Array 1 1289684-1287470 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594047.1 Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1289683 36 100.0 30 .................................... GATATGCCGTACAAGACAGAATATACCAGT 1289617 36 100.0 30 .................................... TACAACAACACGGTTAACGACGGGGTCACT 1289551 36 100.0 30 .................................... TTGATACCATGAACCGCTTTCCGAAAACGA 1289485 36 100.0 30 .................................... TAGGCCCTTTTAATTGCTCACGTTGCTCCT 1289419 36 100.0 30 .................................... TGGTATCACAGTGACACAGAACGCCATGAA 1289353 36 100.0 30 .................................... AAGGAAATCGGTTACGGTAAAGCCACAGGC 1289287 36 100.0 30 .................................... GATAAAATAAAAAATCTATTTAACTTCAAA 1289221 36 100.0 30 .................................... CTATCCTTTGAGCTATAAAGGTGTTTTAAC 1289155 36 100.0 30 .................................... TCAAAAAAACCTCTTGCTTATAGCTGTCGT 1289089 36 100.0 30 .................................... CACTCGAAAAGAAACGACACCAGCCATCAT 1289023 36 100.0 30 .................................... CTCCATGGAATGCCATTAGGTCAAGGCCTT 1288957 36 100.0 30 .................................... AGTCTTTTTGGCAGCGGGTTTTACCTATCT 1288891 36 100.0 30 .................................... TGCCAAAGACCGTATTGCCTTTTACTCAGC 1288825 36 100.0 30 .................................... CGTGATAGGTTGGTTTTACCCACCATATCA 1288759 36 100.0 30 .................................... ATTTTTACGTATAATCGGTAAAACAAGTTC 1288693 36 100.0 30 .................................... ACATTTTCGTGAAGAGATGTATAAAGTTAA 1288627 36 100.0 30 .................................... CTCCAAATTACTAGAAAGAACCACCTGTTA 1288561 36 100.0 30 .................................... GCTTAGGAACTTGGGGTATTGTGAATCTTA 1288495 36 100.0 30 .................................... CCAATAAATAAGCCACCAATAAGTAATGTT 1288429 36 100.0 30 .................................... TGGCTATCCAACAACTCCCGAGCGTGTCAT 1288363 36 100.0 30 .................................... CATTAGCAATAAATTTAGGGATCATGGCTG 1288297 36 100.0 30 .................................... TAAGTGTAGCGAATGTTGGTTCTTTTCTAA 1288231 36 100.0 31 .................................... TTAAGATAAGACAAATGCCCTCGCTTTTGCG 1288164 36 100.0 30 .................................... AGATAAAGTAACAAAAGTAGTCTACGAAGT 1288098 36 100.0 29 .................................... ACCAGTCTTGCCTTTTTCTCCTCGCTGAC 1288033 36 100.0 30 .................................... ATTTTTTTCTTTTGAAAGTGAAATATTTAA 1287967 36 100.0 30 .................................... CTGACAAGATTGATGTGGTTATTGATAGCC 1287901 36 100.0 30 .................................... AGTAAAACAGCTTGTTGAATCAGGGAACAT 1287835 36 100.0 30 .................................... TTTGGTCTCAATCGGTAGAGCTAGAGCCTC 1287769 36 100.0 30 .................................... CCTTAGGTTTAGCATCTGAAACATTAGGCA 1287703 36 100.0 30 .................................... AGCTAATTGATTTTAGCCTGTCAGCCATCG 1287637 36 100.0 30 .................................... TTATCCTTTGAGTTACACGGCTATTTTAAC 1287571 36 100.0 30 .................................... AATAACAAATAAGACTTTTGGACGAGGTCG 1287505 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.8 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTAAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGCGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1616710-1615877 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594047.1 Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1616709 32 100.0 34 ................................ CAATCACGGTTCATGTTCCTGAAAGAATAGTGTG 1616643 32 100.0 38 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAA 1616573 32 100.0 35 ................................ AGAGCAAGAAAAAAAGATTGAATTTGATGACCAGC 1616506 32 100.0 35 ................................ ATGGTATTATAAAAAGCCTGTGTATGTAAAACTTG 1616439 32 100.0 34 ................................ GTTTAGCTTATGAGACTATTATAGACTAGTACGC 1616373 32 100.0 34 ................................ TGAAAGTAAAGCTTACATATTTTTCGTTATTCAT 1616307 32 100.0 34 ................................ ATTTTAATATCTCCTTAATTTTTAATTGTTAAAA 1616241 32 100.0 33 ................................ GTTTTACCACTACCTCTACCTATCACACAATTA 1616176 32 100.0 34 ................................ CTTTTATCTGTAAAATCGACGAAGAGCACGAAGT 1616110 32 100.0 36 ................................ TTTATAAACCTGCCTTTCTGTTAATTCTTTATCTCT 1616042 32 100.0 36 ................................ ATTGTAATCCACTGCCTGCTCTCAACTGATTACTTG 1615974 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 1615908 32 90.6 0 ............................T.TC | ========== ====== ====== ====== ================================ ====================================== ================== 13 32 99.3 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGCCCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //