Array 1 221274-222145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWC01000004.1 Thalassospira profundimaris strain R4-5 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================== ================== 221274 37 100.0 32 ..................................... TGATGGCGCATCCCAGTCAATTTCGCGCATTG 221343 37 100.0 210 ..................................... CTGGGGCGGGCGGGGCGGCACAGTGATGCCGCCCCGGAAAAATCAACAGATCAATTCGGGTGCAGATTGATCGTCGGGAAATACTTTTTGTTCAGCTCGGCATAGGAGCCGTTTTCAAGCATTTCAGCCAGTGCCTTGTTGAAGATCTCTTTGAGATCCTGGTCTTCCTTGCGGATAATCAACCCCTGTTACAACGCTTGGGCTGATATA 221590 37 100.0 43 ..................................... TTCTTCCGGGGTTTCAACGAACAGAACTTTCAGGTTCTGCCAT 221670 37 100.0 33 ..................................... ATCCTCTTCAGGAGTGGAAAATTCAACGCTAAA 221740 37 100.0 38 ..................................... TCGGTGTCTTCAACTTCAACCCACTTTTTGCCATCCTT 221815 37 100.0 34 ..................................... GCCAAATGCAGCAAGCCAGAAGTGATGAGTTCTT 221886 37 100.0 39 ..................................... ACACAGCCCTCAAGCCCATTTCATCAAAGTACGCGATGA 221962 37 100.0 39 ..................................... ACGCTCCTCGTCTTTCGAGAATTTTTCGACTTTAGAAAA 222038 37 100.0 34 ..................................... CGCTGCTGCGCCTCGATGTCAGATGGGCTGTTTT 222109 37 78.4 0 ..........G............G.....CC.CCCC. | ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================== ================== 10 37 97.8 56 GTCTGAGACCATGTTCCGCGACTAAGCGGATTGAAAC # Left flank : AAATTGACCGGTCGCCGCGAAATTGTTGATTACCTGCTTGATGGGTCCCGGTTCATTGCCATCGAACGTTTTGATGACGCGCCATCACGCCACGCTGGTGCATATGCCACCCATGGTCAGATCCAGCATGGCGCCAACACCAATGTTTACGTGGCCGCCGAAATCCTACGCGAGGTGGATCAGGCCCTGCTCGACAACAAGATTGATCATCGCGACCGCGCGCGGATTCTCGAAGATGTCCACAATGCAGAGGTCGCTCTGGCAAGCTTGCGCGCACATCTCAGTCCGCCGGGGGCAACAGACTGACCGGCCTGCATGGCAAAAAAAGCTGGCTTTTCAAATCCACGGTGGAAAAATGTTATCTTGATGTTTTTATTTAATAAAATAACAAGACTTCCCAACGCGCACTTAAATATCTCTCCTCAGATGTGCTTTGTATTCCTTCGAGGTGGAAAGTGGCACTTTTTCGGAGGTCTTGACAAGCAATTGGAAATGGGTGA # Right flank : CTACCCTTGCGAAGAACGAAAGTATCGAGCGCAGGCCCTGTTCGGAACATAAGACGCTTGAAACGACAAAGGGCGGTCACGCAGGTGACCGCCCTTTGTCGCATTGCCATTCTTGAGAATGGATATGTTTAAGGCCACTAGAACTTGCTCAACTTCGAATGACGGTCGCGGATTTTCGCAAAATCATCAAGTTGAGGATATTCCAGCATCGCCGAGTTTTGATCTCCTTGTGAGGGGTCTGAATAGTCCAGCAGGCTCTTAATCGGCTCGAGATCTTCGAATCTTGTGTCGGTTTCACCGATATCTCGAAGTATGTAGGCTTTGAAATCAGCAACTGCACTGAAGGCGTCTCGCTGATCTGCGCCTCTGATTTCAGTAATTGCCGTTCTCATTGCCCCATATCCATGCCCCTTGGCCCGACCAATAGCATGAAGGTGAGAACTTTCTTTGTCCGGATCGCCCAGACAAATTGACCAGAGCAAGAGCCCAAGTTCTTCCTT # Questionable array : NO Score: 4.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:-2.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAGACCATGTTCCGCGACTAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 2 230100-229403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWC01000004.1 Thalassospira profundimaris strain R4-5 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 230099 37 100.0 35 ..................................... AAAAACTGCACAGCACCCGGCGCAACGCCGGCCGA 230027 37 100.0 38 ..................................... ATTCGCCAGCGTACTGCGATTCGCTTACCTCAAGGTAA 229952 37 100.0 35 ..................................... CCAGCTGGCCTTTGCCTTTGCCAAATTGGGCACCA 229880 37 100.0 37 ..................................... CCATGAACAACGGGGATGTAAAGTCGTCATAAAGTTG 229806 37 100.0 38 ..................................... TTGATACCTTCGGCACCTGCCACGATAAGTGTTCCAAA 229731 37 100.0 34 ..................................... TCGTTGGGACATACGTCCCAAGAACGGTTGCCAC 229660 37 100.0 38 ..................................... AAACCGCATCAGAACACTTCCGTCCTTCATCGGTTTGA 229585 37 100.0 37 ..................................... TCACTGCTCCCTTCTTCCTCTTCGAACCCAAGGCTTA 229511 37 100.0 35 ..................................... TCATCCCATTTGAACATGGTCGACATGCTGTTGCC 229439 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 100.0 36 GTCTGAGGTTGTGTTCCGCGACTAAGCGGATTGAAAC # Left flank : CCAAACAGGAATGGAGGCGACAATGGCCGGTAATCGACAACTGACCATTTTCAGCTATGACATACGTGATGACCGGCGCAGGCGGCGCATTGCGCGCCTGCTTGAAGATCAGATGGTGCGCGTGCAATACAGCCTGTTTGAAGCCCCGATGACCCCTGATGAGGTGGACTTGCTGCGCGATGCGGTCGAGGAGGAGCTCGGCGCCGATGATAGCTTGCGGGTCTATATCCTGACTTCAGATTGTGTCCGGCGCAGTTTTCAGGTCGGCGGTGTGCCATTTCCGGCAGAACAGGGTCATTTTCTTTTCTGATGGCTCGGACCGCCCCATGATTCGTTTTCAAATCCACGGTGGAAAATGGATAAAACACAGAAAATGCTATATAATTTCAGAATTTCAGGCTCAAAAATAAAATGGAGGCCTTTAGAATATCGAAAAGTACACCAGCTGGTGGAAAGTGGCATTTTTCCAGAGCCCTTGACAGCAGGTTGAGAATGGGTAA # Right flank : TGCCAGCCTTTGTCCATGTATTGGAACTGGTGGGCTGCGAAATGGTTCCGTGACCAAGTTCTGTTCTGCGGTGGTTTCGCTCACTCTACCCTTAAGGGTGGTAGGAGGGTGGTAGGGCGATGGAATTGTGCGGTTAAATCCGTCTTTTTCAAAAAACTGGCAGATTTTTGATTTTCATGTCTGTTTATATTCCCCATAGTTGATCAAACGTTTTGGTTGTGTTGGATGGCTTGTGCCAGTGGGGGGCGTGTGAGCGTTTTAGTGCGTATCCAGGGGATCAATTTTCAAAATACCCTTTATGATACTGACGATCTGAGTACCAATCGCGGGGCCAGTCTGGCCTATTTGACGGCACCTGATGCCATTATCGCAAAGCTGGCTGCAGAACAGCCAGACTTGAAAGTCGAGACGGTTTTTACCGGTGCATCGGGCGGGGTATACAGCGTGGAGGGCATGGATGCCGAAACGCTCGATCAAAAGGTTGTCGGGCTTCTGGATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAGGTTGTGTTCCGCGACTAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 3 233162-233777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWC01000004.1 Thalassospira profundimaris strain R4-5 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 233162 37 100.0 31 ..................................... AAACGTGCAACGCGGCGTACATTGCTGGCGT 233230 37 100.0 35 ..................................... TTGCTGTTTCCAGCTGTTGTTGCTCTTGTTTGTTG 233302 37 100.0 34 ..................................... GCGCGGGCGGCCATGATCGACTTTTCGGCCAACC 233373 37 100.0 38 ..................................... AAGGTACCCATCGCCGACAACGTCACCTTGCCACCTTT 233448 37 100.0 36 ..................................... GCAGGTTTTGCAGGGCTTAACCAGCTCTGTCACTTC 233521 37 94.6 35 ..A........C......................... ATCTGCAAGTTTGCAGATAATGCGGTCACCTTCTT 233593 37 94.6 38 ........T..C......................... AGTGCCAGCCTTGCGAGCATTCTTATCTGTATGCTCTG 233668 37 97.3 35 ...........C......................... AAAGCGTTGGTGCCGCTGGGCATTGCGAAGATGCC 233740 37 83.8 0 ...................T........C....CCCG | G [233770] ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.7 35 GTCTGGATCCCTGTTCCGCGACTAAGCGGATTGAAAC # Left flank : GATCCGACAAGGTTTTTGCAACGGCTGCCTGTACAACCCGGTCACGAACAACCGGAATTGCCAACATACGCTTGCCGCCACTCTTCTTGGGAATGAAAACGCGCCGCAACGGCAATGGGCGGTATTTACCGGCGGTCAACTCCTTGTGCAGAATCGCAATGTTGCGCTCGGCCAATGCGCCGAAATCCTCGATACAGACACCATCCACACCGGCAGCACCCTTGTTGGCCGCAACCCGCTCCCAGGCCTGCAACAAAGACTCTTCACTTGTTGCCTTATCCCACATCGCCGCACCCCGCTTCTGAGGTAAACTGAGGCAGACAATATCACATAAGTTTCAATCCGCGGTGGAAAAACAATAATATATTGATATATATTAGTAAAATTGAAAACCCGATGATTTTTTATGCAACTATGACCATCAGCTACCTCATATTTTTCCTATGGGGTGGAAAACCGGTTAAAAACAGGCCACTTGACAAAATAATAAAAAGGGGTGA # Right flank : GGCAACATGTTTCCCGGTCTTTCGACAGGCAACCGGAGCTTCACAGATATTGGGATTTCGGAGGACCGTTTGGGCTTCAGTCTTTGACTGCAACGATATGAATGCGGCCAAATCCGATCGAAGCCCGTGCACCGATCTGCAAAACGGGAGCGAAGCTCAGCAGTTTGCGAATGGCGGGCGTGATATTGGCGACTTCGATTGTGCCGGTAACCCCTTCGACGGGAATAACATTTCCGTCCTGTCGATATGATTTACGCCGCCAGCCGGTTTTGTCGCCCTGAATGCGTGAAATGCGAGCGGCGTGGAGTTCGTCAAGAAAGCGGTCCGGAAAAATGAGCTCGCTATCTTGCCAACGCGCCAGATTGCGGGCACGCTGCGCGAATGACACCAGAAGCGATCTGACATCCTGATCAAGACTGTCGCCTTGGCGCAATGCCAATGGCGTTTGCAATTCGATCAGATAGCGGTTGGCGTCAGGTAGGGGCGCAACCTGTTCATGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGATCCCTGTTCCGCGACTAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 4 251286-252784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWC01000004.1 Thalassospira profundimaris strain R4-5 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 251286 36 100.0 30 .................................... CCTCAAGCGAATACTGTGGTTGAGTTTGTA 251352 36 100.0 30 .................................... GTCACTCATCACGCTCTCCTATGTTGCGCT 251418 36 100.0 30 .................................... CGATGCTGTGGCGGGTGGTAGCGGTCTGGT 251484 36 100.0 30 .................................... GGAAGCAGATGTTTGGCGGGCGCTGAACAT 251550 36 100.0 29 .................................... GCGGCGTAATTGTTATTAAGAGAAATCAC 251615 36 100.0 30 .................................... TCGATAGTGCCGTTTGCGGACCTTATGTAA 251681 36 100.0 30 .................................... GCGCCCCGAGTTCACCGCGATGGCAGCGAT 251747 36 100.0 30 .................................... CCTGCTCAGTGATTGCGCGAGCATCCATAG 251813 36 100.0 30 .................................... AAGCGGATAAAGATCGATATGGATGCCAAG 251879 36 100.0 31 .................................... TCAAGCGTTAATTTGATGGCATTGATCGTCG 251946 36 100.0 30 .................................... TCCCGGATCCAATCCATGTAGGACATATCA 252012 36 100.0 30 .................................... AGAAAGACGCATTGATTGCGGAGCTGGTTG 252078 36 100.0 30 .................................... GCCCCCTCATTATGCCAAGCACACCAGCAC 252144 36 100.0 29 .................................... TCTCTCTCACAATGCGTTTTTCTCCGCTT 252209 36 100.0 30 .................................... TTGACACGAGGATACCCATTACCCCATAGC 252275 36 100.0 29 .................................... CAAAAGAGAATACCCCACCAATGATCAAA 252340 36 100.0 30 .................................... CTCACCAAAGCCAAGGACCAAACCAATGAC 252406 36 100.0 30 .................................... TGATCCCGGAAGACACGATTGCGCGGCAAC 252472 36 100.0 30 .................................... AGGTGAGTGATGGGGATGTTTGACTATATC 252538 36 100.0 30 .................................... GATTTGATGCTGCTGGCCTTTGATGGCGCA 252604 36 100.0 29 .................................... CAAAAGAGAATACCCCACCAATGATCAAA 252669 36 100.0 44 .................................... CAAAAGAGAATACCCCAGGCGATGAAGATAACGCCAGCGTTTTC 252749 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 23 36 100.0 31 GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Left flank : TCTGGAACCCGGCCATCATAGGTGAAGGTTCAGGGCTACAAGTTGCCTTGGCATTGATGGGCGGTGTTGTCGCTGCAATTTCGCTGGCAGTTGCCATTGAAGGATATCTGAATGGCAAGCAGAACAGGATTGCGCGGTGTATGTTTGTGGGCATAGCGGTCGCGTGTGTGGCGCCATTTATATATATCGCAATCCCGGGTATCTTTTTTGGCTGTGTGTTGCTTGTTCGCAATTACAACACCTCATCAAACACATCCGACAAAGTAACAGAAAGTCAAAACATTCCTGGAGCCTGATATCGCTCTAGTGTGCGAAGAAGGTATGTGCCTTTGTGCCATACCTTCTTTTTTTTGAGGGTGGAGAAAATTGTCAGCTTTTCTGTCACTTCTGGAGATTTTTGTCAGCTTTTGTGACAATTGATGACAACTTATCTGGCAAACGAAAACGCTAAGGAATTGATTTCGAGGGCAGTCGAATGTCACCTTTTGTGGCACATGACA # Right flank : CACCTTCGGAAAAGCTCCTGATTTCAGGGGCTTTTTTGACGTTCTGGCGGGTTCACAATCCTCTTATTCGTCGTTCAGAACATTTCAAACTGGCTGGGATTTTTGCGCGAATCCTGTTTTGTTCTACCTGTATATGAAACGATGTTCTCATATTGCTTGTCAGTGAAATACAGAATATCGACCTTGCCGCCAGCGGGCAGTTTCATATGGACTTTGCGCGTCATGCTTTCTGCCTGTTCCTTACCGGCACAGAAACGAAGGTAACTTGTTGAATTCATCCTCAACGGCGTCGCGGGACGGATAGAAATCATAGACGGCCTTGGCTCCTTCGCCGCGCAGTTTGGAGCGCACGGACTTTGGATTGGTATCCATGGCCGGGGTCTGGTTGGCCTCGTGATGTCGATGCTGCAATTCGCCAAGGGTGCGGCATCCCTCGGAAAGAAGGGCTTCATGCAGTTTTTTCATCCCGATTTTGGTAATGCCGGTTTCACTGTTTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //