Array 1 2917-1067 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKA01000012.1 Enterococcus plantarum strain LMG 26214 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 2916 34 97.1 34 .................................G AAACTAGGATTGTTGATGTCTCCCGCAAGTTCTC 2848 34 97.1 33 .................................C GCATGCATTTGTATAAACTGAAAATCGTTTGAA 2781 34 97.1 32 .................................G CAAGATATACCGATTGATAGTGCTGTCGGTTG 2715 34 100.0 33 .................................. TATACATGTTAACGCGCTTTGTTTTTGGATAGT 2648 34 100.0 34 .................................. ATAGAAGATAGAGAATTGATAGAAGATAGTGAAT 2580 34 97.1 35 .................................T ACTTAAAATAGCATATGATCAAACACTGCAGCGCG 2511 34 100.0 34 .................................. AAAATCCAGTAAATTCTTTATCCATAAATACTCC 2443 34 97.1 32 .................................T GTCAAAAGTCTCCCATTCATGATTAAATAGCA 2377 34 97.1 34 .................................C TCGCTTAAAGTGACACAACGCCTAATTTTGCCTT 2309 34 97.1 32 .................................T TACAAACTATGACAGATAGTCTCACTAAAGAT 2243 34 100.0 34 .................................. ACGGGCAGTGGATAGGAGCTGTAGAACCTAAATC 2175 34 97.1 33 .................................C AGTTGATTCTGCTAGAAAAAGTAAGTCCGACCC 2108 34 100.0 32 .................................. CGGACGTATCTCCCATACTGATTTTTTTAATG 2042 34 100.0 32 .................................. TTCCATTCTTTTGATCCCTCAATATATTCCCA 1976 34 97.1 33 .................................C CTTTGTCTATTTCTGTCTCACTTGGATAAATAG 1909 34 100.0 32 .................................. TCGGACAATATGCGGAAGAATATGTAATCATG 1843 34 97.1 32 .................................T ATTAATTTTATTGTATAAGTGTTTATATTTAC 1777 34 100.0 34 .................................. CTGCTCAGCACGCTCCCAATCATCATAGATATAC 1709 34 97.1 32 .................................T GTCTGTGACTTATTTAAAGCGATTTGCGCCTT 1643 34 100.0 32 .................................. AACCAATTTTAGCGATTGGTATTATCGGTAAT 1577 34 97.1 34 .................................G TCACTTGAATAGTAAACACTGTTGTTTTGTCCTT 1509 34 100.0 35 .................................. TAAATTGGGAACTCGTCCACAACCACCTTGCGGGC 1440 34 100.0 32 .................................. AGCTATTCAGCCGTTGGATTCAGTGGTTGCGT 1374 34 100.0 34 .................................. TAATGAAAGAAAGAGCGGTATTGTACGTTTTGAG 1306 34 100.0 34 .................................. TAATGAAAGAAAGAGCGGTATTGTACGTTTTGAG 1238 34 100.0 34 .................................. TAATGAAAGAAAGAGCGGTATTGTACGTTTTGAG 1170 34 97.1 36 .................................C GTATGAGTAAGGTGTTGCTTTGTCCGAGTACATAAC 1100 34 97.1 0 .................................T | ========== ====== ====== ====== ================================== ==================================== ================== 28 34 98.5 33 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : TTTAGATGGTTATCCACCGTTCTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCGACAAGCTCGAAGAATGGAACTCGCCGTTTGAGAAAGGTAGCAAAAAAATGCCAAGATTATGGACAGCGTGTTCAGAATTCTGTTTTTGAGTGTGTTGTTGATGCGACGGAGTTAACTAAGTTGAAGAAAGAACTAGTTGATTTAATTGATGAAGAATTAGATAGTTTACGTATTTACCGCTTGGGAAATAATTATCAAAATAAAGTAGAGCATATTGGTGCAAAAGAAAGCTTTGATGTAGAAGCTCCTTTGATATTTTAAGTAAAATTGGTGCGAACCCCAAGTGCACATGAAATCACTGGGGGATCCGCACCATAATTTCGTCATTTTTGATCAATAAAAAGCTTTTTTCTCATGTGAATTTAATTTTCAAAGAATTTTTTTGTAAGAAAGTAAAAATATGTCATATATTTTTGCTGTTTTCACG # Right flank : CTAGGGGTTTTTCGTGGGTTAATGTCGCTGTAGGTCTAGCTCTGTATAGAGCTAGACACTACCTAAGATTCCAAAATAACAATTACTGATTCATATTGCTCGTCTTATTTAAAAAAATTCTATACAATATAAATGGAGACAAGTAAAACGGTAGTGGAGGGAAATGAATGAATAACGTGATGGAACAATTAAGGAAATATGCATTATTACGAGGAATTGTTTATATGATTTTTGGATTGTTGATTGTGATCAATCCTAGGAGTGTGTTCCAAGTCGCTGTTTACTTTATATCAGCTTATATTGCAATCAGCGGTGTATTAAATCTTTACGATGGTGTTAAAGTCAAAAAAGCAACCGGTACCTATGGAATGAGTTTTCTAGGTGGAATCGTCTTATTAGTGATTGCAGGAATCGTGCTTGTTTTTGCGAAGGGAATCGTAAGTATTTTACCGATTTTCCTAGGTCTTATGATCGTGATTATTGGCGTGACTCGTGCGATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27679-30004 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKA01000015.1 Enterococcus plantarum strain LMG 26214 22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 27679 33 100.0 35 ................................. GAACGTCCCGTTATTTTCTATTGTTAAGTTACCAT 27747 33 100.0 37 ................................. AAAAAATACCGATGAAATTTTGAAAGAGTATAATATC 27817 33 100.0 33 ................................. TTCTACATCCTCATAACGCCATTCAGCGATAAA 27883 33 100.0 35 ................................. ATCATGTGGCAGCCGCCGTGTTTCAAAGCATACTT 27951 33 100.0 36 ................................. ATTCAGGATCTCATCTTGCTTTTCGTCACCTGTTGT 28020 33 100.0 35 ................................. GTTTCCTCATCCTCGGTAAATTCTGTGATGTAGAG 28088 33 100.0 35 ................................. GGCGTACGTAACCATTGGACCCAACGGCTGAAAAG 28156 33 100.0 34 ................................. AAAATGACTTTGACAATCAAAATCGTAGCTTTCC 28223 33 100.0 35 ................................. GTTTAATATTTGATCGGGTGTTTTTTGGTGCATAT 28291 33 100.0 34 ................................. CAAGCCTGTTAATATCCCTTTAATGTAATATTCT 28358 33 100.0 34 ................................. CGTTTATAAATGATTGTAAAGTTGACGGTTTAAC 28425 33 100.0 36 ................................. ACGTTTGCAAATTTTACAACGTAAAAAATCAAGAAC 28494 33 100.0 35 ................................. TTTGTCAGATTGCCAATGAACTGTTGCAGAATTGG 28562 33 100.0 34 ................................. GATCGGCAGATCGTCGACATCTTTATAATCACTC 28629 33 100.0 35 ................................. GGCGCTAGTTTAGCGGTTGCTTTAGCTTGGTTGAT 28697 33 100.0 33 ................................. GCCAATGTCTAAACCATCAAATATATTTGGTGC 28763 33 100.0 33 ................................. CTATGTTTAGTAAACAAATTTAACAACTATTTT 28829 33 100.0 34 ................................. ATAAAATCACCTCCGTTATTTACATCTCAATACT 28896 33 100.0 35 ................................. TTGCAAATCCTCCACGGTAAATGGTCCGTCTGAAG 28964 33 100.0 33 ................................. TGTTGGTAAAAAGCCAAAACTACATTGATTGAT 29030 33 100.0 35 ................................. ACATGTGTAAATTTACAAAAATACACATGTGAATT 29098 33 100.0 33 ................................. TAGTATTTCTTGGGGAGATGCTGATGATTTTAG 29164 33 97.0 35 .......C......................... CAAAAAATGGCAGGTTTAAATCCAGATGGCTATTT 29232 33 100.0 35 ................................. CCTTTCCTGTTTTTCTTAATGGCAGGAGTCTTGTT 29300 33 100.0 33 ................................. ACCACAATTACTGTGCGGATCAGCGCTTTTCTT 29366 33 100.0 33 ................................. CTTTATTTTTGCTGGTGATCGTATCATTTTCAT 29432 33 100.0 33 ................................. CTTTATTTTTGCTGGTGATCGTATCATTTTCAT 29498 33 100.0 33 ................................. CTTTATTTTTGCTGGTGATCGTATCATTTTCAT 29564 33 100.0 33 ................................. CTTTATTTTTGCTGGTGATCGTATCATTTTCAT 29630 33 100.0 33 ................................. TCTTTCGTTACACCAATTATATATCCTATCCAT 29696 33 100.0 35 ................................. TAAAGTTATGGTTCAAATGCAATTGGCAGTCGAAA 29764 33 100.0 34 ................................. ATCTGGGGAACTCGTGGCCAAACGTTAGGAGCTG 29831 33 100.0 36 ................................. TTGGTATAACCTCATATCTGGGTACACCGGCTGCAC 29900 33 97.0 37 ............A.................... AAACGTTACTCGATCAAATGAAGTTCCGTATCAGAAG 29970 32 87.9 0 .......................-TC..A.... | ACC [29992] ========== ====== ====== ====== ================================= ===================================== ================== 35 33 99.5 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : GAACGTTTTGAATTTCTGAAAAAAACTGGTGTGAAAGAAGAAAAGCAATTATCACTTGATTTTGAGGAATCACTGTTAGTTGCGGAAGAAAATCCAGAAATTTTTGACCAATACACTCATGTAGTTTGGCAAAAACGAATATTAGGAGAAGTAACACATATTTTCAGCCATTTAAAATGGCATATTTTAGTTTTCTATGGACGAAAAACAGGAGAAACTATTACTGATGAAAATCAAGCTTGGGCAACAAAAGACGAATTTTCAAATTATGTTTTTCCAAAACCACAACAAAAAATGGTAGAACTATATAAAGAAGAATTTGGAACTACAGAATAATTTTTGGTGCGAACCCCAAGTGGACATAAAATCTCTAGGGGATCCGCACCAAAATTTTACTGGTTTTAGCTAGGAAATAGACTTTTTCTCATTTTAATTTAATGTTATACTGTGTTTAGTGATGGAATAGTGGAAATATGTCATGTATTTCAACTATTTTCACG # Right flank : TCTATTCCAATGTCAGCCTCCAAAAACTAAAATCGAAGGGTTTATTTTAAAAGATATTTCTCATTACTGTAAGAAACCAAACTACTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAGAAATTAGCAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACGAGCGAGTATTCTTTAATCGGTGTCAACGATCATACATTGGTAACAGAGTCTGACGGGCGTCGTTGGGTTACTCGTGAACCAGCTATAGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCGTATCTTTTAGATGATGAAGCATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 241521-240389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKA01000023.1 Enterococcus plantarum strain LMG 26214 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 241520 34 100.0 35 .................................. CACTTAGTATATTATTAATCGCATCTGTTAAACCT 241451 34 100.0 35 .................................. GCTACATACACGGGGTTATAAAAATTAAGACCCCC 241382 34 100.0 36 .................................. TATTATTACAAAGTACGCTGAAAACTTGCCGTCCGC 241312 34 100.0 34 .................................. ACTTATATGGTCATTTTCTACGTCCCATTTTCCC 241244 34 100.0 33 .................................. GAGATAATTTTACATTTATAAAAAATATTTTCT 241177 34 100.0 33 .................................. GATACGATCAATAATAATTTGAGTAATACAACA 241110 34 100.0 35 .................................. ATTTTTTTGCTTTAGCTTTAGGTACAAAAAAATGA 241041 34 100.0 33 .................................. AATTTGTTTCAGGGTAAAATATCCGACAGTGTC 240974 34 100.0 36 .................................. CCTAAAAGCTCTTAATTCGTCTTTTAAGGCTTTTAC 240904 34 100.0 34 .................................. CTGAAACCTTTCCACGGTTTGCTTGAAATCTTGG 240836 34 100.0 34 .................................. AATGGGACAATACACATGCTGATTTTTGGCGAGA 240768 34 100.0 36 .................................. ACACTCAAAGAGCTTGAGAATATGCTGAAACGTGTG 240698 34 100.0 35 .................................. AAAACTAGGATTGTTGATGTCTCCTGCAAGTTCTC 240629 34 100.0 35 .................................. ACACTTCTTATAACCTTTCACGTCTAAAATAATAA 240560 34 100.0 35 .................................. TAGAGTGTTGGCATGCCTAGTCTCACACGAGTATC 240491 34 100.0 35 .................................. GGTGACATACTAGGTGTAGGTAAAACAGCTGTCAG 240422 34 79.4 0 ......................AA...AA..CTA | ========== ====== ====== ====== ================================== ==================================== ================== 17 34 98.8 35 GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT # Left flank : TGGGGATGGCGGAGCAGATATTTTACCGTTATTCCGTTTGAACAAACGTCAAGGCAAGGCATTGCTGAAAGAATTAAGCGCACCGGCTGAACTCTATACGAAAATCCCAACTGCTGATTTAGAAGATGATAAACCTTTAGTAGCTGATGAAGTAGCGCTTGGTGTCACTTATGACGATATCGACAACTACCTCGAAGGAAAAGTAGTATCAGAAAAAGCAAAAGAAAAGATTGAAAGTTGGTATAAAAAAACACAACATAAACGTCATATGCCAATTTCAATTTTTGACGATTTTTGGAAGTAAACATTAGGAAAAGAATGACTAATATTTTGGTGCGAACCTCAAGTACACATAAAATCACTAAGGGACCCGCACCAAACTTTATGGGTGAAAAAGGCTATTTCTGTATTTTTCTCATCTTTTTTTAATAGTTATGTAGATTTATTTGAGAAAATCAAGAATATGGAAAAATTATGGAAGATAATCCTATTTTTTCACA # Right flank : AAATGGAGTCTTTCCTTTTTTTACATCTAAAATCAAATTAACATGCCTTCATTTTGTTAAAATGGTTAAAAAAAGTGTAAAATTAAACTAGTTATCTGAAATAGTGGATAAACTATTCTACAATTGTACTAACTAAAGGAATAAGAAGGTGATTGAAAAGATGAAAAAATTGTTTAGGAAAAAAAGAGAGATAGATAAAGTAGCGTTTTCTTCGTCTGAAGAAAACGCACCAAAAATCGATGATAGTGATATTCGGATACCAGCCGATATTAAAGGGCTGTCCAATCAAGAAGTACAACAACTTTATACTGAAGGTAAGACCAATAAAGAAGTGGAAGATCTATCTAGAACTACAAAACAAATTATTTTAGATAACTCGTTGACATTATTCAATTTTATTAACTTGTTTTTAGCAGTGGCAGTTTTTGCAGTCGGTTATCCTAAAAATGCGCTATTTTTTTGGATCATTATTATCAACACAGCAATTGGTGTTATTCAAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 69334-68014 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKA01000049.1 Enterococcus plantarum strain LMG 26214 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 69333 33 100.0 37 ................................. ACTGTAGATGCTCTACTAACATTCATCCTACTTTTAC 69263 33 100.0 34 ................................. AATCTCCAATTGATGCCTGTCAGCTACCGGGAAG 69196 33 100.0 36 ................................. AATGGAATTAACTAATGAAGACGGAGATACCTGTTT 69127 33 100.0 33 ................................. AATATGTGCGTGGGGGAAAATCGTTTCGGCGAC 69061 33 100.0 35 ................................. CTCTTGTAATTTGTCATTCATTAGAAAGATATCCA 68993 33 100.0 35 ................................. CAACTTATCATAAAAGCGAATCATAACGTCAGACT 68925 33 100.0 35 ................................. ATACGCCGTTATAGAGCGTTTAACAGATAAATCTA 68857 33 100.0 35 ................................. ATTGTACACAGCGCTAATGAACAAGAAATGATTGT 68789 33 100.0 33 ................................. ATTAAAAATAGTCTTAAACCAATAAAGAAAACC 68723 33 100.0 34 ................................. GTTTTATCATATTTAGACCGCCTTCTTTTGATGG 68656 33 100.0 36 ................................. AGGCTGAAAGTGATGCAATTGCTTTTGAGTTAGAAC 68587 33 100.0 36 ................................. AAAACAAGGACCAAGAGCTTAAACAACAAAATCAGG 68518 33 100.0 33 ................................. TCAATCATAGTGAAATGCTTATCAGTCATTTTT 68452 33 100.0 34 ................................. GGAACTAACATCCAAATAAAGGAAGTTACTTTTA 68385 33 100.0 34 ................................. TTTTAAAAACATTTCCGGATTAAATTCTTCGTTT 68318 33 100.0 35 ................................. AACTTCCGCTCTAGCTGTTCTTGCAGCTTATCTAG 68250 33 100.0 35 ................................. TGGGGGCGCTGGACATTCCAGCGAGGCTATAAGTC 68182 33 100.0 35 ................................. TGCCATAACATTACTTTTTAGCAGAAATTGAAACG 68114 33 100.0 35 ................................. GGGAAAAAATGGCTACATAGGTCATTATGTAGTCC 68046 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 20 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : GGAGGTAAGATTATAGAGATAAGTATGAATATTTGCAGAATAGTGCAAGAATTTGAATGGTATTTTCCAACTGATGGCAAGCATTGGTAATATTTGACTGGAATAGTAAAAAATTGCATAAAATAAAAGGAAAGAAACGGATTTATTGATGGTCGGTGACTATTGGAATGGTGAGCTTGGAAAATGGATGCATTACATCGATAGCTTGGGGACATTGATTTCATTATTTTATGATTCTTTGAATAGACAATTATAGAGAAAAGAAGATAATTTTTTGAAATTAACCGTGACTTCTGTTACTAGAATACTTATAATTAGAGAGAGAGTTTATATATAGTTCAAGTGCGAATAATAAGTGCACATGAAATCGCTAGGGGATCCGCACCAATTTCTTGGTAATAATGGAATGGAAAAGCGATTATTTCTCATTGAATTCACATTTTTTACTATGATTATGGTTGGAAAGTGACAGATATGTATATATTTCGTCCCTTTTCACG # Right flank : AACAATTGGCAACACCAAAACTTCGCTTTTTTGAGTCTCACTCTTTATCGAGTGAGATTTTTTCTTCAATCATCTATTTACCAATCGTTAAAACAGAACGATTTATCTTTCCCGTTTATCAAAAGATACTCGTCAAATCAAAAAGAAATATTGTTCTACAAAATTCCATCATTATTAAAGAATTTTCTTCCTATTTTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCGAGACAAAAAGAAGCCGTTCTACATACAGAAGGGCCTTTATTGGTTATGGCGGGAGCAGGCAGCGGAAAGACGAGAGTTCTAACACACCGTATTGCCTATTTAATTGAAGAAAAAGATGTGAATCCATGGAATATTTTAGCAATCACATTTACTAATAAAGCCGCAAAAGAAATGAGAGAACGGGTTGGGAAATTATTAGAAGTCGGTGGAAACGATGTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //