Array 1 160058-159113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHKM010000001.1 Aerococcus sanguinicola isolate As-24-U13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160057 29 100.0 32 ............................. CAGCGTGTTTTCTGGGTACTTGATAGGGGTTC 159996 29 100.0 32 ............................. CACGGCCTAGGGACGCGCTATCCCCTTGTGCA 159935 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 159874 29 100.0 32 ............................. ACTTACTACTATTGTTACTAACTGGAAGCATA 159813 29 100.0 32 ............................. TCGCTTAACTAAGTTCGTTTGATTATCAGTAA 159752 29 96.6 32 ............................C ACAAAGTCTTCATCAGCAAATAGATCATACCC 159691 29 96.6 32 ............................C TAGACCGGGCGACTTCAAACATGCTTTACATG 159630 29 96.6 32 ............................C TTCAGGGAAGCTTGTCATCTCATTTAATGACT 159569 29 100.0 32 ............................. CGATTTGTGGATGTGATTAATGATTTGCTGGT 159508 29 100.0 32 ............................. ACTGGGGCAGTCATTAAACAGGGCGACACCAC 159447 29 93.1 32 ...T........................C TACGGCCTCAATATCAACTGGGGCGGGTCCTG 159386 29 96.6 32 ............................A AGTTCCTGATGACTTGAATGAATATGTGTTAG 159325 29 96.6 32 ..............C.............. CTAATTGAAATGTGATAAAGCTCCCGACCAGT 159264 29 96.6 32 ............C................ CCCGAACATCTGCGAAGCGGTCGCCTCGTAGA 159203 29 96.6 32 ............C................ ATATAAGCATAAAGTTCATAAAACGTGAACTT 159142 29 100.0 0 ............................. | G [159120] ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 CTTCTTCCCGCATATGCGGGGGTGATCCT # Left flank : GATCCTAAAAAAGATCAAATGATCGAAATAGGCGCTTTAAAGATAGATGGGTCAGAAGAGAACATCTTTCATTCTCTGATCGCTAATAAGAAAATCCCTGAGCAAATTCAAAAACTAACAGGGATTAGCCAGAAAGACATAGATGAAGACGGTAAAGATGAATCGCAAGTACTTGCAAAGCTTCTCGAATTTATCGAAGGTCAGGTTATTGTCGGTTACAATATCAATTTTGATATTAGTTTTATTAATGAGCAATTGAAAAAGATGGGACAGGAGAATTTATCTAATCCAATTCTTGATTTAAAGACTATTGTCAAAAAGGAGAAGATGTTTCTAAAAAATTTTCAATTGCAAACAGTTTTAGCGAGTTACGGGATCAATAAAAAAGTCCCCCACCGAGCCTTGGAGGATGTTAGATTAATGGCTGAGCTCATTTCTAAAGTGAATAAATTTCCAGTTTACTTAAAAAAGAAAGCCCGGTAATACAGGGATCCTTTAGT # Right flank : ATTAGCGTTTACCCTCTAAATATTGCAAATTGTAATATATAATTAAGAAAAGAAGTGAATAAAGGGAGGTATAAATATGTTTCCTGAGATTTTGAAGAGCTACAGAAAATCAAGAGGCTTGACTCAGAAAGAATTGGCGAATAGGCTACACGTTTCTCAACCTACTATCGGGAGTTGGGAAGTTGGCAGGACGGAGCCTAACCAAGAAATGCAGAAGAAAATAGCCGATTTTTTCGGCATTTCTGTAAATACCCTATTGGGAGTAGATGATAACGATTCGGTTGACTTGAAAGTGTTACTTAAAAATTCAAGCATGACATACGGCGGAAAAGAAATAAGCGATCACGACTTAAAAGTCTTGGAAGGCATAGTGGAATCGCTGCTTGGCGGTGATGAAGGTGGGGATAGATAGCTTAATTTCAGATTTAATCGCTAAATATAATACAAACGATCCTTTTGAGATAGCAGAAAATGAAGGAATACTCTTCTCCTTCTTCCCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154849-155854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHKM010000004.1 Aerococcus sanguinicola isolate As-24-U13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 154849 28 100.0 33 ............................ CGCACGGAGAACGTCAAATAAAGAGGGGCTTAT 154910 28 100.0 33 ............................ TCACAGTGGAATGCCGTGTAAGGAACGCCACAG 154971 28 100.0 33 ............................ TCCGGTCATCAAGGACATCGAACCCGTAGACAA 155032 28 100.0 33 ............................ TGGCTTTTTTTTGTTTTATGGATTTCAAATCCA 155093 28 100.0 33 ............................ CGCTCAAAAAGTTAGCCGAAGCACTGGACGCAG 155154 28 100.0 33 ............................ TAAATGTTGTAAGCGGAAAGGAAAACCTTGCTA 155215 28 100.0 33 ............................ TGATGTCTTCGCTATCGTCAAAGATTTCTGATT 155276 28 100.0 33 ............................ TGTAGGAGATAATCCATCTTTGGAATAGACTCT 155337 28 100.0 33 ............................ CCGTTTGGCCCCACTGGTCGACATGATGTTCGC 155398 28 100.0 33 ............................ CTGTTTGTATCATCTTCGGTCACCCATTTAATC 155459 28 100.0 33 ............................ CCGATTACGAAAATGAACGAAGGAGTTAAGGAG 155520 28 100.0 33 ............................ CATACCCTTGAACCTTATTTGGTTCTAAATCCT 155581 28 100.0 33 ............................ CCAACTTATTTTTTGAACGTTCTACCACATCTA 155642 28 96.4 35 ...........................T TGCTGAGTAGATAGTTAAAGGTAATCTGAACAGAA 155705 28 100.0 33 ............................ CTGTTATGCGCGGTATACAAAGAAGGATACTAC 155766 28 100.0 33 ............................ TATGCTAGCCGCCTACCCAGCCTTATTTTATTT 155827 28 75.0 0 .................A.A...TCCTT | ========== ====== ====== ====== ============================ =================================== ================== 17 28 98.3 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTATCCAACAAATCATTCGCTTTGGCTTGATCGGAGTCCTTGCCACAGTGATTGACTTCGCTCTATTAACGGCCCTCACCGAATGGGGCTATGTTCACTACCTATTATCAGCGGGAATTGCTTTTGTTGTCGCTACGATTTTTAATTATCTTGCTAGCATGCGCTATGTTTTCGTGAGTCGTTTCTCTAAAGAAGAGCGGCTTCAGGAATTACTCCTGTTTGTTAGCCTGTCAGTGGTAGGTTTGATTCTCAACCAGTTCTTTATGTGGGCCTTCGTCGAGAAACTTGGCATCTATTATCTCCTAGCCAAAGTCCTAGCTACCTTCCTTGTGATGGCGTGGAACTTTATCTCAAGAAAATTATGGATTGAATAAGGCATGAGGTTATCACTGGTTAAAGTGACCGAGATGGCTTATAGTAGCTATAGGGGATTTTTTTAAAGTGAATGAAAATGGCCGAGGGATCAAAAAAGAAGCCTGATTTGATGGGATTTCTTTAGT # Right flank : TTACTCAGTTAGAAAATCAAGGACATAATTATTACTAACTCTTTTCCGCCTAGACGGATACTTTTACTTCAGCCCAGATGAAAGCAATATTCCTTTTTTGATAATATTTCCCGATATCCCGAGGGCTATCACTCAGGGGAAGGATATAGTCGACGCGCTTTATATGGCCAGTGATTGTCTGGGGATCCATTTGGCAGATGCTTTAGAGCGTGGGCAAGCTTTGCCTGAGCCAAGTTCGATGTCTTCCTTGTCTTTAGATGATTTCCTTCCAGATGATGATGATTTCCATTTTGAGCGCAACCAATCCTTTATTTCTATGGTTTTAGTCGATCTCGATGATTATACCAGCAATTAAATCAGCTTTTCTAATCAGAAGCGAAGAGCTTTTATTTTAAAGCGTCCAAACTTTTGATACAATAAGATTAAAATAAGTAAGTGAAGGATGATATTATGGCCGGAAAAGTACGTGCAGCTTTGACCCATGCTCAAAATACCCAACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //