Array 1 2189210-2189357 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060416.1 Serratia sp. JUb9 strain MYb239 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2189210 28 100.0 32 ............................ TCCCATCCATCGGATACAGCTAGTTGAAATAA 2189270 28 100.0 32 ............................ AAATAGCCACCAACTACGGGTTTCCAGTCCCG 2189330 28 82.1 0 .....................C.CC.TT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTGAATTCTGCTTGGCCTACTGTATTTACTGCCCCCAGGGCTGCTCGCTGATATATTGTAAGAAGCTCATCATACCGAGGCAAACCAGTACGCCGACTATCACTATTACCGCTAATCTCATAATGCTACCTTCCGGTTGTTTAGTTATCTGTTGCATGATTTGCTCGCGGGCAGGCGCGTGAGCAAAACAAACTTATTTACCTTATGAATCATTGGCAATCCAGTATAGCCAGAACAGGCAAAGGTTGGGAGCAGGGAGGTAAAACGGTGAGACAACGGACGTAAAACAGGACTGATATCTATAACCAGCGTGTCGCTGTCTGTTTGTGCCAAGTCGTTAGGAAACTGCTTTACGAGCCGGAGGCACGCAGACCCTTTTTTTACACCTCCGATAACTTATTGATATGCAATTGGTTTTCTGGGCGGTGAAAAATAACCTTTTTGTGCGCCATCGCCGGCAGTGCTTTTAAAAACAACGGGCTAGTGCTAATCTGCAACA # Right flank : TTCCTTATCGCTATTTTCATTCATCAGGCCGATGGCAGACCATTTCAATATTATGGCCGTCCGGCGCAATCACAAAGGCGGCGTAGTAATTGGCGTGATAATTGGGGCGCAGGCCCGGTGCGCCGTTATCTGTACCGCCGGCCGTCAGCGCCGCGCGGTAGAAATCATCCACCTGCCGACGGCTGTCGGCGACAAACGCCAGGTGTAGGTGCGCCGGCCGTTCTGCGGTTTGGTACAGACACAGTGATGCGTTGCTGGGAGAACTTAACTCTACGCCGTAGTCCGGCGTTCCTTCAGCAACCACGCTTACACCCAATGGCGCCAATGCGTTGAGAAAGAAGGTCTTGCTGGCGGCATAGTCGCTAACGCCGAATTTAACGTGGTCAAACATAAGTTCCCCTAAAAGTGGGCAGTGCGTGCCACTCCAGTATAGCCACACCGGCGGTGTGCGTGCCGCCATGCTGTGACTTTTCTTATTCATCCAGCGTGTTTTTGACGGG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2999350-2998722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060416.1 Serratia sp. JUb9 strain MYb239 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2999349 28 100.0 32 ............................ CTGAAGGAGTACCGGTGTGCAACAGAACTCAA 2999289 28 100.0 32 ............................ TTCACCCACACATACCGCCCGCGTGCCCGGCA 2999229 28 100.0 32 ............................ GATGGAAGGGCGGGATGCTCGAGACAATGAGC 2999169 28 100.0 32 ............................ ACCGGCGCGCCGTCCATCTACGTGATTAACAG 2999109 28 100.0 32 ............................ GCAGAACTAAACCGGCTCAAACAGCAGCAGGC 2999049 28 100.0 32 ............................ TATCTCAGATGGCGTCAGGTAGATGCTCAATC 2998989 28 100.0 32 ............................ AGTGGGGGATCACTAAAGTCGATGGCGTGCCG 2998929 28 100.0 32 ............................ AGTACGCCTGCGCATAGTTCCGCACACCCTTC 2998869 28 100.0 32 ............................ ATCAAAAGTAGCAGGGAATCAGAAGGCAAAGA 2998809 28 96.4 32 ..................G......... TGATTAAGATTGTCAAGGGAACTCCCCTGGTA 2998749 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGAGTGGTCGTCTGCTTAGGTACAGCGACAGTCTCGTGTTTCATGGTGAACGTTTGCTGTGCACAGCCGGTAACCGTCATGGCAAGCACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCTTTTTAATTAATCAATCAATATAAAGCGCGGGGATAATGCCACGCTTACAGAAATTTACAAGTGTGGGTGACAATAAATAGCGGGCGGGGCGGAGAAAAATGCCGCAGAACACAGGCGATAGTTCTCGGGCTTTCAACGCGGCAGCATGGCGGTGCGCCAGAGGGCAAGATGCGGCCGCAGTGCACGGTAATGTATGGCTGGCTTAGAACCCTTTTTTTTACTCTGTTTGTAACCCATTGATATTTAATGCTCGGATTGGCAGGTGAAAAAAAAAGGTATCGGCGGCAGAAAGGGGGAAAAGGCTTTAATTATTAAGCTGCTGAGCTTAAACTCTAACA # Right flank : ACGCCCCGCGCTTCGATATTTCACTGACCATCTTTATTCACAGCAGCCTTATTGGTGGTATAAAATATTTTTATTGAAAACGCTGGTTTGCTATGGGATTGAATGAAATATGGAAGTGTTAAACAGAACATCCGCTGTGCTCAGCTTGCCGTTAACCATACTGTGTGTTTCATTCTCCTCGCTGACAATTATGGGAGAACACAACTCGCTGGTTGATGTTTTCCTGTCGGTGATTGTTTTTTTTGGTTTTCTTAATCTATTCCGGATAGCAGGAAAGTTGATCGCCTGGTTTAATGGGAACGCTAACCAGGCATAGACATGAAGCGAGCCTCTGCTATTTCTGCCGGTCAGATAAATAACGGGAACCCTAGGGTTCCCGTTATTTATTGGTCATTATCGCGTGGCGAAAGGGGATTAACGCCCATCCACGGCTGCCGGGCTGTCCGCCTCGGCCAGCGCATCCTCCAGCACCTCGAACAGGCGGTCGATCTCCTGGCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4514328-4514180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060416.1 Serratia sp. JUb9 strain MYb239 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4514327 28 100.0 32 ............................ TGTAGCTTTTTGAAAATTATTTGGTGCTTGAT 4514267 28 100.0 32 ............................ GACAGAGTTTACAGTAAATGCCTGCGCATACC 4514207 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATGTGCGCTTGAGCATGTAAGTTAATTTAATGTTTTATTTACCTAGGGATATTAAATATAACTTAAAGGTATTGTATAAGGAATGAATGCACTGAAATTTTTAACTATATGATTTTTATTGAGGTTGAAGTTTTTGCATTGATAAAGTAAATGGCAAGACGTTTTATTGATTTATGTAAGTGGGAAAATGAAACGTTTCTGAATAGAAGCGCTATATTTTTCATTATCATTCAATAATGGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCCATTTGCTAGTTATGCCGACAGCCAGTGAGTTTAGTGCTTATGGCCTGAGTGCCACTGCTAGCATCCTTTAGGTTCTAACCCTTTTTTTGTGAAAAACTATAACCTATTGATTTTTAATGGTTATATTGAAGTGTCAGAAAAAATGGTTTTTGGTCAAATAATAAGGAATTTTCTGTTTAAACAGACGATTAACGCTATACTGCAACA # Right flank : AATCAGAATTCAGGCCGGGTTAACCGGCCTTTATTTAATCTGATTTATTCATTTTTTTTCTAATATGACGAACCAGCATAAATGTCAGCTTGCATAAAATTATGGATATTATTGTGTTTAAAAATAAAACTATTGCTATAGCCATGAAATCCCATGGTTCCGGATACCCCCCAATAATATCTGTAATGTTTGTTGCGGTATCCAGAGACATTACATGATGTATGTTGCGCCTGATGAAGTGATAAAATGGAAACCATACGCCAACGTTCATCAGGAATATGATGAAAACAGCTAATTTTGCCAGTATTAAAAATGCCTTTTTCATCCGCTTACCTTGCATTCTCCGTTGCTAATCACATCAATGATACCATACGCGCGCAATCTCATATTTCTGATATTGATTGTTTTAGTCCTCAGTAGAGCACTACGAATTGCTGCAAAGTCTGAGTGATGTTTTAGCGTGATACAACCATATGATATCGTTCCCGGATGCAGTCTAA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4516590-4516142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060416.1 Serratia sp. JUb9 strain MYb239 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4516589 28 100.0 32 ............................ TCCCGCGCGGCCAGCAGTTCACGCGCCATTGC 4516529 28 100.0 32 ............................ AGCAGCGCCGGAGGCTTTCAAGGCACTGATTG 4516469 28 100.0 32 ............................ TCGATACGCTTTCGAGGTTATGACTGTAAGCT 4516409 28 100.0 32 ............................ TGGCGCGATAGGCTGGATTAAATCAGCCATCA 4516349 28 100.0 32 ............................ ACTTTCATCTAGTGTGCAGCTCAATACACTAC 4516289 28 100.0 32 ............................ GATAGAAAAGTGAATTCGCTAACTGAAACAGG 4516229 28 100.0 32 ............................ TTAGCGATCACCCCGTGATTGTGGACGTGAAG 4516169 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CGCATGGCTGTCCGGGTTGACGATAACGCTTGGGAACCCCAAAACCATCGCCTTTTACCTGGCCATTCTACCGCTGGTTATCTCTTTGGATCGTGTATCCCTACAGGTTTGGGGAACGATGCTAGTGCCGTTGACCATGTCTGTCCTATTGGCCGTCGGCGCTATCTTTATTCTGGCGGCAATAAAAATACGCCGTTTCCTCACTAGCGCTTCGTCACAGCGCATACTCTTTCGTACCACGGGAGTTATTATGGTGCTGGCAGCTTTTGGTATGGTGATGAAATCTTTGTAAGGGCGGCAGAACATAGGCTGGCAAACGTTGTTTGCGCCTCGCGAGCTTTATAGTTTGAACACCAGTTCCCAGGCTTTGACCCTTTTTTTATACCGAATTTTAATCTATTGATTTATAAAGCTATAATTAGTGCGTCTAAAAAAAGGGTTATGGGCAAAATGATAGTGCTTATGCTGTTTAAACAATCGATTAGCGCTATACTGCAACA # Right flank : TGCAGGCGCACCCCGCGCAGGGCGCCGGCGGGGTTTTGCTTTTTCTATGTAAGTCACGGCCGGTAGCGAATCTCAAAAATTATAAACAACTGATACCAATATCGATTTTGAACTCTCCAACATGCTTACTGTCACTGTTTCTTGAGGATCGTCTCCAGTCCAACATGTGGCCTCGATAAAGCATTCTTTCTGCTTTTTGTACCCTGCGGTTTCTAGGTAAGCATCGACTTTACTCGAATCATTTGCATCGTAATATCTGATCGCATATACATGTGATGAAGGGCCGGTAATGTTTGCAAAATCAAAGTCATAACGAGGGGATATGCGCGGCATAGCCTTCAGGAGGTCAGGAGTATAAAACTCATACTCTCTCTTATCCTGTTCGGTATAGTGTGCGCTGCCGGCAAAATTCATCGCTATATAAGGCCATACCCACACGAATGCAGCGGTAATCACCACTCCCGCTACTATGATCGCTTTAACTGATTTACGCATAGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4519498-4519051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060416.1 Serratia sp. JUb9 strain MYb239 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4519497 28 100.0 32 ............................ AACCTCCTCCGGCCAGTTCTCAAGAACTTTAT 4519437 28 100.0 32 ............................ GAGGACTCTACGACACGCCGGAATCTTTCCCT 4519377 28 100.0 32 ............................ TGGTAAAAACCGTTTTGCTTCCGATTCCGCCC 4519317 28 100.0 31 ............................ TGCCAGCAGGGGCAGCATCAGGTCATCAACC 4519258 28 100.0 32 ............................ TTACGGGCTTCCTGATCGTTCTTGTTCTTGTT 4519198 28 100.0 32 ............................ TTGCGTTGGCTCTTTACCAGCTGACGCCCGTT 4519138 28 100.0 32 ............................ AGGGAAAAATTTGTAGCAGTTGAGTCTTACTG 4519078 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GCTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCATTGACCGAGCTGGAGCAGCACAGCTGGCGTAAAGGCCTGCGTGACTACACCGAAAGCAGCGCGATATTGCCGGTGCCGGCAGGGGCGGCGTATCGCACGGTGCGTCGCGTGCAGGTGAAAAGCAGCGCAGAGCGGCTACAGCGCCGTTCGGTCGCCAAAGGCTGGCTGACGATGGAGCAGGCGCAGGAACGTATTCCGGCGGCGAAAGCGCAGCGCAGCACGCTGCCGTTTATCCGCCTGAAAAGCCTCTCCAACGGCCAGTCTTTTTTATTGTTTATCGAACAGGGCATGTTGCGCAGTACTCCGACCGCCGGTGAGTTCAGCGCTTATGGCCTGAGTGCTATCGCCACCGTTCCCTGGTTCTGACCCTTTTTCTGTACGCAATCCTAACCTGTTGATTTAGCAGGTTAGGATTGAAGCGTCTGAAAAAAGGGTTTTTAGCGGAAGAATGAGGGTCTGGCTGTTAAAACAGTCAGTTAGATGTAAATGGCAACA # Right flank : TTTAATAATTTTAGCGGGGATACAGTAAAAATTGTTGTCGATCATGGTCGCCATATGAATTTTGGCGATCTACCACAGGGGATATTTAGGTGATTAAGAGAACTAAAATTTTTTCGATCGTTTTTATAACGATACTTTTGTTCGGTTGTTACAAAGTAGCCTCGGTTGCCATGACGGACAGCACTGATTACTCCCGTGCTGATTGGCTGGCGTATAAGCTAATCGCGCCAGATGAAGTAAAGAACGCTCCTTTTTTGACTGATGATACGGTCATTCATTTCCGAGCTGCTGATGGAGCTTCTCCGCAAATAGACGAGATTGAGTATGGCAAGAATGTGGATGAGGCTGTCTTGGTCGACTATCTGGAGTCTTTAGGATACCGACACGTTGACGACCCCGTCTTCGGTAAAAGGTGGGCACAAGAAAGCTCCGGAAGAAGCGCATATATAGCCAAAACAGAGGATGCGATAAAATTAACCTTCACTCATTGATCGGTAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //