Array 1 60805-61011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZRD010000002.1 Acinetobacter indicus strain AI38 NODE_2_length_268590_cov_194.685974, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60805 28 75.0 32 A.A.GACC.....C.............. ATTCCGCTCTGCTGGCTGGAAATACCTGTCTA 60865 28 100.0 32 ............................ ATTCGCCAAAGCAAGCAGCGCCTCTTCACCAC 60925 28 96.4 32 ............G............... ATTGTCACGAACTCCCCCAACAATAAGCGCAG 60985 27 92.9 0 ............G...........-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : GTGGACACCTATTTGTGGATTTAAAGACAGTTATAGACAGCACACCAACGCTAAAAAAGCCCCGTCGAACCTTCACTGCTGAATTTAAACATCAACTTATTCAGCAATGCCAGCAGCCAGACACATCGGTGGCTAAGGTCGCAATGCAACATCAGATCAATGCCAATCTGTTGCATAAATGGATTCGTCAGTCCAGATCAATGGTTCCATCATTAACAACCCCATCTAATCCACAGACCGACTTCCTTCCCGTCATTCTTTACCCGACGCCAGTCAAACAAGAAGCACCTCCGCCACCTGTGCCAGAGAGGAAAGCTACCGCTCATATCAGGATTCCATTACATGATGAACAATGTTCCGTAAGGGATCAGATGATCGAAATCGAATGGCCGGTGGAGTCTGCAACTGAATTACTGCTTTTACTTCAGGGCTTGATCAAATGATCCGTATCGATGAAATCTGGTTGTCTACCCAGCCCATGGACATGCGTGCGGGTATGG # Right flank : AACACCCAAAATAAAACCGGAGCATTGCCCCGGTTTTATTCTTCATCTATTTATTCTTCTAATAGACTTCTTAACATCCAGGCAGTTTTTTCATGTACTTCCAGCCGTTGGGTTAGTACATCCGCAGTTGGCTGGTCATTGGCTTCTTCCACCACATCAAAAATACTGCGTGCGGTCCGTGCAACTGTTTCATGGGCACGAACCAATAACTCCACCATTTCATTGGCTTTTGGCACACCTTCGACTTCTTCAATCGATGCCAGTTTTACAAATTCTTTATAGGTTCCCGGTGCCGGAAAACCTAGTGCCCGAATCCGCTCGGCAATAACATCCAGCGCATTCCATTGCTCGGTATATTGCGTCATAAACATGGTGTGCAGACTGTTAAACTGCGGCCCGGTCACGTTCCAGTGGAAATTATGAGTCATTAAATACAGGGTATAACTGTCGGCCAGAAGTCGGGAAAGTCCTTCGACAATTTTGGCCCGGTTATCTTCAGA # Questionable array : NO Score: 3.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-F [Matched known repeat from this family], // Array 1 3634-3842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZRD010000026.1 Acinetobacter indicus strain AI38 NODE_26_length_26738_cov_192.683995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 3634 29 100.0 31 ............................. TCAAACGGCATTTATCAAATGCCAAGATACG 3694 29 100.0 31 ............................. CTAAGAGAATAAAATTCCTTCATGGAAATCT 3754 29 96.6 31 .............C............... TGACTGGAGTAATCCAAGATTTCCATGTATC 3814 29 93.1 0 .............C..............A | ========== ====== ====== ====== ============================= =============================== ================== 4 29 97.4 31 GTGAGTAATCGCATAGGCGATTTTTAGGT # Left flank : GTGAAATAGACTTTTCCGACATTCCTGAACTTGATGAAAGCTTTTGGAAAAATGCTGTCCAAAATCCGTTTTATAAGCCAACTAAACAAGTGACTACAGTACGCATTGATGCAGATGTCATGCAATGGCTAAAAGCACAAGGCAAAGGCTATCAGACACGTATGAATAAGATTTTACGTGATGCAATGCTGAATGATTTAAAAAATCACCCATAAAAAACGGAGCTTAAGCTCCGTTTTTTACAAACTATTTTTAAGCTTATAGAATCTAAATTCGGGGTAAATTAAACGGCTTTGTTGCACAAAGATTTCATAACTATATGATTTTAAAGGTTTTGATTATTTTTTAATCCAAAATTAAATTTATTTAAATCAGATGCTTACATATTTATGCAACAAAGCCGAATATAATTAATTTTATTTCCATAAATAGTTTTTTGTTCTTTTTACAAAAATGTTATAAGATCATGATTAACTAAGATATATACTCTTAATATTGTT # Right flank : AGGATGTTGGCTATTTAAACTATACCTCTACTTTTAACTTCGGTTATTTATGGGAGGATTACCTAGAATGGAAGTTAATCCCCCATTCTTTAATTCAATTTTCTCTGAATAACAACTCGATTTCGTCCCATTGAGGTAATGTATGCTTTTTAGGTACGACTTCGAACTGTAAGTCGACACAACTCAGTACTTTTTCAAACAAGTCAAAAGAGCCTGTGAAGTGACCATTTTCAATCTCAGAAATTGTTGTTTTATTGACTCCAGATTTCTCTGATACATTCTTTTGTGTATAACCTAGATTTTTCCTAGCCAATTTTATTTTTTCTCCGATTTCTTTTCTAGTAGCCATAATTTCTGATTTTTCCCTATATTTAATGTTAGCTATATAGCGAAATAGAGTATAAATTATACAAAGTTCGCCATATAGCTAACATCAGATTTTACCTTTATCCATTTTCTGAATCTGATTTAAATGAAGTTCAAGATACTTTAATTCTAAT # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGTAATCGCATAGGCGATTTTTAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //