Array 1 164122-165485 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824764.1 Lactobacillus sp. HMSC25A02 Scaffold383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 164122 36 100.0 30 .................................... CCTAGTGGGTTTTCTAACTTGAATGCCTAG 164188 36 100.0 30 .................................... TCCAGCCCGTGAAGTCGCCCGATAAATTCT 164254 36 83.3 8 ..............................NNNNNN NNNNNNNN Deletion [164298] 164298 36 83.3 30 NNNNNN.............................. TGCAGAATTTAACGCCTACGTTAAATCACT 164364 36 100.0 30 .................................... CAACAAAGTTGTATGGTGAAGGCGTTCACA 164430 36 100.0 30 .................................... CACAAAGGTTGCAACTGCAAAACGTATCAC 164496 36 100.0 30 .................................... CCTTGCAAGTCTTTTCAGATGGCGCCTATG 164562 36 100.0 30 .................................... TGCAAACCGGCCGTGGCCGGTGAAGCCATT 164628 36 88.9 12 ................................NNNN NNNNNNNNNNNN Deletion [164676] 164676 36 88.9 30 NNNN................................ GGTTGACGCGCTGAAACAATCATGTTATAC 164742 36 100.0 30 .................................... AAAGAGAAGCGTTCGCGAGATTTTGGTAAC 164808 36 100.0 30 .................................... AATTATGGAAACTAATGTGAAGCATACAAC 164874 36 100.0 30 .................................... CTGCCGGCGTGTATCGTTTGTAGAGTTCGG 164940 36 100.0 30 .................................... GACCACAATACATTGTTATGCCATAGTAAG 165006 36 100.0 30 .................................... TTTTTCCGGCGCGGCGCGTTGCCTTATGGC 165072 36 88.9 12 ................................NNNN NNNNNNNNNNNN Deletion [165120] 165120 36 88.9 30 NNNN................................ ATCTATATGGACTGAACGGAGCACCTTTCA 165186 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 165252 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 165318 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 165384 36 100.0 30 .................................... ATGGTTGCATTAAACTGGAGGTGTTTCACG 165450 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 96.3 27 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : CTGGCGAAGAGCAATATCGTGCATTTCAGCGGTCTCAGGTAGATGTCGAATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCACGGGGGTGTACATGCCGACTCTGATGCTAGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCGCTGAAGTATCTTGGCAGGAGGCATGGCTAGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCAAGGACGGGCAGAGTTAGGAAAGAAGCCATGTCTCAGGTAGATGTCGAATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCGAATCAATCAGTTCAAGAGCAGGGGATTTAATTGGGCATGTGGTCACTCGGTCTCAGGTAGATGTCGAATCAATCAGTTCGAGAGCTGATTCGGTGAAAGTAGGTGCTCGCCTTGTGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCTCTTCC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 749-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824782.1 Lactobacillus sp. HMSC25A02 Scaffold630, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 748 28 100.0 33 ............................ CAATCAATTCGCCAACCGTTAATTCGCCATTCA 687 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 626 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 565 28 100.0 33 ............................ TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 504 28 100.0 33 ............................ TGCGATTCACGAAGATTTTTATTTTGAATAGCA 443 28 100.0 33 ............................ TAACTTTCGTCCTATTTCTGTTCCTTCAGTCAA 382 28 100.0 33 ............................ TGAGCTTGTTAAGGACGACCCAGTTACCATCAA 321 28 100.0 33 ............................ CAATCTGGTTAACTACACCATCTTGATTGATAT 260 28 100.0 33 ............................ CTCAGGCAAGTTATCTGGCAAAAATCCAGATCG 199 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 138 28 100.0 33 ............................ CAAGCGAGAGAGGGCGAAACAGTGGCAAGAACG 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : CGTC # Right flank : CTTTATGAGTATCAGCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6-1803 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824786.1 Lactobacillus sp. HMSC25A02 Scaffold674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 67 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 128 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 189 28 100.0 33 ............................ CAAGCCATGAAAAAAGCCGCTGGCCCGCATGCC 250 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 311 28 100.0 34 ............................ CCTCTGCCCAGTCACCAATCGTGTATCCAAAAAA 373 28 100.0 33 ............................ TGATCTTCGCAACCGTGAAGGGATTTCAATCAG 434 28 100.0 33 ............................ CATTAGACGCCGGAACAGGCTGTGAATTTGTTG 495 28 100.0 33 ............................ CGCGTTGGGATTGATCCATGGGAGCTTATTCGG 556 28 100.0 33 ............................ TACGCTTGCTGGTATGGCTCACCAGCAGGAGTA 617 28 100.0 33 ............................ TAATGCTAGTGTGGTTCTCGTAAAGACCATCTG 678 28 100.0 33 ............................ TGGATTGAGCTGTACAAATCTGGTAAGCATTCT 739 28 100.0 33 ............................ CAAGATAACGTTAATCGACTACTGGGACAAATG 800 28 100.0 33 ............................ TGCCGATTTGCAAACGATCGAGCGGTTCTCCAA 861 28 100.0 33 ............................ CCGTGGTTCCCAAGCTTTTTTGTTTGCCATTTT 922 28 100.0 33 ............................ TCAAAGCCCACATTAACAAGGTTGCCATGACGA 983 28 100.0 33 ............................ CAACAACCAACCTTGCCAAACTTGAAAAGCAGG 1044 28 100.0 33 ............................ TTGCGCCCATGTCTTTGCAAGTTTTGTCATAGC 1105 28 100.0 33 ............................ TGGTTGTTGACCAGCCTGTGCTTGGCTTAGTGA 1166 28 100.0 33 ............................ TAAGATTGTGACGTCCGGCAGTATTTATGATCT 1227 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 1288 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 1349 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 1410 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 1471 28 100.0 33 ............................ CATCATCGGCAAGCTTGCTGACAAGAACGAAGA 1532 28 100.0 33 ............................ TGCCTTTTTACGGTTCAATGCGGCCATAGAGCG 1593 28 100.0 33 ............................ CGGTCCCGCTAAGTTTACGTTCGACAAATGGCG 1654 28 100.0 33 ............................ CATCTCTTCGAACCCCAAATACAGCGTCATTAC 1715 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 1776 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 30 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GTTGGG # Right flank : CCATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9659-11334 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824784.1 Lactobacillus sp. HMSC25A02 Scaffold656, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9659 28 100.0 33 ............................ TCAACACCAATAGACAAATTGAACCGTTTCATA 9720 28 100.0 33 ............................ CTCTATGCGATGAGTGCGAAAGGGCAACTTACG 9781 28 100.0 33 ............................ CCTGTCGTTTTCATCTTGCAATTCCTCGTTTCT 9842 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 9903 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 9964 28 100.0 33 ............................ CCCAACTAACAGAGACTTTTTCATAGTGAATTC 10025 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 10086 28 100.0 33 ............................ TCAGTCCTTCGTCCAGAATGTCCTGAATCACGC 10147 28 100.0 33 ............................ TGACCATTATTTCATCTGGCCCCCACATTACTC 10208 28 100.0 33 ............................ TACCAACCACTTTTAGAATGCTGACAGCCCCCA 10269 28 100.0 33 ............................ TACCTGCGATATAAGGCGCGTATGCCATGAGGT 10330 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 10391 28 100.0 33 ............................ CGTCATTGTGAGAATGCTGGCGTTCCCATTATA 10452 28 100.0 33 ............................ CTTTAAAAACTAAGGAGAAAAATCATGAATAAA 10513 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 10574 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 10635 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 10696 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 10757 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 10818 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 10879 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 10940 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 11001 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 11062 28 100.0 33 ............................ TTGACCAACCACGTTGATCCGAAAACCCAGGGA 11123 28 100.0 33 ............................ CTGGTTCAGATGGATAGGTCCCAGCATTAGGCA 11184 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 11245 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 11307 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 28 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //