Array 1 429599-431682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUH010000003.1 Listeria monocytogenes strain SCPM-O-B-8689 3length=436879, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 429599 36 100.0 30 .................................... AGCGAAGAATCTTACATGGACTCCAAGGAC 429665 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 429731 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 429797 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 429863 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 429929 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 429996 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 430062 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 430128 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 430194 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 430260 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 430326 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 430392 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 430458 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 430524 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 430590 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 430656 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 430722 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 430788 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 430854 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 430920 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 430986 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 431053 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 431119 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 431185 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 431251 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 431317 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 431383 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 431449 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 431515 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 431581 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 431647 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 324001-323260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUH010000002.1 Listeria monocytogenes strain SCPM-O-B-8689 2length=605241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 324000 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 323935 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 323870 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 323806 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 323740 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 323676 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 323613 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 323549 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 323484 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 323420 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 323354 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [323330] 323288 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //