Array 1 1550-1322 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALZD01000041.1 Streptococcus mutans str. B16 P Sm1 contig_304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1549 32 100.0 34 ................................ TTGGATGATCCGTAATGAAAAAGGAAATGAGAGA 1483 32 100.0 33 ................................ ACTGAAAAAGAATTACCAAGCAGTAATCATTGA 1418 32 100.0 33 ................................ TTTATGAACAAATCTACTTACGCAGAGCTTGTA 1353 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGACAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGTTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGGAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAAC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25575-23361 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALZD01000057.1 Streptococcus mutans str. B16 P Sm1 contig_321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25574 36 100.0 30 .................................... ACTCGAAGGCAATTATATATATCCGTTTTC 25508 36 100.0 30 .................................... CTTACCATCTCACAGAATGCACAAGACTTT 25442 36 100.0 30 .................................... GCAATCTAATGCTGAGCAAGTGCAAGAACG 25376 36 100.0 30 .................................... GTTCTTGCTAACGCTTATCAGTTGCTTTAC 25310 36 100.0 30 .................................... GAAGTCTACTGCTTATATAGCAAGTCTAGC 25244 36 100.0 30 .................................... AAATAAACTTTACCATTCGGCAAGATGGCT 25178 36 100.0 30 .................................... GTGCTCGTTGTCTCCGACGGCAACCGTTCG 25112 36 100.0 30 .................................... GACATTTCAGAAGGAATCTATGCTACATTA 25046 36 100.0 30 .................................... CGGTTTTGTTGGTGGTGCTCTAAAAGGTGT 24980 36 100.0 30 .................................... CTCAAAAGTTCCCGCTGTGTCTAAAGTCGT 24914 36 100.0 30 .................................... AGAAAAGAGGAATTAATACATGGCAACTGT 24848 36 100.0 30 .................................... CCAGCCAACATTCGACGCTTACGCGCATAG 24782 36 100.0 30 .................................... TGGCAAACGACTGTACAGCAGGATTTTTAA 24716 36 100.0 30 .................................... GCTAAAAGGTGCTGTATTACTAGTTAGCTC 24650 36 100.0 30 .................................... TTAGCGACGCTCTGGCACAGTACAGCACTA 24584 36 100.0 30 .................................... CACAAATGAATAATGTGCAAAGAAAACGCT 24518 36 100.0 30 .................................... TGCGCTAGATGGTTTTAATAAAAAGGGCCT 24452 36 100.0 30 .................................... AGTATCTAGCGACCCAATCGCAACTGTGCA 24386 36 100.0 30 .................................... CGATTGAACGTATTGATGGTAATAACATGG 24320 36 100.0 30 .................................... GAGAGGAAAATAGAAACGTTTAAAGAGGGA 24254 36 100.0 30 .................................... TAACGTCTTTTACAATATTATAAAACGCTG 24188 36 100.0 30 .................................... GTATAGCTCTGATGTTAAAAAAATAGAATA 24122 36 100.0 30 .................................... GAGGTACAAAAACAATGATTGCAACAAATA 24056 36 100.0 30 .................................... GTTACATCTGAGAGATATTGAACAGGGGCA 23990 36 100.0 30 .................................... CTCTTTCTATAATTGTAAATCGATAGGTTC 23924 36 100.0 30 .................................... ATCCTTTATCAAAACTTGGTAAGAAATTTA 23858 36 100.0 30 .................................... CTGGGTCGAACAACGTGTCAAAGAATGCTT 23792 36 100.0 30 .................................... GCTTTACACGCGCTTAGCGGCCGAGGGTCG 23726 36 100.0 30 .................................... AATCATTGACCCTATTTATAAAGTTTTAAC 23660 36 100.0 30 .................................... ATTTCTCACTCCAAAGATGGTCTACAGTTT 23594 36 100.0 30 .................................... AGTGTTGAGATTGACTTTTATAGTTATCGA 23528 36 100.0 30 .................................... TAGGGATAAAAACGGAAAAGAAATTTTCGA 23462 36 100.0 30 .................................... GTCACGAGCTACTCTGTCTAAATAGTTTGG 23396 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTGTTGGCATCTTATCTTGATGAAGGGTTGGTTCTACCCATTTCAAGCGATATTCAGAAAATATCTGTTGAAGATGGTTTTGCGACCATGATTCAAGCTGATCCTAGTCCTTATCTCAAAAATAACAAAGCTATTCGGAAAAATGTTACCGTGCCTGAGTGGTTGATACGATTAGCAGACCGTGACCGAGTAAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTTAGGTATAATATAAGCAATCAAAACCTTTTAAAAAAGAATCATTTTGAAGCTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATGTCGAGACAAAAATTGGTCCACGAG # Right flank : ATGTGAAAAGAAAGTAACTACTACATTTGAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //