Array 1 59104-59376 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUG01000389.1 Streptomyces sp. SM5 1400_62045_6997595_593+1263+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59104 29 100.0 32 ............................. AGCAGAAGCAGCGTCTGGACGAGTTCGGGGTC 59165 29 96.6 32 .C........................... AGGCCGCTGGTCGTGTTCTTCCCGAGGGGGAT 59226 29 100.0 32 ............................. CCGGTTCTGCTCGGGGGCGCCGCCCTCGTCCT 59287 29 100.0 32 ............................. TGGCTGCGGACATCGCTCGCCCGCGCGACGAT 59348 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGCACCGGCTGGAGCGCGATGACTATTCCCCGCGTACGCGGGGGTTGCCGTGCTCGCACCGAGGAAGTTGGAGCATTCTGGAACCGTGGCCGAGTTTGCAATGGGGCTTGACCGCTTATAAGCCCTTGCGCGCTCGCATCAGGCGTTTGCAGGCTTGATCCGCTCCGTCATCGAGGAGAAGTACTGTGACTCCCGACTCCCGTCCCGGGTGCGGCGCCGTCGCCTGGCGCCGGTCCAGCTACAGCAACACACAGGGTGGCGATTGCGTCGAGGTTGCTGACGGATTCTCCGGTGTGCTCCTGATCCGCGACAGCAAGCGCCCGCAGGGGCCGGCGCTCGTTTTCGGGGTGCCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGTGGACCGTTCCGCGTAGGGAAGGCTCGCCGGGTTGGGTATTTTGCGTGCGATGTCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGTTGCTAAACCTGCTGGTCACGCAGT # Right flank : CGACCACGCCCCTCAGTGGCGCGAACGGATCTACTGCTCTTATCCGGACAGTTTTGGGTTCTGTGGCGGTGGCTTCCTTCGATCGGGTGTCACCCTGCCGAGTGGGGGCGTCATCTCCTTGCCGTGCAGTGTCTGGCGCTCTCATCAGCGACAGAACAGAGCTGGCCGATGAACTCGCGGTAGCTGTCGGGGGCGTCGCGGTCCTTGATGGGCGGTCCATCGATCCACCGCTGCCAGAGACCGTCCGGGATGAGGAACTGGGCCGCCTGGCCGGCACCGAGCCGGGCGTCGAGCAACAGGAGCGCGCCGAGGGCTGCTGTCTGGTCGTAGTAGAGGTCGGGGCGGCGCAGGTAGCGGTCCAGGTAAGCGACCAAGAGGTCGGCGTCGGCAGAGGTCCCGAAGGTAGCGAGGGCAACGCAGTAGGCCTGCCCCGCGTACGGTCCTTCGCTGGCGAGCAGGAGTTCGCCGAGGCGTTCGCGGAACTCGGTCCTGCCGTTAAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 465-737 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUG01000477.1 Streptomyces sp. SM5 1506_1215_210763_1263+53+1263+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 465 30 96.7 31 .............................T GCATGGGCCTGTACACCCGGAACACCTTTAC 526 30 100.0 31 .............................. AGGCGAAGGCCGCCATCGCGGACGGTGACAT 587 30 90.0 31 .T.......................T...A CCTCCGGGTCCTCGACCTCGGCGGGGCAGCA 648 30 86.7 31 .T......T................T..T. GCACCTACAGCTACAGCGAGACCTTCCGCGG 709 29 80.0 0 .T...................G.T.-..GT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 90.7 31 CCGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : ACGCGGGGGTTGCCGTGCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGTCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTGCTGTGACTCTCGGCTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACGGGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCTCCGGTGTGCTCCCGGTCCGAGACAGCAAGCGCCCGCAGGGGCCGGCGCTCATGTTCGGGGTGTCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGTAGCTAGCCAGGTTGGGTTTTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGCTGCTAAACCCCCTGGTCACGCAGTC # Right flank : GCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGTCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTGCTGTGACTCTCGGCTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACGGGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCTCCGGTGTGCTCCCGGTCCGAGACAGCAAGCGCCCGCAGGGGCCGGCGCTCATGTTCGGGGTGTCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGTAGCTAGCCAGGTTGGGTTTTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGCTGCTAAACCCCCTGGTCACGCAGTCCGCTCCCCGCGCACGCGGGGATGGACCCT # Questionable array : NO Score: 3.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8589-8070 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUG01000489.1 Streptomyces sp. SM5 1518_16062_1763832_1025+100N1350+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8588 29 96.6 32 ............................T CGGGTCGACCACCCCACGATCGGCCCTGTCCA 8527 29 100.0 32 ............................. GGTTCTGGACGGGGGACCTTGACGCCAGGCCA 8466 29 100.0 32 ............................. ACACCAGCCCACGCCCGGGCGTAAGCGATCTG 8405 29 100.0 32 ............................. TCGTCCTCCCACCGGGTGCGCGCCATGCCGCG 8344 29 100.0 33 ............................. GCGAACGCCACGCAGCCCCCGGCGATGGGTACC 8282 29 100.0 32 ............................. GTGCGGGTGGTCTCAGAATCCACCTACCGACG 8221 29 100.0 32 ............................. CGGTTCGTTCGCATCAGGTGCGTTTGCGATTC 8160 29 89.7 33 ...........T..T......G....... GAAGCCGAAGCGCTCCGGGCGCGGGGCTTCCTG 8098 29 89.7 0 ...........T.........G...C... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGGTGGACCACCAGCAGGTTGGGCCCGGAGCCGTCGTCCAGGGCTGTGACGGTCCGGCCGTCAGCGGATGATGCGTGAAGCTCAGTCATACGTACAAGGGTGTCGGAGCTGCCGACAACACGCCCGCAGGCGATTGAGCGTCACGCGCAACCTCGTTGTCCGCTTCGCTCCGCGCATGAGCGCTCGTCCGATGGTGTGCTTTCGCGAGATCTCGTACCTGTCCGGCGTGCGCCTGCACACCGCGTCCCGGGCGAAGATCCGTCACGGGGTACGTCTCCGGCCGCAACAGCCCGACATGGGTGCGCTGGGAAACGCAGCAGATTGCGGTGCCGAGACGGCTGATGCCTGACTGATAACTGGTCTCTGGCGGCGGGAGCTTGGCTAGGCTGGCTCTCCGAGGGTAGGGGGTCGTTACGTTGAGGCTTTTGTGCGTAATGCCGGAGTCGGCGAAAGCGCTTCAGAATGACCGGCCGCGCAGGTAGACCCGCTGGTCACGGAGT # Right flank : GACCGTTGAAAGTCGGCGTAGTTGAGCGTGTCCTGTTCCCCCGCGTGAGCGGGGATGAACGATGTCGCAGCGCACAGCGACCGGAGCGCCGTCCTCGCGGCCGAGCCGGAACCGGCCAGGAGGTGATCGAGAACGGCTCCTGGGCACCGGACACCGGTGTCACCGGACCAGACCACCCGGCACCGCGTCGGCCGGGGCGTCAGTGACGAGGTCTGTGTGGCGGGCCGCCCGATACCGCGATCCCCCGGGGTCTCGCGGCCCGCCATGGTCTCGCGGTGGACCGTCCGTTCCAAGGGGGCATCCGTCGCTGGGAGTAGGTCCCGTGCCTCAGGTGCCCTCCGCGCCCGCTGGTTAAGGTCGGTCCGTATGGAGACCTCAGGAACCGGTCGTCGCCCGACGGCGGAGCGTACGCGCGACGTGCTGGAACGGCTCGCCACCGAGCGGGACGTATGGGTGGCGACGGCTCACCCTGATCACGGGCCGCACCAGGTGCCGTTGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15599-15326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUG01000489.1 Streptomyces sp. SM5 1518_16062_1763832_1025+100N1350+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15598 30 96.7 31 .C............................ CGGGGGCGTCCTCATGGGCGCTGGCACCCTG 15537 30 90.0 31 .C.T.........................A TCACGTACCACGTCGCCGACATGACCGGCCA 15476 30 100.0 31 .............................. CCACACCCTGCTCCGGGTCGAGGCCGTTCAG 15415 30 96.7 31 .............................G CCCCCGCCGATCTGCGCCCCGCGCGCAGGAC 15354 29 90.0 0 .....................G...-..G. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : ACGCGGGGGTTGCCGTGCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGTCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTGCTGTGACTCTCGGCTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACGGGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCTCCGGTGTGCTCCCGGTCCGAGACAGCAAGCGCCCGCAGGGGCCGGCGCTCATGTTCGGGGTGTCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGTAGCTAGCCAGGTTGGGTTTTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGCTGCTAAACCCCCTGGTCACGCAG # Right flank : GCCAGCACCGAGAGGGATAAGTGAGGTCCGAGACAGCAAACGCCCGCAGGGACCGGTGCTCGTGTTCAGGGCGTCGGCCTGGTCCGCCTTCGTCAACGAGTTGAAGGCGAACCTTCCCGCGTAAGAAAAGAGGTGCCGGGCGTGAGAGCGTCCAGCATTCTGGGACGCATGCACGTCCAAGTGACAACGCCCCGTTACGAGATCCGCGCCCAGCACACCGCCTCGACGGTCACCGTGTATCAGGCGTACTCGCCCGCCATCGGGCTGCCCGCCGTACGGGACGGTCGATTCCCGGCAGCCTGGAAGCGTGACCGGATGACGTGGGTCAAACCCAGCTTCCTGTGGATGATGTACCGCTGCGGGTGGGGTACGAAGGAGGGGCAGGAGGTCGTGCTTGCCGTCGAGGTTGAGCGGGCGGGACTCGCCTGGGCGCTGGAGCGCGCGGAGCTGTCCCATTACGTGCGTGACGTCCACGCGGACGAGGCAACCTGGAAGCGGAG # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //