Array 1 110039-107873 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBR01000004.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2719 NODE_4_length_352822_cov_3.23688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110038 29 100.0 32 ............................. TGTACAGTGTCAGTTATTACCTGACACATGTC 109977 29 100.0 32 ............................. CTGCATAATTGGCCTGGCAAGGTCAGTGAAAG 109916 29 100.0 32 ............................. TAAGAGGCGGTATCATTTTTGTCTTCGGGCGG 109855 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 109794 29 100.0 32 ............................. GCCGTTGATAAAAAAACGGGCGAACTGGACAA 109733 29 100.0 32 ............................. AAGAACGTTTGCAACTCCCTGGTGAAGCGGTG 109672 29 100.0 32 ............................. TTTTTTGCGTCCCTGCCTCCGGATGAACAGGA 109611 29 100.0 32 ............................. ACCTCAATAAAAATTTACACCGCCACACCGGC 109550 29 100.0 32 ............................. GCGATGCTCAGGATTCAGAATCTGAACGTCCA 109489 29 100.0 32 ............................. ACGCTGAACCTGAAAAGCACGTTGCCGGGCGA 109428 29 100.0 32 ............................. GATGGACACCACAACTACGCGGCGGCAAAACT 109367 29 100.0 32 ............................. ATCGGGGAGGTTGTGCAAGGGATTTTATCGTG 109306 29 100.0 32 ............................. TCAGCAAAAAAGACCTGTTTGCCGATATGGGG 109245 29 100.0 32 ............................. AACCGGAGGGGGTTCCTGCCGGGTACGCATAA 109184 29 100.0 32 ............................. CAGCCCCTCTAAAATTGTTGCCCGCCACGTAA 109123 29 100.0 32 ............................. AAAACCAGCGATAACGGGCGGGCGTTTATACG 109062 29 100.0 32 ............................. CGACGCCCGATTCCTGTTGCCAGCGCCCCGCA 109001 29 100.0 32 ............................. GCCGCTATCACCAACGACCCGGGCGTTGTTGG 108940 29 100.0 32 ............................. TTCCGTCGTGTAGCCCGCTGGTTTGGGTCGGA 108879 29 100.0 32 ............................. TTGTTATCCCGCCTGTGGTTTAATCGCGAGTG 108818 29 100.0 32 ............................. CCGGGTGCATCATGCAAAATCCTATAAGGAAA 108757 29 100.0 32 ............................. AATTGTCAGTGTAATTGCGCATATCGTTCGTT 108696 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 108635 29 100.0 32 ............................. ATAAACGCCCATTTTGTGAAAGGCGCTATGAG 108574 29 100.0 32 ............................. GCGACGCAGGGTTTAACCGGTTCCCTGGCGCT 108513 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 108452 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 108391 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 108330 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 108268 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 108207 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 108146 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 108085 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 108024 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 107963 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 107902 29 96.6 0 ............T................ | A [107875] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCTGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121011-119702 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBR01000004.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2719 NODE_4_length_352822_cov_3.23688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121010 29 100.0 32 ............................. TCGTCCGAACGTACCCTGGCTGTCCAGGCCGC 120949 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 120888 29 100.0 32 ............................. CTCACCCGATTAAACAAGAGGAGCGCAGAAAC 120827 29 100.0 32 ............................. TTTATATCCAGTTTTCGGCAGAAGCGCCGCAA 120766 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 120705 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 120644 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 120583 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 120522 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 120461 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 120400 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAAACC 120339 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 120278 29 100.0 32 ............................. CAGCGCAGACTACTGGCGCTGACGGCTCGTAC 120217 29 100.0 32 ............................. CCTCCGGAAGAGCGGAATCCGACATAATTATT 120156 29 100.0 32 ............................. ACTCGCTTATGCATAGTGACAATTGGGCAACC 120095 29 100.0 32 ............................. TTGAAAGAGCAATTAGCGCCGCTGGCATCAAG 120034 29 100.0 32 ............................. GCGCCGCGCAGTTCGTGGACGCGAAACGGATT 119973 29 100.0 32 ............................. CTACACATGCACCGGGTATCCGTGAGCATGAT 119912 29 100.0 32 ............................. GCGGGCATGTAAATAGCAGGTCAGCAGATACG 119851 29 100.0 32 ............................. ACACAAATGCAGTTAGCTAATCGTGCATGGCG 119790 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 119729 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //