Array 1 63991-65769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYJ010000006.1 Clostridium botulinum C strain IZSVe-TV_7573_4_12 NODE_6_length_168232_cov_64.7062_ID_3253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 63991 37 100.0 36 ..................................... TCAGGCGGCTTCCAGCTAAATTACAAAATCAAATAC 64064 37 100.0 36 ..................................... GTAAGGTTTCTGCTCCTTTAATTTTAGCTGAAAAAG 64137 37 100.0 34 ..................................... ACTCTTCCTTCATGCCCACAACTAAAAGCACCAT 64208 37 100.0 36 ..................................... TTTAGGAGGTAATATGTACAAAATTAAGCTGCGATT 64281 37 100.0 36 ..................................... ATCAATATATTCAATACCATTTGTTATCGCCTCGTT 64354 37 100.0 37 ..................................... ATTTATTTATTCGCAAAGAGGTGTAGAACAGTTAAAA 64428 37 100.0 35 ..................................... GGGAGTTAGTGCATTTGATTCACATGGTAAATTCA 64500 37 100.0 36 ..................................... ATATAGATCAATTAGATAATAACAACTTGGTTTTAT 64573 37 100.0 34 ..................................... TTGGCAATGGTGGATTTAAAGTTTCTATATCCCC 64644 37 100.0 35 ..................................... CTTTATGTGCTGCTAGAGATAAAAAGATTTATAAA 64716 37 100.0 37 ..................................... TAGGACATGGTATGAGTATGCTGGAGCCAGTGCTAAA 64790 37 100.0 35 ..................................... AGGACCTCTTGTGTAAGTCCAGCCAAAAACTGTCC 64862 37 100.0 38 ..................................... AAAAGTATCAATTGAAGGTTTAAAAATGGCTTTCTTGG 64937 37 100.0 37 ..................................... CAAAATATCTTTAATTCTCTACCCCAAGGATGATTTA 65011 37 100.0 34 ..................................... CTTCCATAACTCGTGAAGGAGAATGTATGTCTAA 65082 37 100.0 34 ..................................... AATTTACTGTTAAATGCATAGAAATTTATTTTAT 65153 37 100.0 36 ..................................... ATAAGTTTGGTTTGGAGATACAATACTTTGTATGTC 65226 37 97.3 36 ..................A.................. AATTCTTCATTTTCGTACTTCCATGTCTTTGATTTC 65299 37 100.0 36 ..................................... TAAATATAGAAATAGAAAATCACACGAAAGCTATAG 65372 37 100.0 36 ..................................... TCATATATTTTTCCTCCTATACTGTTACTGTGGAGG 65445 37 100.0 35 ..................................... ATGGGTAATGCTGCTGCTACAAAACTTCAGGAGAG 65517 37 100.0 35 ..................................... TTTACTGGAAATTGGTCAAGGGCTTGGGATGGAAT 65589 37 100.0 35 ..................................... CCGAATATATTTTCAATTTCTTTTCTTACCGTCTT 65661 37 97.3 35 T.................................... ACAGTTGAAACTAAAGTATCTCAACTTGTAATGCC 65733 37 94.6 0 T...................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 99.6 36 GGAATAAAAACATCTAAGCTCCATAGGAGATTGAAAC # Left flank : CTTTAATGAAAGAAATTGAATATATACCGTTTTTAATTAGGTAAAATAGGAGAATTTATGGTATGATGTATTTAGTTAGTTATGATATTGTCAATGATAAAAAAAGAACTAAACTTCACAAGTTGTTGAAAAACTACGGTGTTAGAAATCAATTTAGTGTTTTTGAATGTGATTTGGATGATAAGAAGTATGTTGAACTTGTATATAAAATTAATAATATTAAAGTTGAGTCAGGAGATAGTATAATGATTTATCCATTATGTTATTCTTGTAAATCAAAAATAGTAAGAAAAGGTTCGTTTATTGAAATTGATGTAAGAAATATGATTTTTTAATGCGCCAAGTTTAGTGTTTAAAAAAATATGCTACCATGGCGATGGCTATAAATAGCCATTTTTATAGAATTTTTAATAACACTGATATGAAAATAAAACTAATAATAACCACTGTGCGAAAAATACTAGTCTATGGTAGCCTTTATAAGGCATAAAACGCCGGCA # Right flank : TAGAAATATATTAGCAGAAAAAGGTAAGGTTAATAGGAATTATGAAATTTAATAGGAATCTGTATTAAAATTATTTATATAAATAGGATATAATAATTATATAAATAATTTTAATCTAGCTAAGATTGTAAGTAACAACTAAAAAATAATTATTATTTTAGTAAGTAAAAAAAAGAGTAACTCTTCTGTTATGATTATTTTAAATTAAAATAGATGATTTATTGAAAAAAGATATTAAATAAAATTTTATTTATAACTTCAGTTTGATAATTCTAAAAGTTGATTTTATTGAATTATATATGTTATTAAATTAAGTAATTTATTTAAAAATCATAGATATAGTTACTATATATATTTTTCAAAGATTTTTTAACTTTGAAATTTATATTCATGAAATTGTAAATGCGTTTTAAGATATTTTATAGCTAGTTTTAATATTTCACCCATTAAGATAATATCTAATTAAATTCTTATATAGTAAGATAAATTATAGTGTTGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAATAAAAACATCTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 7771-7158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYJ010000005.1 Clostridium botulinum C strain IZSVe-TV_7573_4_12 NODE_5_length_182541_cov_63.7759_ID_3251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 7770 29 100.0 35 ............................. AAGCAATATTCAATCGATAATGGATGGTTTAAAGT 7706 29 100.0 36 ............................. TGTTCCTCAGCCCTCATTTCTAGTTCTTTAGAATAT 7641 29 96.6 35 ............................C TTTCTTGGATTAGTAGTCTTTTCAAAACATATTTT 7577 29 96.6 35 .........G................... TCAGCTTTTAAAGTTATATCATCAATTATAAAAGA 7513 29 96.6 37 .........G................... GAAAGATAATTTTTATTTTCAAATACCTTTGATATTC 7447 29 96.6 36 .........G................... AAATCATCGAAAATATATGGTGCTTTATAATTGTCA 7382 29 100.0 36 ............................. CCTCCTTACAGTAAATTGTTTTTACTTGTACTTTTA 7317 29 96.6 36 .........G................... TCTTAATACTGTTGTACTACTTACTTTTTTATATGT 7252 29 100.0 37 ............................. GTTTTGTGTTTATAGAAGATTTTGATATACAAGACAT 7186 29 93.1 0 ................G...........T | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.6 36 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : GATACTATGCCTAAGGTTGTTATATTAGGTGAATATAAGTGGGGAAATAATGTGTTCCAAGGATTAATAAATAAAGATGGAATAAATATAGATGGACTTAAAGAAGTAATAGAGGAATACGAAGATTTTAGAAATAGTAAGATTTGGATAGGGGTTAGTAGTAGAATATTAAATGAAAATTTTCAAGGATTAAAGGAAAAGCTTGAAGAACAATTATCAGATTATGATGATATTGAAATAGGAAGTGTGAAGAGTGCTTTTGATGGATATTTAGAATATTTAGAAAAAACGATGTAATATTATATTATAAATTTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAATAGTGTTATAACATAGATATATCAATACGTCTAGCTATTTACTATAAAAAATGGTTCACTGCAAAAACACACTATTTATTTGAATTTTTAATGGTCAAAATATGGGATGATATAGTATAATAGAGACATGAAAAGAAAAATAGG # Right flank : AGATAATAAAATAAATAATCGTATAAAAAGAAAGGAAATAAAATATGAGCGACTTAAGTGATAAATTAAAGAAATATAAAGCAAAATCAGATGGTACTACTATATGTAAACATAATAATGATTTGTTTGTAGCTTTAGAACAATTATTAAATATACATGATATATCTGACGAATTAAAATCTTCGCTAAGAAAATGTATAAGTTATCATGATGTTGGAAAAGTTGTTGATGATTTTCAAAATAACATAGAATGTAAGCACAGAAAAATTAGGCATGAGGTACTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATCAAGATAGTTTAAATGAAGTAAAAAATAAATTAAATATAGAGACAGAAGATATAACAGAATATTTAAAGAAAATATGTAGAGGTAGCAGAGAAAACCATAAAAAATTACATGAT # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTGAACTATATTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 95316-95801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYJ010000005.1 Clostridium botulinum C strain IZSVe-TV_7573_4_12 NODE_5_length_182541_cov_63.7759_ID_3251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 95316 29 100.0 38 ............................. TATACACCAAAAGCTATTCGATTAAATACTAAATTAAA 95383 29 100.0 35 ............................. GAAGATGAAATTGTTATTGTTTCAGGCAAAGCTAG 95447 29 100.0 36 ............................. CCGCTAATTAATTTATTACTTTCTAGTTTATTTTTT 95512 29 100.0 36 ............................. AAAGTCAAGGTTTATCCGAAAACTTTTTGCTTGGTA 95577 29 100.0 36 ............................. TGTAGTCTATTCATTAAATCTATATTATATGTATTC 95642 29 100.0 37 ............................. TATGTTTCAGCCATACCGTCTAATCATCTCCTTTCTG 95708 29 93.1 36 .........G......A............ ATACATTGTTTTGTCTATATTTTGAAGTTGTTCTTT 95773 29 86.2 0 .........G......A......TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 97.4 36 GTATTAATTAAACTATGTTAGTTATAAAG # Left flank : ATTATACGATGTAATTACATATACAGATAGTTTAGAAACAATAGAAAAATGTAAGGATGAAATTTTAGGATATGAAATAGCAAGTATTGATGATCTTAATAGTAGCGAAGTATTTGATGATACTTTTGGAGTTGATACACTAAGAGTCAAAGAGGGAATTGTTACATATAAGAGGCATTTAGTTGGATATGATGGCTGGGATATTGAAGATTATTTAGAAGTTGGTAAGTGGGAGTTAGTTTAGATAAATTAATAGATTTAGGATTAACTATACCTCATTTTGAGAGTGCTTAAAGGTAAAAACAAATAGAGATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAATAGTGTTATAACATAGATATATCAATACGTCTAGCTATTTACTATAAAAAATGGTTCACTGCAAAATCATACTATTTATTTGAATTTTTATGGTCAAAATATGGGATGATATAGTATAATAGAGATATGAAAAGAAAAATAGG # Right flank : GAGGACTAACCTTTTAAGGTTAATCCTCTTTTTAAATAAAAAATCATAAATATCAATAACTGTGGTAATTAGTGAAGAATTATTATATAATAGCATTAAAAGGTAAATTTTATTTATAACTGATTGGAGATGAAAACATGAAAGGTAAAAAAACAACAATAGCTATAATTGTTGCGAGTTTGTGTTTGATAATAGGGGGAGTTTATTTTAATAAAAATTATAGATTTACTTGCTTTGATTCAAAACAAACATATAAAAAAGAATCTATACAAGATCTGAATAGATATTTATTAGATGCTGTAATATCAAGAGATTCAAAATTGTGTGAAAAGTTTTTAACAAGAGGAGCAAATCCTAATATTCCATTATCAGATGGAGATAATATATTTTATAAAGCTTTATTGGGTGGAGATGAAGAAATATGTGAATGTTTAGTAAAACATGGTGCAGATGCTACTACCATACACCCTCATCCTAAAACTATATATGATAACAAAACT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 42943-42057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYJ010000009.1 Clostridium botulinum C strain IZSVe-TV_7573_4_12 NODE_9_length_108012_cov_64.6333_ID_3259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 42942 30 100.0 36 .............................. ATATCTTTATATGTTCGATGGACAAATACGTAAATA 42876 30 100.0 37 .............................. ATCTATAGTTAATGCTTTGGAATTAGATACTCTTAAA 42809 30 100.0 34 .............................. GGTATGCATAGCGAAATAGACGACGAAGATTTCG 42745 30 100.0 35 .............................. CTGAGGAATAAGTAGAAATAATATAACACGTTTAC 42680 30 100.0 35 .............................. TAAGAAAAGGAATGATATAAATGAAAACAAAAAAT 42615 30 100.0 36 .............................. TTAATTTTTCGTATATTCCCATTTAAATCCCCCCTA 42549 30 100.0 38 .............................. GTTAAGACCTAAAAATTATGAAGCTCCAGTTAAAATTA 42481 30 100.0 36 .............................. TGACCACATGAAAACGTACCACTATAACCTGCCATT 42415 30 100.0 36 .............................. AAAATAGAAGATAAAAAGAAAGAAATAGAAGCATTA 42349 30 100.0 36 .............................. TCGATTGTTAGATCACCTTCAACTAATTCTCCACCA 42283 30 100.0 36 .............................. TTGTTACATATTACTTTAAATTCATGTTTATCAAGC 42217 30 100.0 35 .............................. TAAAAATGATTAATTATTAAACCACCTCCAAGCGT 42152 30 100.0 36 .............................. TCGACTGTTTTAATTCTTTGAGTTTCTGCGTTCTTG 42086 30 90.0 0 ....................C...C.T... | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.3 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : ATAAATAATGAGCCTTGGACTGATAAAATGAATATAGATTTATTAAAAAAGAGTATCAATGAGAATTTAATAAAGAAGATAAAAGTTATTCAGGATATAGACGAAACTTTAGAGCTTGATATGATAAAATGTATAAAATTAAAAAATAGAATGCCTATAGGGTGTAAATATAAACATATTAAATTATTAGGAAATAAATTTGAAATAGAAATTAAAGATGATGATATATCGCAATTTATGGCAAATATAGCTTTAGCAGTAGGGATTTTAGAAAAAAATTCTCTTGGTTATGGTTATTGTTTATATAAAAGTAAGTAAATTATTTTCCCAACCGATTAAAAAATTTAAACTAGTCATAATCCTTGATTTTACTGTTTTTGAGTGGAATTTAAGTTTAGAGAATTAAATTATTAAGAACGGTTGGGAAAAAAATAACGAAAGTATTTATTTTTAATAATTTTAGGGGTATAATAAAAATAAGAAATGGTTATTTTCCTATG # Right flank : AAAAATTAGTTAAATACTAATACAACAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGAAGTAATTAAATTTATATCGTGTTCTTCAAAAAACTTAACATACTCTTTAGGTGGAATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCTGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTTTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCCTCCTGTGGATAATATATCTACATTTGAATAAGGCAAAGCCTTTAGTAATATATTAAGATTGTTAGTTATTATAGTTAAATTTTTTCTATCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //