Array 1 985209-982007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFA010000002.1 Bifidobacterium pseudocatenulatum strain YIT12054 YIT12054_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 985208 29 96.6 32 ..............T.............. CGGGGGTTGCCATGATCGCCATTTCACCGCCC 985147 29 96.6 32 ..............T.............. TGGAAAACGGGCGTATCAGGCACAGACAACCA 985086 29 96.6 32 ..............T.............. CAATCAAGAGATGGAGGACAAAATGCATAAGG 985025 29 96.6 32 ..............T.............. TGTCAGCGGACTTATGGAGATTGCCCACGCAA 984964 29 96.6 32 ..............T.............. TATGGCGTATACATCAACACGCCAACCGTCAC 984903 29 96.6 32 ..............T.............. GTCATAGACGTAGCGCCACTCGACAGCCCGTT 984842 29 96.6 32 ..............T.............. GGCATGAACCACGTCGCCATCGTAGTTAAAGA 984781 29 96.6 32 ..............T.............. CGGTATTTCGCGAAATAAGGGTTCGCCTTTTG 984720 29 96.6 32 ..............T.............. TCACCTCAATCCTCGAAAACATCACCGCAATC 984659 29 93.1 32 ..............T.............T TAAAAGTCATTGACGAATTGTCGGCTGTAGTG 984598 29 96.6 32 ..............T.............. TGGATCTATACGGCAACAATGACCCGGCTGAT 984537 29 96.6 32 ..............T.............. CGAGGGGACGCATGGTATAAGTGACGCCGTCG 984476 29 96.6 32 ..............T.............. AGGTCGGCGGCGACCGCCAGCACGCAATCGGA 984415 29 96.6 32 ..............T.............. GTTGGCCGGCATCACCGGCGTTACGGGACAGG 984354 29 93.1 32 ..............T.............T TCGACGAGCATGAGACCGAGCTCACCGCCCTT 984293 29 96.6 32 ..............T.............. CACACTTCGCCAATGGCTTGCATAGCGGCTGG 984232 29 96.6 32 ..............T.............. CAAAGCGTACTCGGCAGCATGTGGGGCAATCT 984171 29 96.6 32 ..............T.............. GCGCTGTTACGTGCGTTGACGATGGCGCGTTT 984110 29 96.6 32 ..............T.............. ACCGTGCGGGTCATAATCGTAACAGACGATAA 984049 29 100.0 32 ............................. ACGGATCCGGTAAAAACGTAGCCTCGAAACTG 983988 29 96.6 32 ............................T CCTTCCAGGTCGCTCAGGTCGCTCAATGATCG 983927 29 100.0 32 ............................. CGGGGAATCCAGTCCAAGGGTCAGGCCGCGGA 983866 29 100.0 32 ............................. CGTGAAAGTCGGATACGCTGGAGGCACGACTG 983805 29 100.0 32 ............................. ACGCTTGCCAACTTTTCCAGCATGCGGCTGGA 983744 29 96.6 32 ............................T GGCGGTATTGTTCGTGGCTTCGGTCACGGCGG 983683 29 100.0 32 ............................. GTGCAATTGACCTGCGTGCTAGCGCCGGTCGC 983622 29 100.0 32 ............................. AGTACGCCTCATGCATGGCCGACAACGTGATT 983561 29 100.0 34 ............................. TCGCGTTGAGCATTTCGCCCGTGTCGATGGGCAG 983498 29 100.0 32 ............................. TGCACGAGCAGCTCGACAATCTCGCCAAGAAC 983437 29 100.0 32 ............................. GACATCACGTCAGGCGGTTTGCTGGACGTTGA 983376 29 100.0 32 ............................. AGTTCGCCGGCAACGAGGCCGGCTGGGCGCGA 983315 29 100.0 32 ............................. ACTCTCAGGCGTTCGCCATCCCACCAGCTGAC 983254 29 100.0 32 ............................. GAGGTGGATGTAGTCGGATACGATCACGGCCT 983193 29 100.0 32 ............................. CATTCGAAACGTGCGGCGAGGATTGATGTTGC 983132 29 100.0 32 ............................. AGGCCATGAACCGTACCAAACCAACTATGAAA 983071 29 96.6 32 ............................T CTGGATATTGTGCCGCCGTCGATTCTCGGCGT 983010 29 100.0 32 ............................. CAGCCGACCACGCCGTTCCACGCGTTCCTGGC 982949 29 100.0 32 ............................. ATGTTTCCGGCCATGCAAACGTCAATCTCACC 982888 29 96.6 32 .........A................... CCGAAAGACAAGCCCGCCGAGCCACGTCTGGA 982827 29 100.0 32 ............................. GTTTGGCCTTGGTCGATGCGTTTCTTGCAGTG 982766 29 100.0 32 ............................. GACCAGGCACAGGCCGACTACTCGACGGCCGA 982705 29 100.0 32 ............................. AGTACGTCACATACGCTCGGCACCAGCGGGTC 982644 29 100.0 32 ............................. ACGTCGCCGTAGTCAGGCGTGGTGTCATCATT 982583 29 100.0 32 ............................. AAGACGCCGAAACTTGCGGAATGCTCGCCGCA 982522 29 100.0 32 ............................. CACGCGCCCTCACCGGTGGAATCATCCACCTT 982461 29 100.0 32 ............................. ACCAGCACGACCACAGGCGGCGCGCACTGCTC 982400 29 100.0 32 ............................. CCATCCCAATCATCCGAGAACCTGACGTTCTG 982339 29 96.6 32 ..A.......................... GCCAGGCATCCGGCGATTCGCCTACCGTCACC 982278 29 100.0 32 ............................. AAACGGGAAGCATCAAGGCATCCCCACAATCA 982217 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 982035 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 51 29 98.0 34 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGTGTCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCCATATATGAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATATCCATAAATTTCGACG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : GTGTTCCCCGCATATGCGGGGATGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //