Array 1 992-4745 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFH01000008.1 Mycolicibacterium phlei strain RIVM700384 contig7_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 992 29 96.6 32 ............................T CGCAATCGTCGCCCACATCAGCCGCCTCGACC 1053 29 100.0 32 ............................. AACTCGGACCCGAAGTACTCGAGACATCCGGC 1114 29 96.6 32 ............................T GGGCGACTGTTGCCGCTGCCAGCGTCGGCGCA 1175 29 96.6 32 ............................C ACCACCGGCTTCGGGCGCGGCGCGGCGATGCC 1236 29 96.6 32 ............................T TGCATTCCAGTGGTGCTGGTGTCGCTGCGCCG 1297 29 100.0 32 ............................. AACAGCTCCGGATCGACCTGGGCGCACAGTGC 1358 29 96.6 32 ............................T TTTCAATCCGCACACACAAGAGAGGGGTATCC 1419 29 96.6 32 ............................T CGAGCAGTAGCCGCCGGTACGCCGACACCGGC 1480 29 96.6 32 ............................T CCAAATCGTTGGCGCCGAGCGCGACGATGATC 1541 29 100.0 32 ............................. CGGTCCTTGAGGTTGATGGCCGCCTTCGGCAT 1602 29 96.6 32 ............................C AGGCCATCGACACCATCGGTGTGCCGATGATG 1663 29 96.6 32 ............................C GCAACCCGCATCGGCCGGGTTTCGTGGGCGGG 1724 29 100.0 32 ............................. GCGACAGGCATGATGCGTTACGAAGCCAGGGG 1785 29 96.6 32 ............................C AGCGGCATACCGGCGGAGAAGCTGATGTAGTC 1846 29 100.0 32 ............................. CGAAATCGGCTGCCTCAGACTCATTTCCGGTG 1907 29 100.0 32 ............................. TGCGCCACCTGGCGCGCCAAGTGAGAGTTAGG 1968 29 100.0 32 ............................. AAAAGCGACATAGCAACGCTCCATTTGTCGTA 2029 29 96.6 32 ............................C GAAGCATCACGGAGCGCCTCAGGCGCAGATGT 2090 29 100.0 32 ............................. CGCTCACGGAACGGGCCAGAGCTGACATCTAC 2151 29 100.0 32 ............................. TAGTCCCACGGGAACCCCGGCCCGACATCGGT 2212 29 100.0 32 ............................. AAGTCGCCTGCCTGCGGGGCGTACGAACTCCA 2273 29 96.6 32 ............................T GGCACCCGTCCTGGGGACTTCTCTTGGAGAGC 2334 29 100.0 32 ............................. GAGATCGCCCGGCTCAAGAGAGGGCTGGTGAA 2395 29 100.0 32 ............................. AGGTTTGGTGTCCCGAACCTTGGAGACATCAC 2456 29 96.6 32 ............................C TCAAGCTTCTGCCGACGCCAGAGGCCAAGTCC 2517 29 100.0 33 ............................. CCCGCCAGCGGGCCGGAGTTCACCGAGGCCCAG 2579 29 100.0 32 ............................. CTCGCATCGTCCGGCGTCGGGTCGTCGGGCTC 2640 29 100.0 32 ............................. CGCGGCTCAGCGACGTAGTGGCGCAACCAGGC 2701 29 96.6 32 ............................T CCAGCCACACCCCGTGACGCTGGTAGATCAGG 2762 29 100.0 32 ............................. GATCCGTCCTCCTGCTCGACCGCGTGCTCCAG 2823 29 96.6 32 ............................T CTCCCCGCGGGCCTTGGCGCCGATGTACTCCA 2884 29 96.6 32 ............................C AAGCCCATCGGCGAGTCGATCCAGTCGCCGGA 2945 29 100.0 32 ............................. TTGAGCAGGTGTAGTGCGACCGCAGTAACGGT 3006 29 100.0 33 ............................. TCGTACTCGCCGCCATCGGGGACGGCTGCGGGC 3068 29 100.0 32 ............................. TCGACCAACAAGGGGCGCGGCAAGGTCGAGGC 3129 29 100.0 32 ............................. GAGTCGACGTGCCAGAGACGGCAACCCTTGTG 3190 29 100.0 32 ............................. ATCACGTAGTCGCCGGATGACGCTGCCGCGAG 3251 29 96.6 32 ............................C ATGGCCAACCGCCGCGCCAGCCAGGTCGTCGC 3312 29 100.0 32 ............................. TATCCGTTTCGAGAAGAGTGGCGGGGTGGATC 3373 29 96.6 32 ............................A TCCCAGGTGTCGGTGGTGCTGGCCCTGCCCAA 3434 29 100.0 32 ............................. TTCTGACCTCAGCCCGATCTCAGCCCCCCCGA 3495 29 100.0 32 ............................. CGAGAGATGAAGCGGCCTGGCAAGGGCAACCG 3556 29 96.6 32 ............................C TCTGGAAGATGTTGAGGCAGACGTGATTCGGA 3617 29 100.0 32 ............................. CTACTGCGGCGCACACGAATGGCACGTTGGCA 3678 28 96.6 32 ........-.................... TCAAACTGATCGCCCACACGGTCACCAACCCC 3738 29 100.0 32 ............................. GAACAGCGTCACGCAACTCAGCGGGGCATACG 3799 29 96.6 32 ............................T TGCAAGGGCTGCGGATGACGCACGGCTGCGGC 3860 29 96.6 32 ............................C CGTGACCCCGAACAGCTCGAGCAGCTCGTAGC 3921 29 100.0 32 ............................. CAGCAGCCTCACCCTCCAGCACATCAATCAGC 3982 29 96.6 32 ............................C AAGGCCGCCCTGCTGGCGCTGACCACCGCCCA 4043 29 100.0 32 ............................. AAGTCGGTAAGGCCGTCGTGCGGGCGGAGTCA 4104 29 100.0 32 ............................. GGCGCCGCCGGGCGCAAACCGCCAGGAAACGG 4165 29 96.6 33 ............................A AGGAGCCGCCGTTCCTCGTCACGCCCGTGCGCT 4227 29 100.0 32 ............................. TGCACGCTGCGCCCCGGCAGCGGCCGGCTCGG 4288 29 100.0 32 ............................. TTGCCGCCCGGCGCGATCCACCAGTCGGCGGC 4349 29 100.0 33 ............................. TCGACGTCGGCCAGGCGCTCGGCCGCGGCCCAC 4411 29 96.6 32 ............................T CCGACCGAACTCGCACCATCGGCCGAGCCGAC 4472 29 96.6 32 ............................T TCGCGATAGCGAATCTCAAGCACCTTGTCTCC 4533 29 100.0 34 ............................. GAGGAGCGCACCGTGGTCGAGAACCCGCTGGATC 4596 29 96.6 31 .........................G... CTCGACCTCCCAGCCCGAAGGACCGTCTTTG 4656 29 96.6 32 ............................C GGGATGGAGTGCCGGTACTGCGGGATGACGGC 4717 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 62 29 98.5 32 GTGCTCCCCGCGCAGGCGGGGATGATCCG # Left flank : CTCATACGAGGTTGAGTTTTGACCGTTGTTGTGCTCACCGCGGTTCCGAGCGGACTGCGAGGTCATCTGACACGGTGGTTGCTCGAAATCGCCCCCGGGGTCTTCGTCGGACATATTTCTGCACGCGTTCGAGAACTCATGTGGCAGAGAGTGACTCAGTACGCCGGCACCGGGCGTGCCTTGATGGTGTACACGGCGCGAAACGAGCAACGACTGGCTTTCCAGGTTCATGGGCACGACTGGGAACCAGTCGACTATGAAGGGCTACGTTTGATCCGCCGACCCACAGGGCAGGGTGCGGAGAAAGCATGGTCGGTGGGCAGCGAGACTAAAGAGGCTTAGTCGTCCGGTGGCCAACACAAAGATGTGATCTGATGTCGCAGACGGAGCGAGCATGCTGCGCCGAAGACCAAACCCGAACTCAGAGGACCGGCAATGCGCCCCAACCTAAACTAATGCAACTCCGGGTGGCACCGAGATAAACATGCAGGTTACGAAGT # Right flank : GTGGGCCAGGCTGGTGTTGGGGGTGTTGGTGCGTGCGCCAACCCTGATCCGACATGTAACTGAAACTCTTACAGTATCGTAATCGGCGTGGCCCCGGTGATCGAGCACAAGCCCACGTTCTGCCGGATCTGCGAGCCCCTGTGCGGGATGATCGCAACCGTCGAGGACGGTCGGCTGACGGCGCTGAGGCCCGACAAACAGCACCCGCTGTCGGCGGGTTTCGCCTGCCAGAAGGGCATCGCGTTCACCGAGATCGTCAACGACCCGGACCGGGTGACCCGGCCGCTGCGCCGCGGCCCCGCGGGCTTCGAGGAGGTGAGCTGGGACGAGGCGCTCGACGAGATCGCCGCGCGGCTCTCCGACATCCTGCGCCGCCACGGCTCCGGCGCGGTCGGCTGGTACATGGGCAACCCGGGGGCGTTCAGCTACGCGCACACCTTCGCCGCGCTGCTGTTCATGAAGGGGCTGGGCCGCCACGGCCACTACTTCACCGCGTCGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //