Array 1 334563-336420 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPE01000037.1 Salmonella enterica subsp. enterica serovar Hadar strain ABBSB1121-1 NODE_127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334563 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 334624 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 334685 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 334746 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 334807 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 334868 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 334929 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 334990 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 335051 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 335112 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 335173 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335234 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335295 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 335356 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 335417 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 335478 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 335539 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 335600 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335661 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335722 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335783 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 335844 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 335905 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 335966 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 336027 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 336088 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 336149 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 336210 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 336271 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 336332 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 336393 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 353102-354841 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPE01000037.1 Salmonella enterica subsp. enterica serovar Hadar strain ABBSB1121-1 NODE_127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 353102 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 353163 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 353224 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 353285 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 353346 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 353407 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 353468 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 353529 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 353590 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 353651 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 353712 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 353773 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 353834 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 353895 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 353956 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 354017 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 354078 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 354139 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 354201 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 354263 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 354324 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 354385 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 354446 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 354507 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 354568 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 354629 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 354690 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 354751 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 354812 29 100.0 0 ............................. | A [354839] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //