Array 1 163495-162081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBG01000020.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N42242 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163494 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163433 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163372 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163311 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 163250 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163189 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163128 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163067 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163006 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162945 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162884 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162823 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162762 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162701 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162640 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162537 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162476 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162415 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162354 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162293 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162232 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162171 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162110 29 96.6 0 A............................ | A [162083] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106243-107368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBG01000004.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N42242 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106243 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 106304 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 106365 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 106426 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 106487 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 106548 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 106609 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 106670 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 106731 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 106792 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 106853 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 106914 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 106975 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 107036 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 107097 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 107158 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 107219 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 107280 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 107341 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //