Array 1 24389-26029 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEY01000063.1 Pseudomonas aeruginosa strain Pae_CF67.06a CF67.06a_contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================== ================== 24389 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 24449 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 24509 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 24569 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 24629 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 24689 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 24749 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 24809 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 24869 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 24929 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 24989 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 25049 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 25110 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 25170 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 25230 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 25290 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 25350 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 25410 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 25470 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 25530 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 25586 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 25646 28 64.3 88 ..................NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGCAGCTAAGAAAAGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 25762 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 25822 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 25882 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 25942 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 26002 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ======================================================================================== ================== 27 28 97.6 34 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36253-34904 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEY01000063.1 Pseudomonas aeruginosa strain Pae_CF67.06a CF67.06a_contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36252 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 36192 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 36132 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 36072 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 36012 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 35952 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 35892 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 35832 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 35772 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 35712 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 35652 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 35592 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 35532 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 35472 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 35412 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 35352 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 35292 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 35232 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 35172 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 35112 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 35052 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 34992 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 34931 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 120855-120226 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEY01000002.1 Pseudomonas aeruginosa strain Pae_CF67.06a CF67.06a_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 120854 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 120794 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 120734 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 120674 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 120613 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 120553 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 120493 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 120433 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 120373 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 120313 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 120253 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //