Array 1 1256-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBU01000037.1 Pseudomonas aeruginosa strain Pa1060 K22_S95_R1__paired__contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================== ================== 1255 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1195 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1135 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1075 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 1015 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 955 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 895 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 835 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 775 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 714 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 654 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 594 28 100.0 69 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAGGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNN 497 28 67.9 32 NNNNNNNNN................... TGATGCCGGACATGGGACGTTTCGCGGGAACC 437 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 377 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 317 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 257 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 197 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 137 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================================================== ================== 20 28 98.2 34 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGCTAGTTCACTGCCGTGTAGGCAGCTAAGAAATGGCTGATCAGGCTCCAGAACGGATCGTAGACGTTCACTGCCGTGTAGGCAGCTAAGAAATTGATATGCCGGTAGAACGTCGGGCGAGACATGTTCACTGCCGTGTAGGCAGCTAAGAAATCGAACGCTGCTGAGCGCCGAACGCATAGATGGTTCACTGCCGTGTAGGCAGCTAAGAAAAGACCGAGGACGGCTCGAAAACTCGGATGATCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTC # Right flank : ATGATCACCCAAGCGTGCGTATCGCGGCCATCCGTTCACTGCCGTGTAGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1750-1482 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBU01000037.1 Pseudomonas aeruginosa strain Pa1060 K22_S95_R1__paired__contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1749 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1689 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1629 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1569 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1509 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAGATGCCGCGATCATAGCGCGCCCTACGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGGTACTTCTGAACCATACGTCGCCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTCATCGATGAACGACGAGCCGGTCAGTGCCGTTCACTGCCGTGTAGGCAGCTAAGAAAAGAAGCTGGAGCGACGGCTGGCGGCAATTCGTGTTCACTGCCGTGTAGGCAGCTAAGAAACCGGAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9853-8418 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBU01000006.1 Pseudomonas aeruginosa strain Pa1060 K22_S95_R1__paired__contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================== ================== 9852 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9792 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9732 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9672 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9612 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 9552 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9492 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9432 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9372 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9311 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9251 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9191 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9131 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9071 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 9011 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8951 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8895 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8835 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8775 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8715 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8655 28 67.9 62 ...................NNNNNNNNN NNNNNNNNNNNNNTATAGGCAGCTAAGAAAAGCAATGGAAAGCAGCGATGTGACCCGACCCG 8565 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8505 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8445 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ============================================================== ================== 24 28 97.5 33 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 425254-424266 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBU01000008.1 Pseudomonas aeruginosa strain Pa1060 K22_S95_R1__paired__contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 425253 28 100.0 32 ............................ ATCACCGCCGCCAGTCCCACCGTTTCCGTCTC 425193 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 425133 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 425073 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 425013 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 424953 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 424893 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 424833 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 424773 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 424713 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 424653 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 424593 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 424533 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 424473 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 424413 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 424353 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 424293 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //