCTGTCTTGTGGAGCAGATTTTCGCTATCATCCGAACCGGTCGGCTTCCCGCGCGAGCGTCTTCGCGCTTACGTTGCGAAGACTGTTGCTACAAAAATATTTGCGTCTAGCCATCTGGCTTTCGTAACTATTTGATCTATTGTAATAAAAAAGAAATTTTTCGATGCAGGCAACGACTAAAAAAGTCATTTCGAGGCAAATTCTATGAGCGAAATTCTCAAAAAGACGGTATCTGAAAAAATCTATGCTTTTGATCGAAAAGGCTTTTTGGTGAAGATGCG # Right flank : CAGGTTCTTGTACCCACGGGAGTGTCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATAGACAATCCACTACAACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 1-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000052.1 Allochromatium vinosum strain MT 86 scaffold0052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 1 18 78.3 50 -----.................. CAGAAGGTCGGCATAGAACAACGTGGGCTTCTGCGCTGCCGCAATAGACA 69 23 100.0 51 ....................... CGTCATAGACCAGATCGAGCGTGGCGCGCTGGCTCTGGGCCGCAATAGACA 143 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =================================================== ================== 3 23 92.8 51 ATCCACTACAACAGGGATTGAAA # Left flank : | # Right flank : AAACCGTCGATGAGCGGCTTTCGCTGGTCTTCAATGGCTCTGATTGCCAGGGCTTGCATACTCAATCTCCACCAACACCAACTCCCACCGCTCACACCGTAACCCCTCATCCCCCTTCGCCGTCCTGACCAGCACAGCCGCCACCCGCACCGCCACGATCGCCTCCGCCGGTGGCTGGAACTTCGCCGCCATCCGCGCGACCACAACCCCCTGGCGATCGGCCAACTCCCACCCCGGCTGTCCATCGCGCCGGGTCATCGGACGCAGTTCGAGCGGATCGCCGACCTCCAGGGCCGCCAGCGCCCGATGGATCGGCGCATTCGGGGCGAATCGGCCCGGCCAGTCCAGATAGACCATCGAGAGATCGGCGACCCAGGTCCGGTGATCCAGCCCCGGTTCCAACTCCGGCACCGTCGGTCGCGTGCGCAAGGCCAGCCCCTCGGTCGCGCGCACGAAGGGATGCCGCCCGTCCAGCCGCTCGCACAGCGTCAGACTGCGCC # Questionable array : NO Score: 7.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:-0.50, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCACTACAACAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 1359-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000076.1 Allochromatium vinosum strain MT 86 scaffold0076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1358 28 100.0 32 ............................ AGGGTGATGGAGCATAACCACTGCATCAGGCG 1298 28 100.0 32 ............................ TGGCGCCGGCGCCCAGTCGCTGTCATCGTCGA 1238 28 100.0 32 ............................ GACAGCCGTGACCGCCCCGTCACGCGCCGCAC 1178 28 100.0 32 ............................ TATAAAAGTCCTTCGTGACCTCGACGCAATGC 1118 28 100.0 32 ............................ AGCGGGCGTGGCGGTCTTCGTCGTCCCATTGG 1058 28 100.0 32 ............................ TTGGCTCGCTGCATGATAATGCGTGCGGCGCG 998 28 100.0 32 ............................ CTGCTGGTCGGCGGGTTCGCCGATGCCATGCT 938 28 100.0 32 ............................ AATTGGTCCAGGCGTTTCTGCCCGAGGCAACG 878 28 100.0 32 ............................ TTCAAGGTGGATGGTGGTCATGCGTCCTCCGG 818 28 100.0 32 ............................ AGGGGCGGATAGCTAGATCGAGCCGCCGCCAT 758 28 100.0 32 ............................ CTCGGCCATGATCGAGCGCATGTGTCAGGGCA 698 28 100.0 32 ............................ GACAGCCTGGAGCTGAGCGCCCATTTGTCTAC 638 28 100.0 32 ............................ TGGATGCGCGCCTCGACGATTTCGGGCAGGAC 578 28 100.0 32 ............................ TGCCGGACGGCACGCGAAAGGTGCAGGTCCAG 518 28 100.0 33 ............................ ATTGGTGGATCGCCGACACCAGAGCGCCCAGCT 457 28 100.0 32 ............................ ATCCTGGAAAACCAACATGAGCAAGAGTCCGG 397 28 100.0 32 ............................ ATGCAGGCGGCTGGAGTGATTGCGGTCGAGGC 337 28 100.0 32 ............................ TGTCGAGATATACCGACTGACCGTCGGCGGGT 277 28 100.0 32 ............................ GGCTGACCGCCGGCGGGTGTGGGCATTGTATA 217 28 100.0 32 ............................ ATCCAGGGGGCTGATTCTTAATCTGGTGCTAT 157 28 100.0 32 ............................ ACTCAGAGACCGCTTCACGGTGCCATTCGATA 97 28 100.0 32 ............................ ATGCTCGCCATCTGGATCGGTTTCCTGATCGC 37 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : CCATTGGA # Right flank : AATCCAGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 465-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000098.1 Allochromatium vinosum strain MT 86 scaffold0098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 464 37 100.0 36 ..................................... TCGGGTTACTCCTTCCGATGCCGCCGAAGCCGCCAA 391 37 100.0 36 ..................................... ATGCCCGGCGCGTGGCCGGGCAGGTGGTGTCAGTGG 318 37 100.0 37 ..................................... GGTCTAGAGCTCCTGGCCGTTCTGGTCGGTGGCGCTC 244 37 100.0 37 ..................................... TTCGGTGATGTACTGCGAGGCGTCATCTGAATCGATC 170 37 100.0 37 ..................................... ACGAAAGCCTGACGATTGATCGTTTTGGCCCCATCTT 96 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 100.0 37 GCCGCAATAGACAATCCACTACAACAGGGATTGAAAC # Left flank : ACAACAGGGATTGAAACATGTTCGCTACGGGCGGTAGGCCCGAACGTGATGCGC # Right flank : CGCCAGATCGGCGGCATCATCCAGATCGGCATATGGGTGCCGTAATAGACAATCCACTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATAGACAATCCACTACAACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 25889-19394 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSL01000017.1 Allochromatium vinosum strain MT 86 scaffold0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25888 29 100.0 32 ............................. CATTATTGGCGAGCCGTTTAATGGATTCTGGA 25827 29 100.0 32 ............................. GCATCGGCCGACGACGCACTCATCCCGCGCGC 25766 29 100.0 32 ............................. CTCTTGCGCCCGATTCCACGCCTCCCAATCGG 25705 29 100.0 32 ............................. AGGCAATCGAGAGCGAGGTCAGTGCATGAGGG 25644 29 100.0 32 ............................. TCAGCTCGACGAGCTATTCATCACGGCTGGAG 25583 29 100.0 32 ............................. TTCGCCCCTACCAATCCCGCACCATCGAAAAG 25522 29 100.0 32 ............................. GGCCCCGACCTGGCCGAGCGTTTCGGGCATCT 25461 29 100.0 32 ............................. TCAGCGCCCGGCGTGCGGTCGATCTCGTCAAC 25400 29 100.0 32 ............................. CGGAGAGGAAATATTGATCGGCGAGCATTACA 25339 29 100.0 32 ............................. CGCTCCCGTGGAAGTACCGATAGAACAGGTCG 25278 29 100.0 32 ............................. CAGGGAGAGAACGACCAAAGAGAGCAGGACGC 25217 29 100.0 32 ............................. CAGCGGCCCGACCTGGCGCCCTACCTGATCAC 25156 29 100.0 32 ............................. CATCCTCGACCCTGGAGCCGGCCCGCGCCTTG 25095 29 100.0 32 ............................. TTCTCCGGCAGATCCGTTGAGAGCGTCACCAA 25034 29 100.0 32 ............................. GAAAATTCCGGCTTATCATCGTGTCACGACGT 24973 29 100.0 32 ............................. ATAGGCAGTTTTACCTGCCCCTGGAGTACCAG 24912 29 100.0 32 ............................. TTTGGATCCAGGGTTCCCCCGCGCGCGTCATC 24851 29 100.0 32 ............................. GCCAGATCGCCGAACAGGTCGGGATGTCTCAT 24790 29 100.0 32 ............................. TCTTCGCGCTACTTCGGCCTCGCTTCCCTGGA 24729 29 96.6 32 ............................G GTGGTGGATCGGGTTTGACTCGCCCCGAATCG 24668 29 100.0 32 ............................. GTAGAGTTGATGAAGAAAGGCAAGCCGGAACG 24607 29 96.6 32 ............................T TGTCCTGTATTAGTCCGTCTGCTGGTGGCTGT 24546 29 100.0 32 ............................. TTAGAGAAATGATCGAGAGAGACATAAACGGT 24485 29 100.0 32 ............................. TCGCGGACGCGGGGAAGAGCGGTTGACGAATG 24424 29 100.0 32 ............................. CCGTATAGGTTGGCTTCTTCATCTGACTGCGT 24363 29 100.0 32 ............................. GCCTGATGTGATAGATCGTGAATGGCATAAAC 24302 29 100.0 32 ............................. CGGCCTTAATGTGCCATCAGAGACGACATGAG 24241 29 100.0 32 ............................. CATGTGACCGGAGGCCACAGTCTTCACGCGGA 24180 29 100.0 32 ............................. CATGCCCTCACCAGCCAGACCCAAAGTCGACG 24119 29 100.0 32 ............................. GGTAATCCAATCAATCATGATTGAGTCCCGAA 24058 29 100.0 32 ............................. TGGTCAGTGCGTCGATGATGTGAAATGCCCGC 23997 29 100.0 32 ............................. TTTTGCGTCGATCCCGCGATAGTCCACCTGCG 23936 29 100.0 32 ............................. TCCGCTCTTGGTTTCAATCTGGGAATGACGCC 23875 29 100.0 32 ............................. AGCGAGCCAGACAGAAAGCCCGGCCTCGCGCC 23814 29 100.0 32 ............................. CCGGTATCAGGCGGGGTCTGCGTCAGCAGCCC 23753 29 100.0 32 ............................. CGCTCGGCACGAGCGCGCCGCTGTTCCAGCGT 23692 29 100.0 32 ............................. TGACCGGCCACGCTTGGGCGGTCTACGACTTC 23631 29 100.0 32 ............................. AAGGCTATCTCACCCCGGATGGCGAGTTTACC 23570 29 100.0 32 ............................. CCGGCCGCCTGATACTCGGCCAGGATCGCGCG 23509 29 100.0 32 ............................. AGGCCAGACTGGCCCCGACCGCTGTCGCGTCG 23448 29 100.0 32 ............................. GGCTCGAAGTGGAAGACCATGCCCCAGCAGAT 23387 29 100.0 32 ............................. TCCGCCCATTCAGCCTGGAGATCACGCAGGCC 23326 29 100.0 32 ............................. CGCCCTTGAAAGGCCGCCAAATCGGTCGCCTC 23265 29 100.0 32 ............................. CCGTTCAACCCCGTCAGTCGCCGCGCTTTCCA 23204 29 100.0 32 ............................. AGACGCCGAGCGCGAAGCACTGATGCTTGACA 23143 29 100.0 32 ............................. CTGCCCCTCGATCGGCGCGGCGATCTCCAGGC 23082 29 100.0 32 ............................. ATCAGCGGATTTTTCAGCTCGCTCGTCTCCGA 23021 29 96.6 32 ............................A TTACCGAGACAGCCAAGACCTTGCAGGTCAAC 22960 29 100.0 32 ............................. GCCTCGGGCACGATTCAGGGCCTGGGCGAGGA 22899 29 100.0 32 ............................. CCGAACGACAGCCCGGTAAGCGTGCCGTCGCG 22838 29 100.0 32 ............................. CCCTGCTGTTTCTGCCGGGCGCGCATCCGGCG 22777 29 100.0 32 ............................. CCGTCCGGCAAGTCCGGTTCCTGGACACCATC 22716 29 100.0 32 ............................. CCATCGTTCGACCCCTTGGATGTTGATCCAGA 22655 29 100.0 32 ............................. CCCTGCGGGAACAGATCCGGGCGCAGCTCCCA 22594 29 100.0 32 ............................. AGCGACAGATCCGTCAGCATCCACGCCTCCCG 22533 29 100.0 32 ............................. CCATGCTCGACCGTGAACGCCTCGATGTCAGA 22472 29 100.0 32 ............................. TCTTCGCTGAGGCCGCATTCACCGTCAAGGCC 22411 29 96.6 32 ............................G TGAGCTTGGGCTTGTCCATCGCCTCGGCCAGT 22350 29 100.0 32 ............................. CAAAACCCGGATCGACGCGACGCCAGCTATGG 22289 29 96.6 32 ............................G GCGTGCAGCCGGGCCGATTCGAGCAGCCAGCG 22228 29 100.0 32 ............................. CAAGTCGATCTACTCTGATCTCAACACCCACG 22167 29 100.0 32 ............................. GTGTGCGATTACATGAGGGTGAAGTGATGATC 22106 29 100.0 32 ............................. TGCCGCAGGGCGGCGTCGAACGGGTTGACGTG 22045 29 96.6 32 ............................T TGAACGCGCGACCCAGAAATCGGCAATGGCCC 21984 29 100.0 32 ............................. TCGCCACGAGACGGTCATGGCCAACATTGAGG 21923 29 100.0 32 ............................. GCGCGATCGGCGTCGGCAGCGTGGCAGCCTTG 21862 29 100.0 32 ............................. TGGTGCTCTCGGGGCGTCCGCTGATCATCGAC 21801 29 100.0 32 ............................. TCTAAGCCAGTCGCCGTCAGGCTCTTGAACGG 21740 29 100.0 32 ............................. GACCGAACACCCGGCAGTAGGTTTCCAGTGGC 21679 29 100.0 32 ............................. CGAGCTGCGATCGGAGCGAATGCGGAGACTCC 21618 29 100.0 32 ............................. TGGAATGTCAGCGGGAGTGGTCGGCACGGCAT 21557 29 100.0 32 ............................. TGTGTGACAACAACGCCCGTGACTACGCGCGG 21496 29 100.0 32 ............................. TCCGGCCAAGGCATCCAGTGTGTCGGATACTG 21435 29 100.0 32 ............................. TGCTCGGAAATGTTACGGCAGATCAAATTCAC 21374 29 100.0 32 ............................. GGATCGTCCGGCATGTCTCGCTCCTGGAGCGG 21313 29 100.0 32 ............................. TGCCGGTTGGAGTGATGGATGGCTGAGCCAGA 21252 29 100.0 32 ............................. CAGTCGAGCTTGCTGCCCTTCTGGCCGGGGAC 21191 29 100.0 32 ............................. ACCACACGCGCACCGGTACTGGCGAGCGCTGC 21130 29 100.0 32 ............................. AATTTCCAGACGCTCGCCAGGAGCGGCGAGTC 21069 29 100.0 32 ............................. TTTCGCCAGCTCGCGCCCTCGATCATCGTCGT 21008 29 100.0 32 ............................. CGCTCAGCCCACGCCACGCGCGCATCCCGGCG 20947 29 100.0 32 ............................. TCACAGGCATCAAGCACCGCGAACGACTTAGG 20886 29 100.0 32 ............................. AAAAGGACGCGATCTTCGCGTCCTGTGCTGTA 20825 29 100.0 32 ............................. CTGACGCGATAGTGTACTGATGGCCCCGGTCT 20764 29 100.0 32 ............................. CGCCTGCAGGTTGATCTTGGCGTTGCGGCGAC 20703 29 100.0 32 ............................. TGATTCGCGCGCTGCATTACCGCAATCTCATC 20642 29 100.0 32 ............................. TGCGCCGCCCGCGCGTTCCTGGCCCTGAGACG 20581 29 100.0 32 ............................. CCAATCAGACCCGTGACTAGGGTCCAGAATCG 20520 29 100.0 32 ............................. TCGAAGAACGCCTTGACCAGTCGCTTCTTGAA 20459 29 100.0 32 ............................. TGGCCATTGACCAGAACCATGGTCTGCTGCAT 20398 29 100.0 32 ............................. CCCAATGCCGATCGCCTGGAAGCCCGCCTCAA 20337 29 100.0 32 ............................. CGAGCAGGTCACATCAGCCCACCAAGCGCCTG 20276 29 100.0 32 ............................. AGCCTACTCCCGCTCGTCTCTGATCTCGGGAC 20215 29 100.0 32 ............................. GGAGCCACGCAATCGCTGTTCACCGAGTTCGG 20154 29 100.0 32 ............................. CTGATAGCCGCCATGCCAGTCACCACCATCAC 20093 29 100.0 32 ............................. TCATCGCCGAGTGTCCATTGACTTTCGGTAGG 20032 29 96.6 32 ............................G CCGGTCACGGTCGCGCTGACTGTCACCAAGTC 19971 29 93.1 32 ...........................GA AGATGGATATGCTTGCCGACCAGTCCGCGGTC 19910 29 100.0 32 ............................. TTTGCGTCCAGTCTCAGCGGTGGAGCGTTCAT 19849 29 96.6 32 ............................T TACCGGAAGACGACGAATAAGAAACCGAACCG 19788 29 100.0 32 ............................. AATGTTTTCGGCTCGGACGATCTGATCGAGTG 19727 29 100.0 32 ............................. TCAGAAATCTGAGGGAAGCGCGCGCGCAATTG 19666 29 100.0 32 ............................. CGAACCGAGGCGCCCATGATCCATATTCCACA 19605 29 100.0 32 ............................. TGCACCGGCCAGTAACACCAGTGCGCCAGCCC 19544 29 100.0 32 ............................. CTCGACGAGGTCTCAGACGCCGACCTTGCGGC 19483 29 96.6 32 ............................G CAGACTCCAGCCATGCTGATCGGAAGCGCCGT 19422 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 107 29 99.6 32 GTTTCCCCCGCATGCGCGGGGATAGGCCC # Left flank : GCCAAAAAGGCTGAAACCGACTCGCAGACGATCGATCGTCTCGTCAGACGAGAAGCGGCCACCGTGTTTCGTAAACAGGAGGTGATTCCGGCGATGATCGACCGGATCAAGCAAGTCATTCGTCTGGAGGAAACTCATGCCGCTGGTCATGATCGTGACTCGTGACGTTGCTGACCGCTATCGGGGATTTCTGGGTTCGCTGATGCTGGAGGTGGCACCAACGGTCTACATTTCGCCGCGCATGAGTGCAGGGGTGCGCACTCGAACTTGGGGCGTGCTTGCCGATTGGCATAAGGCAGAGCCACAGGGAAGCATTGTGATGGTTTGGCGTGATGTGAACGCGACAGGCGGCATCGGGATTGCCACACTCGGAACACCACCAAGAGAGCTGATTGATGTCGATGGCCTGTGGCTGGTGCGAAAGCCGTTGTAAACAAGGTCTTTGAAAATTTGATCGATTTGCTTGTTTTCTCTTGCAGTGCATGGGCTTAACTGCAAGA # Right flank : TGCGGCTCGCGGCTGTCAATACGAGCGTGGGCGACGTACGGACGGTTGACCAGCTGAAGGCAGCGTAACAAGGGGCGTGGTCGGCCATGTGTGCTAGGTTCTAGTAGAGGCGCGACAGCAGGAAATTTTCGGAGTGCCTGCGGCGGGGGCGTCGCTTGACGCCGGCCCGGTATGAGGGGACGTCCGGCCCTCCGCACCTCATTTCAACTTACCTCGAACGAGACTGTCCCCCCCACCACTGATTCCCCCCGCAAACGCGGGAATTAGGCCCAACTGCGCAATCGTTTCAGGCGTTTGTCAGAGGCAAGTCGTTGAACTGCAACCGATGCAGCCGCGCGTAATAGCCACCGAGCGCCAGCAGTTCCGGATGACGCCCCTGCTCGACGATCCGCCCGTCCTGCAACACCAGGATGCGGTCGGCGCTCTCGATGGTCGAGAGCCGATGCGCGATGACCAGCGTGGTGCGCTTGGCCATCAGCGTCTCCAGCGCCGCCTGGATA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCATGCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //