Array 1 3367-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALLU01000007.1 Streptococcus suis NCTC 10446 Contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3366 32 100.0 34 ................................ TTTTTCAACGCTCTCACTTGAGCAACCTAGCAAC 3300 32 100.0 32 ................................ TTAAATCACAAACTCCGCCCTAATAACGTTAC 3236 32 100.0 33 ................................ TGAAAACTTGCTGTCTAGGTCTTGTTTTGTAAA 3171 32 100.0 32 ................................ GTCTGTTGCCATCTTAACTGCATTGACAAGGA 3107 32 100.0 34 ................................ ATCTGCTTTATCTGTCATAACCCCACGAACTCTA 3041 32 100.0 33 ................................ CTTGAAGCGAATATCTGTCATGCCCCAAAAACC 2976 32 100.0 33 ................................ ATCAATTAGCTCTCTCACCTGTTTACCTGTGAT 2911 32 100.0 33 ................................ AAATTGGGTAAGTGCAAATAAATTGACTTATGA 2846 32 100.0 36 ................................ ATCAGGCTGTATAGTTCCTCTAATTCATGCAACACT 2778 32 100.0 34 ................................ GTCAAACTTACGACCAGCAAGCAAGTAGAAAATA 2712 32 100.0 34 ................................ TGCACTAGTTTGAACCGAATCGTAAATCGTTAGA 2646 32 100.0 34 ................................ AAAATTAGATGTAGCAGAAGCAAAACGAAGTTTT 2580 32 100.0 35 ................................ AATATTGAGAGCTTGAAGCACACCGTCCAAGGCTT 2513 32 100.0 34 ................................ GTGTCTGCGTAACAATGTAGTTACTAAGTAACAG 2447 32 100.0 35 ................................ AAGCGACTGTTGGTGACTTGGATAAACCCTGAAAT 2380 32 100.0 33 ................................ ACTATTTCGCTAAATTTCATGTGTTCGTCATTG 2315 32 100.0 34 ................................ AATGGGTGATTTGCTTTATAGCGATTCAAACACC 2249 32 100.0 33 ................................ TTGGTATGGGTGAGTATAGCAGGGAACGATTGC 2184 32 100.0 35 ................................ TAAGTTTTCAGTAGGTGCATAAACCCTTGGCTTAA 2117 32 100.0 33 ................................ AACCATATCAGCAAGGTACATGATGGACTCTGT 2052 32 100.0 34 ................................ TTATTACCTCTACTTCGCAGAAGAGATCTGCTAG 1986 32 100.0 34 ................................ AAGCTTTAACTGCTAGGGAACTGAAGAAGTACCG 1920 32 100.0 33 ................................ TAAATCTTCTCTTGTTAACGTTGTGTTGAATAA 1855 32 100.0 37 ................................ ATCAAACGCCGTGACAACGAGGTCAAGCGAGGACAAA 1786 32 100.0 33 ................................ ATGTTGTTTAGAATCATGACCCTCTTTGCCTGC 1721 32 100.0 33 ................................ AAATTTATCCAATGGCAAGGTAAGTAAGCCTGT 1656 32 100.0 33 ................................ GCTTTGTTTTGGTGAATACCAACGAACGCTCTA 1591 32 100.0 35 ................................ ACATCATCATCACCTGTCAGCAATCCCACTTTACC 1524 32 100.0 35 ................................ CCCTAAAAGCTATGATTCTACCAATCCATCAGGTT 1457 32 100.0 33 ................................ TAGCAAGAATCCGAAAAGGTCACTATAACCGAG 1392 32 100.0 35 ................................ AGGTGCTTTAGTTGCAGAAAGTGGAGATACATTTG 1325 32 100.0 35 ................................ AAATAGCTATACTTTGTGGTTTGCTAGTTTAAAAC 1258 32 100.0 33 ................................ ATATACACAAAATTCAACCTATGATTTGTTATC 1193 32 100.0 34 ................................ TATCAATAATCTTCTAACAGATTTAAACATTTCA 1127 32 100.0 33 ................................ TTTAGATGAATTAAAAAATGAAAATAATTTACT 1062 32 100.0 35 ................................ ATATACTGTTAAAATTAACAGTTATTCATCAGCTT 995 32 100.0 35 ................................ AAAAAAGATGGGAACAAGTTTAGAAGCTATTTTCC 928 32 100.0 34 ................................ AAAATGATAGTGAAATGTTTGATATATCCGCAAA 862 32 100.0 34 ................................ GGTCTGGATAGGTAAACGTTTTGAAAACGGTATT 796 32 100.0 33 ................................ ATAAGACAAAGCCTTGATAACAGTCGAACCAAT 731 32 100.0 36 ................................ TTGCTGGTCGTATCAACCATAGCAACGTTCCATATC 663 32 100.0 35 ................................ AAGTATATGTCAGCGCTACGAGATACAAGCATAGA 596 32 100.0 35 ................................ TAATTGTATTTACTATCCTTTTATCAAAAGATTAT 529 32 100.0 34 ................................ TTTCAGTGCTTCAATCTCTGCTGTTACGCGACCA 463 32 100.0 34 ................................ AAGTCCGAACCGACCTTGATAATGTGACGGCTTT 397 32 100.0 34 ................................ CTATTACTCCCGATGATTGTTCGCGAGTAATTCC 331 32 100.0 36 ................................ ATCAGCCAGTGTCTTACCCTTCAAACGGATTTTAGC 263 32 100.0 34 ................................ TTGGCTAAATCCAACCTTTTCGAGCATATCGATA 197 32 100.0 33 ................................ TACTTCATTATCTAAATACCGTTTGTTGCTGGT 132 32 100.0 35 ................................ ATAGTTGCCTTTACTATTATTTTGACAATTCTATT 65 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 51 32 100.0 34 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : CAAAAGCTATTCGAGGCGAGTTGGATAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGTAGCTGGACGAAAGCGATTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTACATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT # Right flank : TTATAAGTTAGCTAGTTCAACTACTGCTCCTCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21241-20761 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALLU01000006.1 Streptococcus suis NCTC 10446 Contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 21240 32 100.0 34 ................................ CCTGAGGATTTGGGAAATATGTACACGGAGGATG 21174 32 100.0 33 ................................ AATCAGGTATAGCGTGTCCTTTTGGCTACGGCT 21109 32 100.0 34 ................................ TAATTCGTTTATTGTAAAATTTCTTATCAGTAAA 21043 32 100.0 34 ................................ TCTAACCTATGGCAATCCATCACAGAAGGCGCCA 20977 32 100.0 34 ................................ AAAATCATCGATTGACAGAGAACACTGGTCAAGC 20911 32 96.9 23 ......................A......... AACGTACCTGCTCGGACGGACCG Deletion [20857] 20856 32 81.2 32 .......T..T....A....AC..G....... TGGACGGCACTATGGGAACACCTGGCACATCG 20792 32 68.8 0 ....T..T..TTG..TA.A...A.G....... | ========== ====== ====== ====== ================================ ================================== ================== 8 32 93.4 32 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : GGATTGAAATAAGAGTTTGAGCCTAAAATTACGTTATTTAA # Right flank : TGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGTCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTAACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGAT # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //