Array 1 142307-142931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTK010000002.1 Francisella tularensis subsp. novicida strain F1126 novicida_3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 142307 36 100.0 31 .................................... GAGAAGTCATTTAATAAGGCCACTGTTAAAA 142374 36 100.0 30 .................................... GCTACTATTCCTGTGCCTTCAGATAATTCA 142440 36 100.0 27 .................................... GTCTAGAGCCTTTTGTATTAGTAGCCG 142503 36 100.0 26 .................................... TAGCGATTTATGAAGGTCATTTTTTT 142565 36 100.0 29 .................................... AGATTAAAAGGTAATTCTATCTTGTTGAG 142630 36 100.0 29 .................................... TACCTAGTAGATACGCTTACTGATAACAA 142695 36 100.0 29 .................................... AAACTTTCATTTATGATATAAAGTTTTTT 142760 36 100.0 32 .................................... TCAAAAGGCAAGAGAGACGGAAATAAATGGAC 142828 36 100.0 29 .................................... TTGTTTGATTGCTTGCATTGAACCTTGAA 142893 35 91.7 0 ......................G.-.....T..... | A,A,TT [142922,142924,142928] ========== ====== ====== ====== ==================================== ================================ ================== 10 36 99.2 29 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGGCAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTTTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATAACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAAGATGTGATAAAATATGGTTATGCGATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACTACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TTTCTAAATTAGAATTTTCTAATATATCACTACTTGAGAATTTATAGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATCTATTGCGGTGATAAAAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGATCTACAAAAAAAAGAGAAGGTTAAGCTAATAGATATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 49111-47858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTK010000011.1 Francisella tularensis subsp. novicida strain F1126 novicida_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 49110 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [49101] 49039 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [49012] 48831 37 100.0 34 ..................................... ACAATGGCAAGCTTGATTACTTTTATAGTGTGAT 48760 37 100.0 36 ..................................... AAGGATTTAATACCTTAAAATTATCCAAATTTATAT 48687 37 100.0 36 ..................................... TGCCTAATCCTCAGCAGCAACACTTAATTCAAGAAT 48614 37 100.0 34 ..................................... TTACACATTCAGCTGGTTCTTTAGCATTATTAAC 48543 37 100.0 36 ..................................... AGTAATAGCCAATGCTTTTAAACTACTGATATATAC 48470 37 100.0 36 ..................................... GCAATGACAGAAAACAGCACAGATAATAAAAAACTA 48397 37 100.0 37 ..................................... CTATAGGGTTACCTATCTTTTGAGTGTTGGCAAATAA 48323 37 100.0 34 ..................................... GTAATGGGCAGGTTTTGTATGGTCATATAGGAGT 48252 37 100.0 34 ..................................... ACTATTTAAGATAACTCGACCAATATTTGACAAA 48181 37 100.0 36 ..................................... ATCTGGTGAAGATGTAATCGAAATTGATCCGCTTAA 48108 37 100.0 34 ..................................... CAGTCTTCGCAATGACACAACCACAAGCCGCATA 48037 37 100.0 35 ..................................... AAGAGATATCTTAACTTTTGGTTTTTGGTTTTACC 47965 37 100.0 34 ..................................... GCGAGTGATTAGCAGTTGATATATACCAATCTTG 47894 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 16 37 97.3 44 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAACTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATAAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGCAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCACCTTCAGTGGCAATTAGAGGTTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAGT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //