Array 1 97937-99978 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWRM01000012.1 Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM N7307 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97937 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 97998 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98059 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98120 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98181 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98242 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98303 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98364 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98425 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98486 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98547 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98608 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98669 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98730 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98791 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98852 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98913 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98974 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99035 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99096 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99157 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99218 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99279 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99340 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99401 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99463 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99524 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99585 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99646 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99707 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99768 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99829 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99890 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99951 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116111-117220 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWRM01000012.1 Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM N7307 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116111 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116172 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116233 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116294 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116355 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116416 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116477 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116538 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116599 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116660 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116722 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116825 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116886 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116947 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117008 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117069 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117130 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117191 29 96.6 0 A............................ | A [117217] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //