Array 1 17285-17028 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUAY01000017.1 Leptotrichia hofstadii DSM 21651 G402DRAFT_scaffold00003.3_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 17284 35 97.1 39 ....C.............................. ATTTAGATTTAGAGTCATTCGTGGTTAAACAGCTCTTGT 17210 35 100.0 39 ................................... CATTTAAAGATTGTTATAAAAAAGTATCGGGGGGATTGT 17136 35 100.0 39 ................................... CATGTATGCTTCTATAATAAGTAATAGAGATGAAACAGT 17062 35 94.3 0 .......................T....C...... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 97.9 39 TTCAATCCTTGTTTTAATGGATACTCTATTTTAAC # Left flank : AAATTTCCACAGCAAAAAAAATTCTTGCAATAAAATAAATAATAATTGCAACAATAATCCCCAGTTTTATTTCTGAATATTTGGGATTTAAGACCTTAAACCTGTTATAATAATTTTTTACTATTTTCACAAAACTTCCTTTCCAAAATCGCAGGCCTTTCTTCCAATTCCTGCTACATTTCTCTTTTACTCCTCTTCAATCCCCGCTTCCACATCCTTTTTCCAAAACACCATACCATTTTTACAATATTACTGTAATTTATTTCTCTTTTTCGCTTATCTTCTTAAGAGCCTCTTTTACATCAACTAACAAATATTTCTTTTGTTCTATTGTTTCTTTTCCCCTAAATCTATCACCTAATTTATTCTTAGTTAATTATACCAAATTTCATAAAAAATAACAAAATATTTTAAAAATTTTATGGAATAAAGTATTTAACTCATTTTATTTATAAATAAAAAAACAACCTTATACAAAAGTTGTTGTTTTTAACAAATAG # Right flank : CCGTACTTTTGAGAGAACCCTTTATTTATCGGTATTACAGAAATTTTTTCAGACATTAAAATCGCATTTTTTTGCTTAATTTTTGTTATTTTTTGATGTTTTTTTAGCATTTTCCGTAACTCCTAGCCTGCATTTTTAGTGGCTTTAAATAGATTTTTCTCTAGTTTTATTATTTTTGGTAGTGGCAGGAATTTTTACCACCAATTTATTTTACCACATTTTTTTGATTTTTCAAAATTTTTTTTAAAAAAGGAGTACCAAAACTGATACTCCAGCTAACCTTTTTTATTGCATTTTTGTTTTTACTATTTTTTGAACATTCCAGTAACTTTATCTGCTAATCCCTTAGCTCCTTCTACTGTTTTGTCTACTGCTTCTTCAGCGCCTTTTTTCACATCTTGTACAATTTTATTATTTGCAGCTTTATCTGCTAAATCTTTTGCACCTTCCACAGTTTTACCTAGAACATCTTCTGTTCCTTTTTTAATATTCTGAGCAAC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCTTGTTTTAATGGATACTCTATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 420338-420083 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386824.1 Leptotrichia hofstadii DSM 21651 G402DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 420337 36 100.0 37 .................................... CATTTAGTGTTTTTATTATAGTGTATTTTTATTTTAG 420264 36 100.0 39 .................................... GGTCTTGATAATCTTTTTTATTGTTTGAATTATAAATTA 420189 36 100.0 35 .................................... ACTTTTCAAATTTTTCTACAATATATTTTACATCT 420118 36 86.1 0 TC.............................AAC.. | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 96.5 37 ATATAAAAAAGGATAGAACTCCGAAAGGAGACGGAA # Left flank : TTTATAATTCAATATTAATAAGGTGATAAGGTGATGATGATATGGATGAATGGGATTTTTTAGATGAAGATTTTTGTAATGAATTTTTTGAAGATACCTTTACAGTTGTTGTAATTTATGATATTATAGACAACAAGAGAAGAGAATTTCTTAAAAAACTTTTAAATTCTTTTGGAAATAGAATTCAAAGGTCAGCTTTTGAATGTTTATTGACTAGAGAAAAATGTGAAATTCTTTTAAAAAAAATAGAAAAGTTTGCAGAAGAAGGTGATTTAATAAGAATATACAGACTTAACCAAAATGTAAAAAAAGTAATCTACGGCGAATTAACAGAAATTGAAAACGAAGATTATTATTTTATATAGAAATTGCCACGATACTGTAAAAATGGGAATTAGAACATAATTTTTATTCTTTTTGTAAAAAAACTGAAAATTTAAATAATTCTCACGAAAATAGCCAAATAACATATCATAAAATAAGGGGTTAATTGTAAGAGG # Right flank : ATAAAATTTTAAAATATAAAATGTCTTTTATAGGCATTTTTTTGTTTATATTTATTCCTTATCGTAAAACGAAAATTTATTGTCTTTTCTGAAATAACATTGTATAATGTATTTAAATAAATTATTAAAAATAACAAATGAACAAACAATAAAATAGAAAGGATTTTTTTACTTATGATAGCAGTGATTGATTATGGGGTAGGAAACCTTTTTTCCTTACTTTCTTCTTTAAACTATGTCGGACTGGATACGAAGCTGACTAATAATATTGAAGAGATAAAAAATGCTAAGGGGATAATATTGCCAGGAGTTGGGGCTTTTAGAGATGCTATTGGGAATTTGGAAAAATATAGGCTAAAAGAGATTTTGATAAATGAAGCAAAGAACGGAAAGCCGTTTTTGGGAATTTGTCTTGGTATGCAGATGCTTTTTGAAAAAAGTTATGAATATGGTGAATATGAAGGACTTGGGCTTATAAATGGAACTGTTGAGGAAATAAA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATAAAAAAGGATAGAACTCCGAAAGGAGACGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //