Array 1 388807-391251 **** Predicted by CRISPRDetect 2.4 *** >NC_015931.1 Pyrolobus fumarii 1A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================= ================== 388807 25 100.0 43 ......................... CACGCCAGAACTGCTGATCAAGCTGAAGGTGAAGGGAATCCAC 388875 25 100.0 47 ......................... AACGACGTTGACTGGGGCGACGCTAGGGTCATAGTGGTGGACTCGCC 388947 25 100.0 45 ......................... TGCTAGGCTTATGCCCATCGCCCTTTCTGCCTCGTGTATCTTGGT 389017 25 100.0 44 ......................... TTCTTGCCATGGGCGAGCGAGTAGAGGTACCTAGCCGCCAGGAG 389086 25 100.0 44 ......................... CATTGACGTATCTAGGTTCCCACCCACAGACGTGCCCCTCTGAT 389155 25 100.0 39 ......................... AACCTAACACGGCTACTCACAAGCCACCACGGGCCATCG 389219 25 100.0 43 ......................... CACGTCCTCGGGCTTCTGGAGCCGCTTCCTGAGCTTGAATACT 389287 25 100.0 45 ......................... GACCTGGGTTTGGGCGGCCATCCCACACACACCCCGCCGGGTCCG 389357 25 100.0 42 ......................... GCACATGTTCCTGCAAACCCTTACCCCGCTAGAGTCCACCAA 389424 25 100.0 43 ......................... CACAAGATAGCCGGTATTGACATTGATGAAGAGGAGCTGACGG 389492 25 100.0 41 ......................... TAACAGCAACCGGTCAGGTCAAGTTCGTGGTGAAGCAGTAC 389558 25 100.0 43 ......................... CCGGCGGCAGACGCGGTCGTACCTGCACTTGTCTAGCTCTCTG 389626 25 100.0 52 ......................... CCTGGCTTGGATACGTCTGGTGCAGCCGTATACGCGACGCTTCCAGTGACAC 389703 25 100.0 41 ......................... TTTCTCACCACGCTGGCTTACCCCGCTCTCCATGCTTTCGT 389769 25 100.0 47 ......................... TTGAACTTCGTCGGGATGAAGTGCACGTTGATGTACGATGACGGCTT 389841 25 100.0 46 ......................... CAGCCTCATGACTAGCTTGTGCACGGCCTTGACGAGCCCGCCTAGC 389912 25 100.0 42 ......................... GGCCACCACCGTCAGCCCGAAGAGCGTCTCTATAGCGTCCAC 389979 25 100.0 43 ......................... CACCTTTGCCGGCGGCCACTCCTCGACGATCCAGAACGGCTCT 390047 25 100.0 43 ......................... GCGCTATACATCAGCTTGACGGCCACCGTTGTCTTGCCCGTGC 390115 25 100.0 45 ......................... GTTGGATTAGCTCGGTTGCTCCAGGCATACCACCCGACCCCCGAT 390185 25 100.0 45 ......................... GACATCCTCTGGCTTCGCTAGGCGTCGCTTCAGCTTGAAGACAAT 390255 25 100.0 45 ......................... CAGTAGTTCAGCTGGGCCCAGAGGACGCGGTGGTTGACCCCCACG 390325 25 100.0 44 ......................... ACACTAATAACTCGCTCAACGTCATCTGGGGTCAGGAATTTCGC 390394 25 100.0 45 ......................... CGCCGCGTCTAGCTCCGCCTGCACACGGGCCGCGATGGTGTCGAA 390464 25 100.0 41 ......................... TCGATATCCCTGAGGGCGTGCTCTACGAGCATCCTTCCGTA 390530 25 100.0 42 ......................... TGGTGGCAGCAGCTCATACACCTGGTAGCCTGCGCCGCGCAT 390597 25 100.0 44 ......................... TCGGATGTTGAGGTGGCCGTGATACTCCGTCACCTCCGCAACAA 390666 25 100.0 42 ......................... GGGGGTGTATACGTATCGGGTTAGAGGCCCTCGGGGGCGCTA 390733 25 100.0 57 ......................... TGACCACCCATCGGTAACACGCACTATTGCTTGTCATACAACGCTCCTCGTTGCTAG 390815 25 100.0 45 ......................... GGCATCAAGTGCCAGGATTAGTGGCTCTTCGCCCGGAATGTCAAT 390885 25 100.0 45 ......................... CGCCTTGAACGTGACGATCCGCATAGATCCGCACCGGTGTTACCC 390955 25 100.0 43 ......................... CCATCCATGCAGACGGTGGTGGAATGCCGGACATAGACGATGT 391023 25 100.0 42 ......................... GTTCTCGCCGCCGTAGTACATGCGTATCGTCACCGTCCCGTT 391090 25 100.0 37 ......................... CGAGACCCTCAGCGACGCGCTCTCTAACGCTGTTTAC 391152 25 100.0 50 ......................... TATGCCCCTGTGGACGATGTCCCCGAGGAAGAGCCAGGGCTCCTGCATGC 391227 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================================= ================== 36 25 100.0 44 GAAACAACCAAGAATGAATTGAAAG # Left flank : GCCAAGATACAATCACACGAGTAGTCATCAAAACACCAAGACGACAGGAGTACAGGGACAAGCACAGGTGAGAGAACAACACACCCGCAGCCAACCACACAAAAGAAGAGAGGACAAAGACGAGCAACACTACCCATCAAGTGTAACACCTGGCATCTCTCCTCACGGAACAACCTCCTAACAGCCTCGAACACCGCAAGACACGCGACAGAGGCAAAAACCCGACACACATAAAGCTTTTAAACAGACTATAGTGACGTTTTTAACCCCCGGTACTACCGGCGGACCGTTGCCTATGGGACTATGACTGGTTGAGAGTAGCGCAAGACCGTTGTAAACTCATACTTAAGCTTTTCTCTGCTTATAAGCCTGGTAGTACCCGCGGACTGTCCTGCAAGGGCACCGTTGAAGCCCATTACACCTCCCCAGCCACGCCAACAAAGGCAAGACAGGCAGAGATAAATACGGGGAAGAGCCTATAACCACACGACAAGCGTGCA # Right flank : GTCAATAACATACACGACGCCTCTCATGCATGGCGGCGTAACGCTCATGATCATCACCGCTGGGTCCGTTGTGTTGTCGATTTCGTACTACAACCTGGCAGGACGCTTGGCCAGATCTATGCCGCCGTATCCCTACGGCGAAACCGGACTACTACATGGACGGCTGTAAATGCTACAATATCGGTGGTGCGGCTTCCTAAGCGGCACCGAGCTATACTTGAACTGCATAATCTCGCTGAAGGAGGTCTCACGAGCAGCGAACCCGGGATACGCACGATGCTCGAGGGCGGAGAAAGTACCTTCTTCAAGTGCCTGGAGGGAAACGAGGCAGGGATGATACTCGCGCTACCATCGTGAACCGGTGCGAGGCTCCCGTCTGGTGTAGATGGACGGGCGTTAGTATCTCTCCACACTACCAGGAGCAAGGATGAACTCCGGTTTGCGCCCGAGCCACTCACCTATCCTCTCCAGGTTCCTGGTAATCTCCCTCTCGGGGCGGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACAACCAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 430418-425697 **** Predicted by CRISPRDetect 2.4 *** >NC_015931.1 Pyrolobus fumarii 1A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 430417 25 100.0 43 ......................... TAACTGGCATTCCACCATCATACACCACCAGCATAACCTTCAG 430349 25 100.0 44 ......................... TTGATCGGAGCTACGCTACTGAGCGAGGATATGCCAGCGGCCGT 430280 25 100.0 41 ......................... TCGAAACCGCGCCTCGGCATCTCCAGCGAGATTCCGGACTT 430214 25 100.0 49 ......................... CTGGAGGCCTACAGGCGGATATTCCCGCGGACGTATCGAGCATTTGCGC 430140 25 100.0 45 ......................... GGCCTATGACTGGTCGCATCACCTACCTCCACCCCATACATGTAT 430070 25 100.0 44 ......................... GACTTGATTCTCGGTGATTGTCTAGAGGATGAAGAGAAGCCAAA 430001 25 100.0 43 ......................... TCGAGCTTCTCTAGCACCTGGCGGGCAGTGGCCAGGAACTGCG 429933 25 100.0 39 ......................... CACGGTTATGCGACGCGCCTTCACGAACCACCACTCGCG 429869 25 100.0 40 ......................... AGAACATGCAACACTGGGTACTATTGGGGTTGTAACATCC 429804 25 100.0 43 ......................... CAAGTGGTTTGGCGTATCGCGGAAGAACGATACAGCGTTGATG 429736 25 100.0 44 ......................... CCTGGAGAGGATCGCGGCGGTAAAGAGACGCGATTTGAGATCAT 429667 25 100.0 40 ......................... TGGCTCTACACCCCTTGCACTCGCAGAAGACCTCCAGGCG 429602 25 100.0 44 ......................... TGAAAAAGCGGCATATACTGCCTTGCGGCTGGTGGTGCAAATAC 429533 25 100.0 45 ......................... GGAGTTCTACAATGCTAGTGATGGGTCGCTGGTCGGGTGGGTGAG 429463 25 100.0 50 ......................... GAATGTGACCCTATCGGGGCTCGATATTTCCGGTTCGAGATATTTCTGGG 429388 25 100.0 41 ......................... CACCCGTTTTCACAACCTTGCGCTTTCATTTCTAGTTTAAC 429322 25 100.0 41 ......................... CGTCATAGGCTCGCACCTTATCACTATCCTCTCGAAGCGAG 429256 25 100.0 39 ......................... ATGAGGCGGACGCGGCGGGAACGACCATAACGTCGCGCG 429192 25 100.0 44 ......................... CAAGCCTCGCTGGGCTTCTGCTCCCGCTCCTCCCTGGCCTCAGT 429123 25 100.0 43 ......................... TCGAGATACCAGTGGACCCGGACGCTGGGGACTATTACCGCGA 429055 25 100.0 45 ......................... TATGAACATCTAGGAGGTGACAACCGTGGCTAGGTACCCCGTCAC 428985 25 100.0 43 ......................... TCGTTCATGGCTCGTGTCCTCCCCCGTGCTAGCTGTTCAGCCT 428917 25 100.0 45 ......................... GTCATTGACGATACTAGAGCGTCGTTCGTGGCGCTGAGAATCAAG 428847 25 100.0 43 ......................... TTGGTTTGTAGCCGCCTCTGCCTTCGACTTTTGCCACACACGG 428779 25 100.0 47 ......................... CAATGCCATGATACACGCGTGGTAGCAGTTCTCGCGACACAGCCCAT 428707 25 100.0 46 ......................... TAGCCCTGTTCCTAGACCAGTCGGATGGCTTGCTCACCTCCACTGT 428636 25 100.0 40 ......................... GAGGTATATTCGTCCATCACTGCGCACGTTTGTCGCGATA 428571 25 100.0 39 ......................... CTTCACCCGCGACCACCTCCGCGTGGGCCTACCGCGTAA 428507 25 100.0 45 ......................... GCAGATCGTGATGTGCGAGGTCGCGCAAGTTGAAAAAACGCGTGT 428437 25 100.0 46 ......................... GCGGCCTCCATCCCACGCACCCCCACGCGTAAACCCGCGAAGGACG 428366 25 100.0 43 ......................... CCGCTTCTTGCCAGCACTGCCCTTGGCCATCTGCCAGAGCCTC 428298 25 100.0 42 ......................... CACACAGAGCCAGCGGTTGGCATGTTCGACCCTAAGCTACGT 428231 25 100.0 45 ......................... CCTGGCAAGATACCGGACTTCGGGCGTGGACACGACCCAAGCCTG 428161 25 100.0 42 ......................... CCACCATTTCCGGATCCCCGCACCGCGTATAGAGGGTATGCG 428094 25 100.0 42 ......................... GACATTCCTCATGCTCACTGCATGCCATGCGATAAGGTCGAG 428027 25 100.0 40 ......................... TATGAAGACGGCTGGTGGAGAAGCGGCAGCCGCCGCATGG 427962 25 100.0 41 ......................... GGGAGAAGAAAGAGTGGCTCCTAAAGTGGCTGGAGAACGTG 427896 25 100.0 41 ......................... TACCCTTACCAGCTTCCTGGCGTCGAGTAGAGAGGCCCTGT 427830 25 100.0 44 ......................... GACATCGTCGGCTTCACACTCGCATATCGTGCCGCCGCTCTCGT 427761 25 100.0 42 ......................... CACCCATCTCATCGTCATGCCACTGAAACGCGGCGTTACATA 427694 25 100.0 42 ......................... TTCTAGGCGATACCGCCGCTCTAGGAACGGAAGCCGAGCCGA 427627 25 100.0 43 ......................... TTGGTAGAGGCGGACATCTTTGCCGCCGCGGCGGCCATCCTGG 427559 25 100.0 44 ......................... CACGAGTACGCGATATAGGTTCTTGGGCCAAGGCGCGAGGCATA 427490 25 100.0 43 ......................... CGTTAGCCACGACAACACCGTGTAGTGGAAGAACTGTCCGCCC 427422 25 100.0 39 ......................... GTTAACTACGCGCTGGAGAACGCACCGGAGGACCTGAGC 427358 25 100.0 45 ......................... ACAGCGCTCATGCTACCACCGTACCTCATCGAGGGTAGCGACGAG 427288 25 100.0 37 ......................... CACGACCCACATGTCAACCTCGCGCTCCTCGCCCTTA 427226 25 100.0 45 ......................... CCTGGCCATCTCGGCGTCTATACCAACCGCCCATGCTATGAACCC 427156 25 100.0 41 ......................... TTCGTCAGACAAGTCCTCTTCGAGCCATTTAGCAATCTTTT 427090 25 100.0 39 ......................... AACACCACGATAACCCCAGTGATCGACCTGCAGGGCCAG 427026 25 100.0 52 ......................... ACGTAGCCCGTCGCCATTGCTCCTAGTATGAGCCAGGGTGTTAGCAGGCCTA 426949 25 100.0 40 ......................... GTAGCCGCCGCTGGCATAGACGGGCTTTGGCGGCTGCCCA 426884 25 100.0 45 ......................... CACGGTTACCGTGACTCCCTCCGGGTGCCAGTCGGGCGCCTCGTA 426814 25 100.0 45 ......................... TCAGTGGATAGAGCTATTCCGCAAGTGGGCAAAAGAGGGCATAAG 426744 25 100.0 44 ......................... TTGGTGGCGTTAGCAATTGCACCAAGCAGAATACCGATACCAAA 426675 25 100.0 42 ......................... GAAGTAGTGCAATCCGCGGGTGACTAGCACGAGCATGCGCAC 426608 25 100.0 44 ......................... GCGCAGTATGTTCGGATTTTGTTTGATAGCGTACAGCAGGGCGG 426539 25 100.0 41 ......................... GAACCGCTCCGGGTCGTCAATGCGCTCAAGCGGCACTATGT 426473 25 100.0 42 ......................... TGGCAGGGTGGTTGTCATGGTAGTGGGGTGACGTGCTGTGAG 426406 25 100.0 39 ......................... GTCGTTGTCGAAGCTTGTTGGCTGGTAGTCGTCGTAGTG 426342 25 100.0 38 ......................... ACCCGGTGCCGGGCCAGGAGGAGTCTCTGCTGCGGCTC 426279 25 100.0 44 ......................... GCTGTGCCTCGGTGTCTCCGCCCGCCCCTCCCCAGCCCGCACGG 426210 25 100.0 45 ......................... ATACTCTTGGGATGGGGCGGAAGGTCAACGAGTGCGGCGTAGCGG 426140 25 100.0 44 ......................... CTAGACACGATAATGAGCACGGAGCCACTCCGCCAGGTATACGA 426071 25 100.0 42 ......................... GTGGAGCGTCTTCACATCGTCCATCGTCGCCACTGGCTGTAG 426004 25 100.0 43 ......................... GCCATGCAGATAGGTATGGCACTACAACGTGCTGCATTTGCCG 425936 25 100.0 47 ......................... ATGCTAGCCGCCAGAGCAGGCACAAGTAGCACTAGCGCCGCGAGGAC 425864 25 100.0 46 ......................... TTGGTTAGTATGAAAGTAAGGCATTTGGCGTAGGTCTAAGGGTGGA 425793 25 88.0 46 ..G.....C.G.............. AAAGCGGTAGTATCTCGCCTTGGAGGACAAAATATGGAGCTTTGAA 425722 25 88.0 0 ........C.....C.G........ | G [425699] ========== ====== ====== ====== ========================= ==================================================== ================== 70 25 99.7 43 GAAACAACAAAGAATGAATTGAAAG # Left flank : CCCCACGGTCTCATGGCAAGAACCCTCTCCTAGAGGCACAATGGGCGCCCAGAGAGCAGCACAGAGAAGCTACAACACAAGCGACAAGCACAACACGAGACAGTAAAACAACAAACTCACTACACAACCCGGACATAGGCGCACACTGAGACATCACCTACAACTCGCAACCACAACAGCTACACACAACAAAACACGGAAACACAATCAGCAACTCCCACATCCTAGACACAACCCTTTTCTACCCTCTAGCGTAACCCTTTAAACTCCCGGTACTACCCGCGGACCATTACCCATGGTACTATCAGCGGTCGGGACATACTCCAAACTGTTGCAATCCAGTATTTAGACTTTACCCTGCTTATAACCCCGGTACTACCGCTGGACCGTGCCCCACAGGCAGCCATGGCGCACACTATCTCTCGAAATGCACATAAACAGAGACAAGACAGACAAGAATAAATACTGGGAAGGGCCTATAGCTACATGGCAAGAATGCA # Right flank : GGGTGTGGAGCCCCTGGGTGGATGTGACTGTTCGTATGGGGTTGGGGTTGTCTCTGTGCCTGTTCGGGGCTTCACTTGGTGTCTAGGGGTTGGAGGGGTGCGCGTCTCCTGTACTTCTCGAGGCTTTGGGGTCCGATCACGTGTATCTCGAGGGGGTGGTTGGGTGGTAGGCCTAGCTTCTCCCAGATGTATTCTATCACCTGTGCCGCTTCTCGCGGAGAGGGTTCATGGTCGAGCGCTACGAGTATATCCACGTCGCTTGCTGCGGTCCATTCTCCCCTAGCCACGCTGCCGGTTAGGTAGACGCGGGCGTCGGGGTAGGCCTCCCTGACGACCCTGGCTACTGCCTCCGCGAGCCGCTTCCAGTTTCTAAGCATGCGTCTCCTCTCGAGCATCGTCTCGAGGAGTACCTCTGAGTAGCTTCTCGACAAGGGCTGTCACCCTCTCCACGGTGGATAGTATGTCCTCGGCGTCCTCCCTCGTGTAGACGCGTAGAGTGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACAACAAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 3 437565-438823 **** Predicted by CRISPRDetect 2.4 *** >NC_015931.1 Pyrolobus fumarii 1A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 437565 25 100.0 43 ......................... CTTCAGCGCGTAGTAGTGGCGCTCGAGACTCCTTGGCGAGTAG 437633 25 100.0 38 ......................... TTCATCACGGTCGGTATGAGTGGGAGCGGCGGGTTTGG 437696 25 100.0 46 ......................... TCCAGGTGCTCGATGGCCCATAGTGGCGCCTCTACAAGCGCGAATG 437767 25 100.0 47 ......................... AAGGATGCGTTCGAGAACTGATATCGCGTTGTCAATTTCCCTCCGGG 437839 25 100.0 43 ......................... GAGAGGAAGGCTGCCCCGGACCTCGTCCGCTCTATCGTCGATG 437907 25 100.0 42 ......................... GCTATCATCGCCTCCAGTTTGGCAATGATTTGGTCAGCCTGT 437974 25 100.0 46 ......................... AAGCTTCTTGTACGTCTCAACGTCGGCCTCAACGCGTATTACTTTC 438045 25 100.0 46 ......................... GCGACGTACGCGATGTGTGGCGACTCGTTGAACTGTGTGTTCTGCC 438116 25 100.0 41 ......................... TACAAACTCGTAGTTCTCTCCGCCACGGTTTATAACGATGA 438182 25 100.0 44 ......................... TGCCTCGAACCTCGCGGCGGCCCTGTTATGGTTCGTGGCGGTGT 438251 25 100.0 44 ......................... AACTATGCTCTGTAGTAGCCTGGGAAGCTCCGCGCTCATCCCGC 438320 25 100.0 46 ......................... TAGTACACGCAATACGGCATTGCACACCCACCACGCGTACACTCTA 438391 25 100.0 46 ......................... TAGTGTGGCACGACAGTGGCTATGACTTAGTGCCGGGCTATAGCCA 438462 25 100.0 41 ......................... GTGACACTATACAACATCACGGACGTCGTGAAGAGGAGCGT 438528 25 100.0 44 ......................... TTAACCCGGCCGCGCGCCGCGACGATCTCGAGATCGCGCCGGCG 438597 25 100.0 42 ......................... GTGATAAAGTACGGCGCGCAATACGGCACCGGGTTCTGGATT 438664 25 100.0 44 ......................... TGATCTCCTGTGGGTTCGGTTTCTCCACCCTGATCTCGACATCA 438733 25 100.0 41 ......................... GTAGCTGAGACCATAGCGTAGCCGGTAGAGTTGTGCCACGG 438799 25 92.0 0 .......................GA | ========== ====== ====== ====== ========================= =============================================== ================== 19 25 99.6 44 GAAACAACCAAGAATGAATTGAAAG # Left flank : CAGAACCTCACCATATCCAGCCATATCCGCAGCACCCTCCCGCGTAACAAGCCGCCCCTTACACAGCCTCAACCCTGCCAGGCCAACCACACGGAACAACAGGAGGGTAACAGACAGCCTCTTGGCCACACCCCTCTGCGACAGGGGAAGGGACACCAACAAACCTCTCCAAAACATATAACCAATAAATTTCCCACAGACTCATCACAAGCTTAAAAACAAATACACTAGCAATCCTTATCTACCCTCTACAACAATATTTTTAACCCCTGGTACTACCGGTGGACCGTCGCTCACGGTCCCATGGGTGGATGTGAGGTACTCCCGACCGCTGTAATCCGGTATTTAACCCTTGCCCGGCTTATAAACTCGGTACTACCCGCGGACCATACCCCACGGCCATCTGTGCCCGGCACGACTACACTCAAATCACAGAAACAAAGACAACAGAGAAAAGAATAAATAGAAGAGAGACCCTATAACCACACGGCAAGAATGCA # Right flank : ATGTTTAGGGTGGCTGGCTTGGTTGGTCTGGTTGCGTCCGCGTGTTTTGCCGGGTGGGTTTCTGCGTTGCGGTCATCCTCTGTAGGGTGTGCACATTCTTGGTACGGGGCTTTCTTGGGGGTCGCCGTCGTAGGTTATTCTCCCGTCTTGGAGTATGATTACGCGTTGGAAGTCTAGCCCTGGGTCTATATGCGAGGCTATTATCGTTAGCGTGTATCTCTCCTCTGCCTGCTCGGTTATGAACTCGCGTATCGCCCATATGGAGTCGTAGTCTATGCCGTTGAACGGCTCGTCTATGAGGGCGACGCGGGGTCGCCGCGCGTAGGCGAGTGCTAGTTTCACTCTCTTCCTGTACCCGGTGGAGAGTGTGGCGTACCTCTCGGCTAGTACCTTCCGGAGCCCCAGGCCCTCGATTACGTCGCTACAGTCGTTGAGGCACGTCATGTCGAGTAGTTGTTCGACTGTGGCGTCTGGCGGCTCTACACTGTCGAGTAGGAAGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACAACCAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 466550-461092 **** Predicted by CRISPRDetect 2.4 *** >NC_015931.1 Pyrolobus fumarii 1A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================== ================== 466549 25 100.0 44 ......................... CCCATAACTCACGGCAGCCACCCACTCGCGGCCCTTCCTAGCGA 466480 25 100.0 54 ......................... TCCAGACCAACCAGCGTACACCGCCTACGGCAGGAGAAGCTGGGACGTGACGCT 466401 25 100.0 42 ......................... TACCTTGATTATCGCGAGGCCGGACTCGACACGGATCGTTTT 466334 25 100.0 41 ......................... CACCCCGATCGGAAACGTTATCCTCCCCTCCTCTATCCGCA 466268 25 100.0 44 ......................... AGTGGCGTTAGCAACCACCGCGTCATGATCTGCATTACGACGTC 466199 25 100.0 41 ......................... TACTAATTCTCTCAGTTTCATGCCCTCACCCCGCATTACAA 466133 25 100.0 48 ......................... TTACATTTACTAAAGGCAGGCCCGTCAATATCTTGATTGTTTTGTATT 466060 25 100.0 42 ......................... ATACATTCTTAGCTTATCAAGTAGACCAACACTTTTCAGTAC 465993 25 100.0 44 ......................... TAGCACGTTTATTATCACCATAAATCACCGACTAGCATATCACT 465924 25 100.0 48 ......................... TCTGGACGCACCCGCAACGGTCGTAGACCACCGACTTGAACACCGAGC 465851 25 100.0 42 ......................... ATACAACAAGCCCGCGAGATATACGAGATTCTAGTGAGGCTG 465784 25 100.0 39 ......................... CATGCCGACCCTGTGTTCCGCGGGTGGATCGAGAGCTAC 465720 25 100.0 45 ......................... GGTCGCTACCTTGCGCATCTCGGGAGAGGGGTAGACCCATGCGGG 465650 25 100.0 46 ......................... CGACTCCCGCGTGGACGCCGGCGCAGAGAGCTACAAGACCAACGCG 465579 25 100.0 41 ......................... GTACGCGTTGGCGTCCGCGAAGCGCTGAAGTACGCTGTTAA 465513 25 100.0 43 ......................... TCTCGCTACACACCGGCCTATCGTCACTAACACACTGCCTCGT 465445 25 100.0 40 ......................... CGCTTGCCTCCACACCCTCAACGCCAAGTGCGGCGGCCAG 465380 25 100.0 40 ......................... ACATCGTAGATGTAGATCCGTGCACCGGGCTCCAGACCGC 465315 25 100.0 42 ......................... TATGACACTATGACACGATGGGAATTTGCAGGGTCGTGTAGT 465248 25 100.0 38 ......................... CATTATTTGCACCACTAGTATCCGTCGTAAGACTTCTG 465185 25 100.0 42 ......................... CATTCTCGCGTATCGCGGTTATGAGCCTTGGCTCCTCCATGT 465118 25 100.0 45 ......................... TTATACCCCCGCGCATACCCTCTATACGCGGTGCGGGGATCCGGA 465048 25 100.0 41 ......................... CAATCACGAATAGCGTCAGGCCAACGGTGGCGGCGGTTCCA 464982 25 100.0 48 ......................... GCGTTTTTGCTACTATGCGGGCTATCTCTGTGAAGTCTCTCACCTCGT 464909 25 100.0 58 ......................... TACGAAGAGCTGCACGCGCACGCCCGGGGCTAGGAGCTGGTTGGTGACCAGGACACGG 464826 25 100.0 39 ......................... CTCGTACCAGATGTCGCCGTCCTCGCCATCCACCATAGA 464762 25 100.0 41 ......................... TCGAGGCTATCCTGTCCTCGAAGGTCTCAACCGCGCCCATG 464696 25 100.0 41 ......................... GGGGTGAGAGCCGTGCCCCTCAACGTGAGCGTAGAGCTAGA 464630 25 100.0 39 ......................... TAGGCTCGCGAGCTCAACCTGCTCGGCGCTCCTGCCGTA 464566 25 100.0 49 ......................... GACCGACGTGGAATATGTCAGTATGCGTTGCCACTATCACTATGCCACG 464492 25 100.0 41 ......................... CGAATTATGATTTGGGTTCGGAGCAGATGCTAGAACAATCC 464426 25 100.0 48 ......................... GCGGGGCCTGGTGGGGCCGTCGGCCCCGCCACTGCCGGACGCCAAGGT 464353 25 100.0 45 ......................... TCCGTTCCTCTCCACGTTGTCAAACCTCACCGCCTCGGGCCTGGC 464283 25 100.0 44 ......................... CCCTATAGTCTATCATCTCGGCGAGGTAGTCCAGAGCCTCGATG 464214 25 100.0 52 ......................... CTCGTCACGTTGAACGTTATCTCGAAGGTCGTGTTGCCAGACGACCCCCTAT 464137 25 100.0 45 ......................... TGGGACCGCCTCGCGGGCGGCGGCCCTGAGACCGCCATCTTCTCC 464067 25 100.0 40 ......................... GGAGGAAGCTGAGGCCGATTGCGAGAGGGGCCACGGCCAG 464002 25 100.0 42 ......................... GAGCAGCTCGGGGTGCTCACCGCGGCGCGTATACTACGCGAC 463935 25 100.0 38 ......................... CTACCCTCCTGGGCCAGCCTCCTCACCTCCTCGAGCGA 463872 25 100.0 44 ......................... CTACCCGAAGCGCGGGGGCGGGAGAGATGGATCTCGCGCGCGGA 463803 25 100.0 48 ......................... TCGATAGCCTCTCGCTGGGTGCGCGGCGTAGCCGTCTGCTCGTCGGTA 463730 25 100.0 46 ......................... TTTTTGATAACCCTCGCGCCACTCCTGGCGCTAATCCTACTGCCCT 463659 25 100.0 44 ......................... AGTGGAGGCTGCCGTCATCACCGCTCAGCCGGGTGGGAGAATCA 463590 25 100.0 47 ......................... CACTAGTCTCGAAGAACGCCCCGTTGCCCTTCACCGTCTCTATCCTA 463518 25 100.0 42 ......................... GGATACCAGATATCTCGGCGGCAACCTCGTCGGGCTTCGCCT 463451 25 100.0 41 ......................... AAGTGGATGGGGTACGCCGTTGACCAAGTAGTGGAGCTATT 463385 25 100.0 46 ......................... GTATATGGCGAAGCATACAAGCATGGCTACAGCTAGGCCGGGTTGC 463314 25 100.0 46 ......................... CCATACTCGGGTAGGTAGATACGGTGCCCGCCTATGCTATTCGTAG 463243 25 100.0 44 ......................... GCTATTTCTACATAATCACCGTTTCCGAGGCACGGCGCTGGTTT 463174 25 100.0 43 ......................... GTTCGCTGCACACACGGTGATGCGGTTGTGACCACGTACCCCG 463106 25 100.0 40 ......................... TATGCTCAACGACGCTCACGCGGTTGAAGAAGTCCATGAT 463041 25 100.0 45 ......................... CTGACCTGACACGTTGAACGCGTACTCTCCCGGGTTACACTGCGT 462971 25 100.0 40 ......................... GCACTTCACGAACACTTCGTAGTATAGCGGCATGCTACTG 462906 25 100.0 44 ......................... CTGGGCAAGGCGGCCAGCAGGGGGGCGCTGCTGAAGGTCTACGC 462837 25 100.0 41 ......................... CTCGCGTCAACCCTCCGCTCCTCCAGCAGCCTCTCCAACGC 462771 25 100.0 42 ......................... TGCGCCAGGTGGTCGAAGTGCACGTCAACCTCGTTGCCATCG 462704 25 100.0 41 ......................... TCGCCCTTGAAGACGCGCGCGCCAAGCTCCTTCGGGCTCGG 462638 25 100.0 43 ......................... CCCAGCGGCTCGTCAACCATGCAGCGTACCCGCAACCCCCTAC 462570 25 100.0 45 ......................... GAGGCAATGGCGATGGGCACGCCAGCGGTACACCTCGCCTACGAG 462500 25 100.0 40 ......................... TATCATCCCAGCCTCAGCCTTCGAACCCTTCAACTCCTAG 462435 25 100.0 44 ......................... TGGCTACTTCACCTAACTCCTTCTCGAGGATCCTGGCAATTGGA 462366 25 100.0 48 ......................... CACTGTGAGCTTGCTAGTGCCTCTAACGCTCTCATAGAGGCTCTCGAG 462293 25 100.0 41 ......................... GTAAGCTACGAGCCGTTCTGTGCAATAAAGGCTGCAGCAGC 462227 25 100.0 53 ......................... ACCCATGGTGACTCGCTAGTGGCGTAAACGTGTACTCCCCTGGCAGTCGGGTA 462149 25 100.0 43 ......................... GTCCAGCACCGGTATAGACTCCACCACGGCTTCCAGCAGCGCC 462081 25 100.0 44 ......................... GATGTCCGGGGCTAGGCTGGCTGCGGCCACCAGCACGTTGGTAG 462012 25 100.0 38 ......................... TTCCACTTGCCCTGCCACATTCCCGTCAAGAGGGTTTC 461949 25 100.0 47 ......................... AAAAGATAAAGTGACGATAGAGGTACGTCTGTGCGAGACGTATCCGT 461877 25 100.0 42 ......................... CGTGGAATAAATCGCTCAGAGGCGATTCGTAGAGCTATCGAG 461810 25 100.0 51 ......................... TCGCGTTATATTATATTATAGCCGCGCGCGTCTATATATCGCGCGTTTTGT 461734 25 100.0 39 ......................... CCGGTCGTGACGTTCAGGTAGGGGGTGGCGTAGAGCGGT 461670 25 100.0 44 ......................... AACTAGCATCGGGTTGGTGTGTTGGCCGTGGCTCGCTACAAGGG 461601 25 100.0 42 ......................... GAGCACATGCTGAGGGAGGGGTGTCCCCGGGCGCGGACACAG 461534 25 100.0 40 ......................... CCAACGGTAACGACACCCGGCGTATCGACAATCGCGGGGA 461469 25 100.0 43 ......................... CTTACGGTTTTGGTGTTGGCTGAGGCATTGGTGGCAAGTTTGG 461401 25 100.0 43 ......................... TACACACTATCACTAGCCAGGCTATCGTTCGGCTACCACACCC 461333 25 100.0 51 ......................... GGTGACATAGACCGTCTCCTCGTCACGGTCACGGCCTAGGAGCAGGCGCTG 461257 25 100.0 46 ......................... ATACACACGCCCTTCTTGCCGGTTGTGACACACACGTCATGCTCTC 461186 25 100.0 45 ......................... GTCAATGCCTGACTCTGGCGGCACCTCTTCACCACGTAGTATTGC 461116 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================================== ================== 80 25 100.0 44 GAAACAACCAAGAATGAATTGAAAG # Left flank : CACCCTCGAGTGACCCTCAACACCCTCAAGCATACGAGGCGTCACCGGAGGAGACACACCCAGGTTAACAGAGAGCCACGCAGCAACCGGACACCACACAAACTCCTTCACAACACCACCACCAAACCTACCAAAACAACCAACAACACCACAACACACACCCAACAAACCACCAAAACAACACAACCCACACAAGCCAAGAGCCGAAAAGCATAAACCACATCTCTACGAAAAACTTTTTCTACCACTCAGCGTAATCCTTTTAACCCCTGGTACTACCGGTGGACCGTCGCTCACGGTTCCATGGGTGGATGTGAGGTACTCCCGACCGCTGTAATCCGGTATTTAACCCTTGCCCGGCTTATAAACTCGGTACTACCCGCGGACCATACCCCACGGCCATCTGTGCCCGGCACGACTACACTCAAATCACAGAAACAAAGACAACAGAGAAAAGAATAAATAGAAGAGAGACCCTATAACCACACGGCAAGAATGCA # Right flank : GCATGCGGTTGCAGAGTAACCCTCGAAGACCTGGATTAAGGCCTACAAGGAGGTGATTGTGCTCATCCGGGAGGTTGTGAAGAAGCTGGAGGAGGTGGCCTCGAGGGTGGAGGGGGAGGTGGCTACCCAGTCACGGCAGACGGTCTACGCTGTGCACCTGGAGCCTGCGTAGGCCGGGACGTGGCCGGGGTACGCGCCGTGCACGTGGCTATCCCGCTGGCTACGCCGGAGAGCGCCCAGAACCACTTCGCCGCCCTGGACAGGTACCCGGGTTCTGGTCTGTCGGGCGTGGCTATGAGCGGCTCCTCTAGGACCACGTAGACCCTCGTGACCCTCGCCACCCTAGACCCGTTGTAAGCGAGGACGGCGGAGTGTCTCGGGTCGACCGGCCACTCCACGACCCAGAGTATCCGCTTCTCGGCCCACTGGAGCCTCCCATTGTACCAGGGTGGGGTCACCAGGAGGGCGTCCGTGCCCAGGGACTACGCGGCTCTGTGGCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACAACCAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 5 473827-475977 **** Predicted by CRISPRDetect 2.4 *** >NC_015931.1 Pyrolobus fumarii 1A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 473827 25 100.0 44 ......................... GCGGAGGTAGAACCAGGCGCGTAGGAGGCGCCTGTAAAAACTCT 473896 25 100.0 44 ......................... CATTGACGTATCTAGGTTCCCACCCACAGACGTGCCCCTCTGAT 473965 25 100.0 45 ......................... GCAGCATGGGCACCAACTCTGGGACTCGCTAAGGTGGAAGTTCTT 474035 25 100.0 41 ......................... GTGGCGGTTCACCGCCGCATAAAGAAGGACAAAGCGAAGGC 474101 25 100.0 44 ......................... GAGCGTCACGACCTCGCCGGCGTTCCTGGTCTCCGGGAGATGCA 474170 25 100.0 46 ......................... TCAACCAGCTCATCAATCACCTTGAACTTCTCCTCAAGCCTCCTAC 474241 25 100.0 43 ......................... GACACTAATGACATTAGCGGGTTTGATTGACAGGTTGACACGG 474309 25 100.0 44 ......................... AGACGGTGACCCGTGTGAGTGTAGAACTGATTACAGGCTCGTCT 474378 25 100.0 44 ......................... CGGGATGATACAGGGCAGGAGGAGCAGCGGCCTGGGCTGCAGGG 474447 25 100.0 44 ......................... CCCCCACTGGGCCCGGTTCGGGCGGTTACCGCCTCATAGACGGA 474516 25 100.0 49 ......................... TTTCGTTGTTCTTTTCCACGCTCATCCAACCCACCGAGTGACTCATCAT 474590 25 100.0 50 ......................... ATTCCCGTTCCCAGGCCGGGGCTCGGGGCTAGGCTCTGGCTCGGGCTCCT 474665 25 100.0 45 ......................... ACATTCTCGAACGCGTCTATGGGCACAATGAGATTGCGGAGTTCG 474735 25 100.0 39 ......................... CGATCGCGAGGATAATCCCGTTACGTAAAGCAACGATGT 474799 25 100.0 41 ......................... GCCTACGCATGAGCTCGGGGTGGGCCACGGCCAACACCACG 474865 25 100.0 45 ......................... GATCAGCTTCAACGTGATGATCCTGGCCTTGTCCACCTGGTCGCT 474935 25 100.0 49 ......................... CTCTCGGGTATTTCTCGGCGCCGTAGTGCCCCTCGGGCTTGAAGCGCGT 475009 25 100.0 40 ......................... AACCACCTTGCCGGTTACCACACCCGCGGTTATGATCTTG 475074 25 100.0 41 ......................... TTATCGGTGCCACGCCGCGCCACCCACCTGACACTACCACC 475140 25 100.0 43 ......................... GAACTGGTGGCACGCATACTGGTACGCTCAGCAGTACGCTCGA 475208 25 100.0 42 ......................... CACAAGGGCTGGTACACTAGCGTCGAGCACTCTGGAGGCGGA 475275 25 100.0 44 ......................... CTCGATAGTATTTTTCATAGCTTTCAGATTACTCTTGAGCTCGT 475344 25 100.0 43 ......................... TATCGTCACTTTATCTTTTAGGTTTGGCGTTACAGCCCAGTAG 475412 25 100.0 47 ......................... GTGATACTCGCTGTGGGGATTAGCGTTGGGACGGCGCTCGCGGCGAA 475484 25 100.0 41 ......................... GCGTTATACCAGCGCCGATTGACGCGCTCGGGCGCTTCTAG 475550 25 100.0 43 ......................... CATAACTGAGAACCCAGCGCTCAAGGCGTTGTACGAGCGTAAC 475618 25 100.0 42 ......................... TTGAGGGGCTTGCACTCTATATCCAGGTGAACCCTAGTCGAT 475685 25 100.0 44 ......................... TAATTCTCCTGGTAACGCCGCTCGCAACCCCCAGTGTAGCTCCT 475754 25 100.0 42 ......................... TTTTAGCTAGGAGCGGCCACGCTGCAACGTATTGCGATATGA 475821 25 100.0 40 ......................... GATGACGATTGATATATGGCGGCGTGCGCGGTATGGAGAG 475886 25 100.0 42 ......................... CAGTCGCCGTCGTACGGCTGGTGGTTGATGTAGCCGCGTGGG 475953 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================== ================== 32 25 100.0 44 GAAACAACCAAGAATGAATTGAAAG # Left flank : CGGATAGCCCACCTGCTCCTACAGGAGGGCAGAACAACACCAACAAGAGCAGCACAACACCTAAACATATCAAAGACAACCGCAGAGAAACACCTCCGCTGGCTCAGGAACAAACAACTAGCAAACCAGGCACACGGCAACATCTACACACCAACACCATGGCTAAAACTACACCACGAAATACACTGGAAACAAGCCAAGAGTCGAAAAGCATAAGCCAAGCCCTCACGAAATCCTTTTTCCACCCTTCAGCGTAACGCTTCTAACCCCTGGTACTACCGGTGGACCGTTGCCTATGGGACTATGACTGGTTGAGAGTAGCACAAGACCGCTGTAAACTCATACTTAAGCTTTTCTCTGCTTATAAACCCGGTACTACCGCTGGACCGTCCCGCAAGGGCACCGTTGAAGCCCATTACACCTCCCCAACCACAGAAACAAAGACAACAGAGAAAAAGATAAATAGGAGAGAGACCTTACAACCACACGGCAAGCGTGCA # Right flank : GTAGCCTTTTTGCTGACAGTTATGTTCTTCCTGAACATTTCTACTTTTCATTTTAGGCTTTCAGAAGTTGCTTAACCGTGATGGGCCAGAGTTTCACGCTAGATTACGGTATGCGCCTGGCTCTAAAGGCTACCAGCCCATACTGTCGCCCACTTGTCGCGAGGAGCCAGGCTGCGGTCTTCCGTTTTATCTACCGGTATAGTCTTCGACGCCGGGATACCCCATGTCAAAGATGGTTTTCGTGAGGTATGTTCTCGAGAAGGTTCCAAGATGCCAGGGAAGATTGGGGTCAGGAGGAGGGGCTGGGTTGTGGCGTTCAAGCCTCGAGGCCAAGTCAGCTCCTCTGTGAACTCGGAGGAGAGAAAGAGTTGCCACGCTAGCAACGGAGTGATACGTGAAGCATCTACTATAAGGTTATAAGAAAAGGAGAGGTTTACATACACTACATGCTTTGACGACGTTGGTTCATATAGTGTCCCCCTCTCGACGGCATTCTATGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACAACCAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 6 492784-492539 **** Predicted by CRISPRDetect 2.4 *** >NC_015931.1 Pyrolobus fumarii 1A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 492783 25 100.0 45 ......................... CTAGAGGAGCACATCGAGAATATGGTGGAGAAGAGGGAGAGCAGA 492713 25 100.0 53 ......................... ATTATTCTGGCATAATTCTCAACTTCGCCCCATATCAACACCTCACCCCATAT 492635 25 100.0 47 ......................... AAGTCGAGGCCGACCATAGTCAAGGCCTACGAGACGATGAGCGCCAC 492563 25 88.0 0 .....................G.GA | ========== ====== ====== ====== ========================= ===================================================== ================== 4 25 97.0 49 GAAACAACCAAGAATGAATTGAAAG # Left flank : TAGTGCCGATTGGCAAGCGCCTCGGGCTAGAGCTCGCGGTGGAGCTTGCACGCTCATTAGGGTTGACTCAAAGTGAGCTGGAGCGGGCTAGGCGGATAGCCGAGGAGAAGCTGCGCCGCGAGTGGGAAAAACGCCGGCGCAAGAAACGCATGTAGTCCGGCTCCTGGATGAACTCCGCGAACCTGGCGTACCACTCCTCGTTTACGCGTTGAGCCACGTGCGCGGCCAGGGGGTCCGGCGACTCCACGACGGACGCCACGTACTCAACCATCCTCTCCTCTACGCGCCTGGCGGCCTCGGCGTTCCCGTCGGCTATGGCCTCGGCTACTCTCTTCCGAGCCTCGGGGTCGGCAACCGTTGCAATGAGGGTCAACAACTCTACGAGGTCGTAGCCGGTTACCACGACCCTACGCCCGCGGTAGACGCGCTCCTCCCGTACAGCGAGAAGCCCCTTGGCTATGCCCCTCGCGGCAGCAAACACCCTACTGATACTGTAGGAC # Right flank : TAGTATAAGATGTGATTGTCGCTATGATCGGGGGCCCTATGCTGCACGGCACAGACACTAATAGTCGCTAATAGTTTATAGTGGATCTAGGTGCTGAGCCCCGCCAGGTTCTACGCATCTTCAGGCGCAGCAAGAAGGAGTTCCGCGAGAACCTGAAGACTGTTGCAACGAGTCTGAGCGCCGCCGAGATCCTAGACACCACCGCTGCTCTAGCCCCCGACACCGAGTTTGACGTGCTGGATGCCCCAGAGTGGGCTGCCGAGCTCTGGGAACACCTCTTGACGGAATGGTTGAGGCAGCCTAGGGGCCCGCCGCCGCCGTCCGCGAGGGTGGCCGCCCTGCTAGCGGCTGCTAGACGTGCAGCGGAGCGGGGCATCCCGGTCTCTGTGGATGAGCTCGAGAAGAGCCTCGAAGAGGTAGAGGGGATTGGCGAAGAGGAGATCTAGGCGCAGGGGACGCTGCAAGTACTACGTGAACACGAATTTCTTCGTGGATCTTAG # Questionable array : NO Score: 8.46 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACAACCAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 7 502241-501055 **** Predicted by CRISPRDetect 2.4 *** >NC_015931.1 Pyrolobus fumarii 1A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 502240 25 100.0 43 ......................... GATGCTCATTGCATATACTATTGCAATGCTAGATCTAGCGCAT 502172 25 100.0 53 ......................... CGTTGATGATCTCGTCTAGAATCGCTGGGTCTGCGCCGAAGGCGGTGACCCAG 502094 25 100.0 46 ......................... GTAACGTTGTTGTACGGTGGCGACTCTACCGTCGCGACCTCCTCCT 502023 25 100.0 43 ......................... CTATCCCCCCGCTTTATTGTACGCTTCTTGGGGTTGTAATTGT 501955 25 100.0 53 ......................... TTGCGAATCGTAGTATACCCTTCTCGTACGCAATCCTTACAATACCAGACACG 501877 25 100.0 40 ......................... ATACCATCGGGGGTTAATGTGCCCAGACCAGTCGAGATTA 501812 25 100.0 39 ......................... AGACCTCCTGGTGTTGTATTGCCGCGCCATACCCTAGAC 501748 25 100.0 40 ......................... TTTAAGCTCGTCAAGCTTCTTCGAGTGTTCCAACACCCAT 501683 25 100.0 43 ......................... GGGTTGTACTCCCTGTCGTACTCCCTCCCCACGTCCTCCTCCA 501615 25 100.0 43 ......................... TAGCGGCGGGAGGCCGAAGGCCTCGCCCAGGGTCGGGAAGGAT 501547 25 100.0 41 ......................... GTTACACTCGCCAAAGCATTTATGATATACATCGACATCGT 501481 25 100.0 41 ......................... AAGGTACTTGGCAATTCCGCTGATGCCCTTCCCGTACTTGT 501415 25 100.0 43 ......................... CTGAATCGGTGTAAACTTATGTCGACCAATGACAATAAACTTC 501347 25 100.0 42 ......................... CAAGAGCTTCACACTCAAAGACTACATAATCGTAGGCCTCGC 501280 25 100.0 48 ......................... CACCTGCTGGGTGATAGTGGCGCGCGTGACCCGGGTGAGGTAGCGTGC 501207 25 100.0 39 ......................... CGAGGATGGTGATGGTCGTGAAGCGGCTCCTACTCCCAT 501143 25 100.0 39 ......................... GTTACACATCCTGCGCTTCTTGCAGCATGGGGGATAGTA 501079 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ===================================================== ================== 18 25 100.0 43 GAAACAACCAAGAATGAATTGAAAG # Left flank : CTCACCACTAACATCCCAAAGCCCAACATAAGAGTCCAACACATCAATGACAAGCGAAGCACCCGCAACAACACAGCCAAACAGAACAACAATCAACAACACCAGAGGAAGAACAACCCAACCACGCACAACAAGACACCCAACACAACAACCACCAGACTACCATAAGAACACGATACAACACCAACACAACAACCCAACACAACACCAACTACAAAACCACATCCCGCGAAAACCTTTTCTACCCCTCAGCGTAATCCTTTTAATCCCCGGTACTACCTGTGGACCGTCACCCACGGGACTATCGGCGGTAGCGAGACCATCCTAACCGCAGGGAACCCGCATTTAACCCTTGCCCCGTTTATAAACCCGGTACTACCCCTGGACCGTCCCGCAAGGGCACCGTTGAAGCCCATTACCCCTCCCCAGCCACGCCAACAAAGGCAAGACAGGCAGAGATAAATATGGGGAAGAGCCTATAACCACACGGCAAGAATGCA # Right flank : AACGACACGACCCTACCGGTCGTCTGTAGGAGCGACAAGCCACCGTACGTCATCCACCTCGTGGCGAGGATACCCGGCGTGGGGCCCTGCACCGTCACCGGCGCAGTACGGTACCGCGCCCACGTCGTGACGCCGCTGACGCACACGTCGGAGAACGACACCGCCCAGGCGTTCCTCGCGTACCGGTGGGCGGAGAGGAGCTTCCGGGCTATCACAGACCCGAGGCCGGGCAGCGTGGTGCACCTCGACATAGACCTCCCGGAGGTACCATACCAGGTGGGTTGGCCGGATATTGACCAGGGAGGCCAACCATCCAGCTACGTCATCGACTTCTCGTGGCTCTACGCGCCGTACGTCGGGCTGGGTGTCGACAAGACGGCTCGTATCCCCGGCGAGTGGAACACCACGATGGAGCTTATCGCGGACGGCGTTGTGGTGGCCAGGAGTTACCTGCCGCACTGTGACGCATACCCGAAGCCGGGCGTAAAGGGCCCGATGAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACAACCAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //