Array 1 50019-50962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHJR010000011.1 Escherichia coli strain 40973 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50019 29 100.0 32 ............................. CAAAAACATGCCTCTAATCGCCTCATATCGCC 50080 29 100.0 32 ............................. TGAATTCGCGGTCGTCGGTAGTTATTGTCACA 50141 29 100.0 32 ............................. TTTATATCCCCGATACGCACGACGCGGACCGG 50202 29 100.0 32 ............................. CCCCGCCCTCCTGCACCACGATCGCGCCCTCA 50263 29 100.0 32 ............................. CCTTACGCCTGCAACCTCGTGCCACAGTTCAT 50324 29 100.0 32 ............................. GTTTTCAGTCCAGCGGCAGCTACGAGGAATCG 50385 29 100.0 32 ............................. GATGGTTGAGGGTTATATGATGCCAGTTTACG 50446 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 50507 29 100.0 32 ............................. ACGCTGATTATTCCGTACCAGTATTGTGAGGC 50568 29 100.0 32 ............................. GATGACTCTGTGGCCTGGGTGGTTACCTGTCT 50629 29 100.0 32 ............................. CCCTGCCCGTTTTGCGGGAGTTCCAATGTTGA 50690 29 100.0 32 ............................. CATTATTTTTAGACGGTTGCGGGATTGGATTA 50751 29 100.0 32 ............................. CGGCCTGGTCGATATCTCGCTGCTAGCGTCAA 50812 29 100.0 32 ............................. TAAGATGATCTCACGGAATTGAACGAACTACG 50873 29 100.0 32 ............................. GACACAGAGCGCTGCTATAGCGCCTATGCCAA 50934 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCTCATCCTGGACTAATCATTATCATTCTCTACAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATCTAAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTACGATTCGCATAGTCTTTTATTCTAAGGACATCGATTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATAATTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76615-77132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHJR010000011.1 Escherichia coli strain 40973 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76615 29 100.0 32 ............................. GCGGATTATAAATATATCGTCTCAACTGGCGT 76676 29 100.0 32 ............................. ATGCAGTCGACGCGCAGAAACCTGACGGGGCG 76737 29 100.0 32 ............................. GATTGTGTTTCGGGCCTTTTAATTCCCGTTCA 76798 29 100.0 33 ............................. CGTATTCTTTAAGGTTTTTCGCCTGTCCTTCGA 76860 29 100.0 32 ............................. CCAGGATCTTCACACAGTGGCGCGAGCTGGAG 76921 29 100.0 32 ............................. ATCATCTACGCGGTCAAAACGGCACCGGAAAA 76982 29 100.0 32 ............................. GATGACTCTGTGGCCTGGGTGGTTACCTGTCT 77043 29 100.0 32 ............................. AAGCCGGATCACATTTTCTTAGCGGAGCTGAC 77104 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCCCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : GCTCTCGGTTCTGGGGTACTGTTACCCATAACTGAGCTCCCCCGCGTCAGCGGGGGAACTCCCAACTCCCATTTTCAAACGCCTCATGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //