Array 1 55206-54688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMB01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55205 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 55144 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 55083 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 55022 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 54961 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 54900 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 54839 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54778 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 54717 29 93.1 0 A...........T................ | A [54690] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57455-55535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMB01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57454 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 57393 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 57332 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 57271 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 57210 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 57149 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 57088 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 57027 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 56966 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 56905 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 56844 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 56783 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 56722 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 56661 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 56600 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 56539 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 56478 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 56417 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 56356 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 56295 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 56234 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 56173 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 56112 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 56051 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 55990 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 55929 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 55868 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 55807 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 55746 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 55685 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 55624 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 55563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCAGCTTGCGGAAAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 75944-73962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMB01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75943 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 75882 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 75821 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 75760 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 75699 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 75638 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 75577 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 75516 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 75455 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 75394 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 75333 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 75272 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 75211 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 75150 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 75089 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 75028 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 74967 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 74906 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 74845 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 74784 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 74722 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 74661 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 74600 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 74539 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 74478 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 74416 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 74355 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 74294 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 74233 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 74172 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 74111 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 74050 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 73989 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //