Array 1 77783-79732 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFWI01000065.1 Vibrio parahaemolyticus strain RM-17-6 contig65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77783 28 100.0 32 ............................ TCTGTGAACGTACCGGACTTCATCTCTGGACG 77843 28 100.0 32 ............................ AAACAATCAAACTACGCCCGATTCGTAGTGCG 77903 28 100.0 32 ............................ ACTCAGTAATCAATTTAGCAGATGCTTCTACA 77963 28 100.0 32 ............................ TCTATGAGTAAGTTGGATTTAGAAAAGATGAA 78023 28 100.0 32 ............................ AACAAGCGCAACAGTCCACATGATGCCATGCT 78083 28 100.0 32 ............................ ACGCTCAGGAGGAAGAGGGGTAGTCCAAATAG 78143 28 100.0 32 ............................ AGCAACAGGTGCAATATAAACATCCTCACCAC 78203 28 100.0 33 ............................ AGGAAGTGAGCGCGGTTATCGAAAACTATATGA 78264 28 100.0 32 ............................ TATAATTTCACCGCTCATCAACTTCAAATCAT 78324 28 100.0 32 ............................ AACCGGATAACGCGGAATCTATAAGCGTGGCT 78384 28 100.0 32 ............................ CTGGCGCGCTACGTTGGCCGTATCGCTTATTA 78444 28 100.0 32 ............................ CTTTGTGCAATCGTCCCGGCTTGCTCCATGCG 78504 28 100.0 32 ............................ GTCGGGTCGGATCGTAGCGCGAACACCTCCGA 78564 28 100.0 32 ............................ GCCAACAACTGAATCGCCATCTTTGGCCGTTA 78624 28 100.0 32 ............................ AATTAAAGCTGACGAAGATGATCTATTTCCTA 78684 28 100.0 32 ............................ ATCAGTATAAGTAACTGTAGCAGTCAGCTTTC 78744 28 100.0 32 ............................ ATCCTTGGCCTCTGCCTATGAAAAGGCCAAAA 78804 28 100.0 32 ............................ AAGCTGGCGAGGCGCTTTGAAGTTCACGGAAA 78864 28 100.0 32 ............................ TCAGTCAGCGACTGAACTTGCGTCATTAACTC 78924 28 100.0 32 ............................ GCTAAATTCACTTTGTCCGGTCTCTTTACTCA 78984 28 100.0 32 ............................ AAAAACGCATTGCACAAACTGAGGATTGGCCG 79044 28 100.0 33 ............................ TAACTGCATGTTAGTCATGAGCGTTTGAATGCT 79105 28 100.0 32 ............................ CTTTGGTTATCAGGAGCGCTACGCAGAGTATC 79165 28 100.0 32 ............................ TTCGCATCAGCAATCTTTTTAGCTTTAGCTTT 79225 28 100.0 32 ............................ GCGCCAGAGCATCCATGCCCTGATTGCGGAAA 79285 28 100.0 32 ............................ GAGCTAGCTCGTCGCCTTGTCGAAGACCTTGA 79345 28 100.0 32 ............................ GTCTACGGTTGGGAAGACGGCTCGTTTGCGAA 79405 28 100.0 32 ............................ ACATCATCGAGCAAGCACTAAAGCCAGCTAAT 79465 28 100.0 32 ............................ ATCACTACCCATCATTTTATTGATCTGTTCTT 79525 28 100.0 32 ............................ GAGCATCTCTGTGTTCTCAGATACATCGACGC 79585 28 100.0 32 ............................ GCGCCAAACTCATACAAGGACGCAGAATATAA 79645 28 100.0 32 ............................ ACACCCTGAACCAAACCGCTACTGATGATGAA 79705 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAACTGGAAAAGACTAAGCCTACCTCGCTCTGTTTATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCGCCTGATAAGAGCAGTAGATTTCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCATTTCGATTGTTATGGACTGAATGCCAAACTCAATCAACAAGACGGTCTTGGGACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGTTATAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTGAAATTTATATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCCTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTATGAAAATCCATAATTATAATTGTTCATATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATCGCTTGGAAGTAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //