Array 1 43268-47075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAO010000001.1 Shewanella algae strain LC2016-5 scaffold32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43268 28 100.0 32 ............................ TTTTCCCCCTTTCCCCTCTTCCTCCCTCTCCC 43328 28 100.0 32 ............................ TTGCTGGTTATGATGTGCAAGTTTACGGTGAT 43388 28 100.0 32 ............................ AGCATATCAGCCTCCGAATATTATGGCGCGAC 43448 28 100.0 32 ............................ AACGAAAGTGGCAACAGTCGAAAGGTCCACAG 43508 28 100.0 32 ............................ CATTAGCGATATTAGCGATTCAACGCAAACTG 43568 28 100.0 32 ............................ GAAACGAAAGGGGTGTTTACCGACCTGACAGC 43628 28 100.0 32 ............................ GCTACCAGCTTCATCGACGTCTTAGGTGTTTC 43688 28 100.0 32 ............................ GCCCAGCTCGGCGCCTTACAGTGTGGGCAGGC 43748 28 100.0 32 ............................ ATAACCATCAGGTTCCCACCCTGAGTCACCGA 43808 28 100.0 32 ............................ GAAACCGTCTGAAACCGTAACGGCCAGACCCA 43868 28 100.0 32 ............................ AATGACTGAATTGATTCTTGGTTGTGCGATTG 43928 28 100.0 32 ............................ TCCTTAGATTGATTTAACAACGTTGCGAGCGA 43988 28 100.0 32 ............................ TGCATTCAATACAGCAGCAGTCTCTCCCAGTT 44048 28 100.0 32 ............................ TTACGGCGTCTGAGCAAAACGATGATGAATTG 44108 28 100.0 32 ............................ GGTACTCAGGTTGATAATGTCAAAGATTTTAA 44168 28 100.0 32 ............................ AAACTCGCTCCCTACGGCCATTTTCTCCACCC 44228 28 100.0 32 ............................ ATGAACGGACGGAAACAAGATTTTGCAGTTCA 44288 28 100.0 32 ............................ TCAATCATTTGTTTTTGTATCTCTTCCATTCT 44348 28 100.0 32 ............................ ATTAACTTACGACGTTCTTCGTCTTTTTTGTA 44408 28 100.0 32 ............................ TCCTCAGAGCGCACAGCTTCAAGTTGGCCAGC 44468 28 100.0 32 ............................ TGCCGCAATGGTATCCGGACTTTGAGGGCACA 44528 28 100.0 32 ............................ AGTAAGGCCGTGATCCTTCACCAGCTCGGCCA 44588 28 100.0 32 ............................ TAAGTGAAGGAGTTCAAACAATGAAAATGCCA 44648 28 100.0 32 ............................ AGGCGGAAAAGTCGTCAGCAGTAAGATGGCTG 44708 28 100.0 32 ............................ TGTATCGGGTGACGCTATCGAATGCGCCATCC 44768 28 100.0 32 ............................ GGTTATGTTGACGACTGGATCCCAAGCTACGA 44828 28 100.0 32 ............................ ATGGCAGACAGCACAGTGATCACGGACTGATC 44888 28 100.0 32 ............................ TATAGTCCCCATTGATGCGCCATATAACGTTT 44948 28 100.0 32 ............................ TGACGATGGACCGGAGGCAGCATGAGCCACAA 45008 28 100.0 32 ............................ TGATATAGGCCCGGCTCCGGGCGTTTCTCGGG 45068 28 100.0 32 ............................ AGCGAGCCGAAACAATACTAAGGGCGGTTCTC 45128 28 100.0 32 ............................ CCAGTTGACCGGCGTCTTTCATGGCGTTGATT 45188 28 100.0 32 ............................ AATCTAGTACAGGCTTCCAGTCTGCATCACTG 45248 28 100.0 32 ............................ TGTTGGGTGCGAGTGCCTGTTAAAGTCAGGAA 45308 28 100.0 32 ............................ CACTGGAACGGGTAAGGCGTGATATTGCCTAG 45368 28 100.0 32 ............................ TGTGAGCTTCTCGTTAGGGTCAATCAGATACT 45428 28 100.0 32 ............................ GATTGGGTCGGTAAAAAATGATAGGGGTTATT 45488 28 100.0 32 ............................ TGTTAACCAGGTCGCGGCGGCAGCGAAGGCGC 45548 28 100.0 32 ............................ ATTGGGGCCAGGATGGTCACGCTTTTTCTATG 45608 28 100.0 32 ............................ TGCACAGTATCGATACGGCGAAAAGGAAGAAA 45668 28 100.0 32 ............................ TCTGTAGAGTTTAAAGTCTACCCTGGCGGCCC 45728 28 100.0 32 ............................ TATAAGCGCGGCTGAGCCGAAACTGAACGTTG 45788 28 100.0 32 ............................ ATACGGTTTCTTCGGGTTCACCACTTTGGCCC 45848 28 100.0 32 ............................ TAAAGTATCCAATCCGACCAAGCAGGAAGCCA 45908 28 100.0 32 ............................ TGTTGGAGATTTGGGGCTAACTGGACGCATCC 45968 28 100.0 32 ............................ GTAACGGAAGCGCCAAAAACTGAACCCGTAAC 46028 28 100.0 32 ............................ CATCGGCGAACATCCAGCATTGCTTGTTGGGC 46088 28 100.0 32 ............................ GCCGTCACATTGCAAAATTGGGGGCGGGGAAA 46148 28 100.0 32 ............................ ACTGGCGCGGGCTGAACTTTCAGCACCATGTG 46208 28 100.0 32 ............................ CAACCCCTTGTAATCCGGGTTTGGCTCAATAC 46268 28 100.0 32 ............................ TTTTTCCCAGCGTTGCCAGGTGCGAGGCTCAC 46328 28 100.0 32 ............................ TCAATAACTTTTCGACGATTGTCACTTTTAAT 46388 28 100.0 32 ............................ TACGGCCATTTTCTCCACTCGGGTCGGGTCAT 46448 28 100.0 32 ............................ TGTCCAGGGCTCCAAAGTCTGGCCCATCGTTT 46508 28 100.0 32 ............................ GCCAGAGTCTCTGATGAGTCGATGCGAAATCC 46568 28 100.0 32 ............................ AATTCTGAAGGGAACGTGCAGCACAGAGCTAA 46628 28 100.0 32 ............................ TGGCGATACCAGTGGCACAGGTCGAACCGACA 46688 28 100.0 32 ............................ AGCAGCCTGCTTCAAAATGTCAGCAGTTGTTT 46748 28 100.0 32 ............................ TGTTGGCGGTATGCCCACCGATGCGACACCTG 46808 28 100.0 32 ............................ GTTACTTATGAGCCGTCTCGGGGTCGGACCGA 46868 28 100.0 32 ............................ GACCAGGACGACGCGATCATCAAGCGTTACGA 46928 28 100.0 32 ............................ TGTATTTGCGGCGCTGGTCGCCGGACGAGATC 46988 28 100.0 32 ............................ GGGCAAGCGCATTGTCTTGACCATTCCGACCA 47048 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 64 28 100.0 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTCAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATTGAAAGATATCCGCAAAGCACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTAAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGCTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : AGTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAAGTGATCTGAATAGTGGCCCGGCTCAAGGCAGCATATCCACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCATCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACACTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //