Array 1 114730-113141 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLSQ01000002.1 Acinetobacter sp. RF15A NODE_2_length_251452_cov_58.8355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 114729 28 100.0 32 ............................ TTTCGATGGTTGTGTGGCGTTTGGTAGCGATG 114669 28 100.0 32 ............................ AACATTTAAAAAACAAGGCTTAAAAGATAGCT 114609 28 100.0 32 ............................ TCGTTTTAATTCCGTTGCGATTTTATTTACTT 114549 28 100.0 32 ............................ TGATAATCAATTATCTATGCTTAAATTTACAA 114489 28 100.0 32 ............................ CTTTAAACGTGATATTAAGCAAATGCCTTATA 114429 28 100.0 32 ............................ AAAACAGCAAATTCAATTTTATGACTACGTGA 114369 28 100.0 32 ............................ ATAATCATTTTGAGCTGTTTTTAATTGTGTAA 114309 28 100.0 32 ............................ GACATCGCCTAGATAAGTAGTGTCTGTTACTT 114249 28 100.0 32 ............................ TGTTGGAAAAACACCATTTACAATAGGGTTAG 114189 28 100.0 32 ............................ CATATCAAGCTCTTCACCATTCTGTAATGCAC 114129 28 100.0 32 ............................ AGACGTTCTTTTCGAAGGTTACCGTGCCATAT 114069 28 100.0 32 ............................ CAATACTTTTATCCATTCCGCAAGAGCGAAGA 114009 28 100.0 32 ............................ TGTATTTAACATCGGATCTGGTGTGGCAAACT 113949 28 100.0 32 ............................ GGCCCCGGCCCCGGCTCCCATTCCGATCCATT 113889 28 100.0 32 ............................ TAGTTTGTTTAGGTGGTAATCAATCGGATAGT 113829 28 100.0 32 ............................ TCAGAAGGGTAGTTCTGTATCTAGGTCATCTT 113769 28 100.0 32 ............................ AGTTAATGAAGACAAGACTTGTGCAGCAAATA 113709 28 100.0 32 ............................ TTATTTTCATTGTTATCGCTATCGCATGCTGG 113649 28 100.0 32 ............................ AAGCAATGAAACTGTTTTCCGAGTTTGGAGAG 113589 28 100.0 32 ............................ AGTTGCAGGTAATCGATGATGATGCAGCCCAA 113529 28 100.0 32 ............................ TCAGAAGGGTAGTTCTGTATCTAGGTCATCTT 113469 28 100.0 32 ............................ AGATACAGGCGGTTTGGGTACTGTGGATACAT 113409 28 100.0 32 ............................ TAACCAAGCTTCTAAAGCGTTGATTGTCTCAA 113349 28 100.0 32 ............................ AATATGCTCGTGCAAAAATCCTATCACAATTA 113289 28 100.0 32 ............................ TCGACCATTACACCAGGCACACCTAATAAAGA 113229 28 100.0 32 ............................ GCTAAGGACAGGTTCGTTTAAATAGAATTTTT 113169 28 100.0 0 ............................ | C [113144] ========== ====== ====== ====== ============================ ================================ ================== 27 28 100.0 32 GTGTACTGCCATATAGGCAGCTTAGAAA # Left flank : TGATCATTGGTGCCTTTGTGGAGGCTCGTTCTTGTGAGCGTTTCTATGCACTTGCACCTTTGGTCGATGAAGAGCTAGGCCGTTATTATCGTTATCTGCTGAAATCCGAATCCCGCCATTATGAGGATTATCTGGCACTGGCGATGGATGTGGCAAAAACCGCAAAATGGAAAAATCCCGAAGAGAATATCCAGAGCCGTATTGAGCATATCCGGGAAGTAGAAAAGAATCTGATTTTAAGTCCAGATGAGCTTTTTCGTTTTCATAGTGGTGTGCCCGTACAGGCAGCATAAGTTTGACATGATGCAAGCGGGACAAAGTTCCCGCTTTTTCTTTGGGCTGAAGTTGATTAAATAGAGGCTTTATTTAACCCAAAATATTTTTATGCTCTAATTAAATATAAAAATCAGAAACTTATAGATAGATAGGAATAAGAGGGCTATTGGGGTATATTTAAGATAATACTATGTTTTTTATCTGGTTTTAGGTATTTTGGTTGT # Right flank : GCGAGTTGATGATTTTAAGGTCGCTAAAAGAAGGAAGGGCATAAAATAGAAAATAAAAAAGCCCGCTTTAATGCTGCGGGCTTTCTTGAATTTGGCTCTCCCACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATGGGAGAATCTGCATGCGATTATAGAGACATTTTGACAAGGGTCAAGAAAAAACTTTCATATTTATGACAAATCATATTTATCTGATTTTAATTTAAACAATTGCATAAAAATATTGAAAAATACTTGTCAGGAGAATATCCAGTTGCTAGATTGAATCCATAAAGTCGTTTGATCAAATGGTCAAACAGTGTGGATTTAAACCGACTTGCCAGCACAAAAATGGCTAAACTGGAGAAAGCGAATGAATACGCTCACAATCCCCCAAATTTTCGCGCAGTTGTCTTTCTATCAAGAGCATTATCTCGATATTATTCAAGATTCGAGCCAATATTTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 90180-95130 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLSQ01000001.1 Acinetobacter sp. RF15A NODE_1_length_256056_cov_58.1817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90180 28 100.0 32 ............................ AACTAAAATGTGGGATGATGGGAGATTTACTT 90240 28 100.0 32 ............................ ATCAGATAATCAAAGATTATTTGATCCTTTTC 90300 28 100.0 32 ............................ TGAACTATGGCCGGGGGATACACCAAAATTAG 90360 28 100.0 32 ............................ AAGGCTTCAACCACGGGGCTGTCCCTTGCTCT 90420 28 100.0 32 ............................ TTTAACGGGCTTATATGCGTCCCCTGTCGTTG 90480 28 100.0 32 ............................ ATAAAATTAGACTTATTTAAACACCAAACGCC 90540 28 100.0 32 ............................ ACTTACTATCTATTTTAGTGGGCCAGATTGCG 90600 28 100.0 32 ............................ ATTGTTAAATTTTCCTCGCTTGCTGTGTAAGT 90660 28 100.0 32 ............................ GATCTAACAGCTCAAATAATTCTTCGTCGTCC 90720 28 100.0 32 ............................ AAAATATAAGCCTCACGCTTTGCGATCCGCTG 90780 28 100.0 32 ............................ TTAATTGGAACTCTAAAGCACGGCCATAGAAT 90840 28 100.0 32 ............................ TACTAACGTCGGGGCAGCGGTGCTAGGAGATA 90900 28 100.0 32 ............................ AAGATTTCCTTAATATCGTGAATGATAAAAAT 90960 28 100.0 32 ............................ AACCCGGTTCCGCACTATCGGAAAAATCTTCG 91020 28 100.0 32 ............................ AATTTCAACGGGTGGCACAGCCGCTTTTTTAA 91080 28 100.0 32 ............................ AACATGCAACTTAACCAACCTATACAACTACT 91140 28 100.0 32 ............................ TTGATTGGTAGTGACTACGTTATTAGTCCTTT 91200 28 100.0 32 ............................ TTTTGCACAGTCAAATGATCTTCAGTGGAATA 91260 28 100.0 32 ............................ TAGCTGGATGGCCGTGTCTATCATGCAAAATT 91320 28 100.0 32 ............................ TACAGATGCCGGACTCGTAACAAGCCTGTTAG 91380 28 100.0 32 ............................ TGTTTGAAAACAAGCGGGAAAAACACCCAAAC 91440 28 100.0 32 ............................ ATGACGACGCACTTTGTTGGATTAAATCAAGC 91500 28 100.0 32 ............................ ATTAATGTTTTTGTTTTTAACATCATTGTATA 91560 28 100.0 33 ............................ AATTCATAAAGTCGAATACTGTATTTACTTTTA 91621 28 100.0 32 ............................ ATTCTTTTGCATAAATTAAAAGAGCGAAAAAG 91681 28 100.0 32 ............................ AAATTGAGGGGCAAATGGAAGCAATGTCACAC 91741 28 100.0 32 ............................ TGATCCATAACAGAATTAACATAGTATGGATT 91801 28 100.0 32 ............................ TACAGATCAAATCACACAAAATCCAATCATGC 91861 28 100.0 32 ............................ TTCTTTGAATTTGGAGCGTATATCAAAAGAAC 91921 28 100.0 32 ............................ TTTTGTCATATCGCTATATGCTTCTGAGCGAT 91981 28 100.0 32 ............................ TTCTGCAACCTCCGCAACTAGATACAAGTTGC 92041 28 100.0 32 ............................ TTGACCTATATTAGTCCTGGTCGCTTGAACTG 92101 28 100.0 32 ............................ TGCTGTTCTTCTCGTTGTGTTAAGAGAAGATG 92161 28 100.0 33 ............................ ATTATGATGTTAAGCAATTTAACCAAACTAATT 92222 28 100.0 32 ............................ GTTCTCATTGTCTGGTTTAGGTGGCGACACGA 92282 28 100.0 32 ............................ AAACAGGGCTAAAAACGCCAATAAATGCAAAA 92342 28 100.0 32 ............................ AATAAAACGTGCTTGAGCGTGATTTTCTGATA 92402 28 100.0 32 ............................ TTAAAAGGTATTGATGCTTTAAAAGGTGAACT 92462 28 100.0 32 ............................ TTTAACTTGTAAGCCTTGCAAAGATGCTTGTA 92522 28 100.0 32 ............................ TTTATTACAGCTTGGACAATCAATTTTAGTTA 92582 28 100.0 32 ............................ CTTCTTCGAGCCTTTGTTTTTGGTGCTTTAAC 92642 28 100.0 32 ............................ AAATAACAGTTGGTTCAAGTTGTAATAGGGCC 92702 28 100.0 32 ............................ GTAAAAAGTCTGAAAATAGTAAGCCCGAATCT 92762 28 100.0 32 ............................ AGTCTGGACTGCCTCTTATGCTAAGTACGCAA 92822 28 100.0 32 ............................ TAAACCTGAATTTTAAGCCAGATAATACTGAC 92882 28 100.0 32 ............................ TTTAATAACGATGTGAATAGGCGCTTCACGAA 92942 28 100.0 32 ............................ GTTAATCAAAAACAAATAAGGCTGCGTAATGC 93002 28 100.0 32 ............................ TTTTGGTAGACTTTCCATAGCGATTAAGTGCA 93062 28 96.4 32 ........................T... TATATGGCGCTTTTTTTATCTTGCGTACATTT 93122 28 100.0 32 ............................ ATTACTTTGGGGCAGCTACAAAACAATAGAAT 93182 28 100.0 32 ............................ TTGAAGCTCGGCAGATCTGAAAAGTACAAATC 93242 28 100.0 32 ............................ ATGTACAACAATTGGGGTGGATAAGTCTAACG 93302 28 100.0 32 ............................ ATTCAATTAAAAACGGCTTTTCTGATGGTGGA 93362 28 100.0 32 ............................ TCCTCAAGTGGATCATCGTCTTCATAGCTCGA 93422 28 100.0 32 ............................ ATCTAAATTAATTGAGCCATCATTGTTAATCT 93482 28 100.0 32 ............................ ACATATCATGAAAATTCGGATCATTTAGAAAT 93542 28 100.0 32 ............................ TAGTTCACGTATGCGCGGCTTACTTGAACAAT 93602 28 100.0 32 ............................ TTGTGCAGGGTTTTTTGATATAGCCAATTTAA 93662 28 100.0 32 ............................ AGCTCTTGAGTAACATTCTGATAAAATGTATT 93722 28 100.0 32 ............................ AACCAAACATCATTGCACGTTTACGTGACTGA 93782 28 100.0 32 ............................ AGATATATGGTTTTTAATCCATTCTGCAAGGC 93842 28 100.0 32 ............................ ATACATAAATAAAGGACTAAACGGAACAGAAA 93902 28 100.0 32 ............................ ATTGAAAGAAACAATACCTGTTATTCATCGTG 93962 28 100.0 32 ............................ TAACAGTGTATATCTGGAAATTCCCGTACAAA 94022 28 100.0 32 ............................ AGCAGCGCGAAACGAATGCGAAAGAGCGCGAA 94082 28 100.0 33 ............................ CAGTGACAGGCTTGTTTTTTGGCTCCGGCTTTT 94143 28 100.0 32 ............................ TCTACGCCAGAAGCTTTTTCAAACGTATCCCA 94203 28 100.0 32 ............................ TACGTAAATGTGTGACCTTGTTGCCCTCGTGA 94263 28 100.0 32 ............................ TGTAAGCGGTTTAGCCTTTCGACTATAGCCAT 94323 28 100.0 32 ............................ TGATCGAGTCGGTGCAGCCACAAAAACAAATT 94383 28 100.0 32 ............................ AGGATGAAAAATATTGTCTAGTAGCTGGGAAT 94443 28 100.0 32 ............................ CTATGAAGAACATTGAAATGGGCAATCCTAAA 94503 28 100.0 32 ............................ TGGGGGCCATGCTCTTCACATGGGATCTGAAC 94563 28 100.0 32 ............................ TACTTTTTCCATAGACTCACCTAAGCGTTCAG 94623 28 100.0 32 ............................ TAGACGGCCAGCCTTCAATTTTATCACTAGAT 94683 28 100.0 33 ............................ AACCAGCTTTACTTGCCGATGATTCGGTTTTGT 94744 28 100.0 32 ............................ AACCGGGCAGAGATTGAAGCGAATGACTGGTA 94804 28 100.0 32 ............................ GCACAAAGGCGTTTATCTTCAAAATTTACAAT 94864 28 100.0 32 ............................ TGTATTAATACCAAACGCACGTATAGCAATAG 94924 28 100.0 32 ............................ GTGACACCATCGGCATGATTGGTCACCTACCT 94984 28 100.0 32 ............................ CTAAATCTACCCATTTATTTGTAGAAGCCAGT 95044 28 100.0 32 ............................ ATATTGACCTCAGCCTCACGATCCGAAGGACA 95104 27 89.3 0 ....................T...-..T | ========== ====== ====== ====== ============================ ================================= ================== 83 28 99.8 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : GATCTAACGAAATGGCTGGATCGCTTAACTGATTATCTGCATGTCACTTCGATTCGTGAAGTACCTGAGGCTAAAGTGACGGGCTACGCAATATATAGTCGTAAACAGGTTAAAACCAATGCTGAACGCTTGGCACGTCATGAGGCAAATAAAGGACGTTATATTTATGAAAACGCTTTAGCGCATTATCAAAAATTTATCACGACTACGGATTTACCTTATATTCAAATGCTCAGCCTAAGCACTTCTAATGAACAGGATAAGAAGCGGTTTAAATTATTTATTGAAAAGCGGCCTGCTGAAAAATCTGAAACTCAGGTTTTTAGTACTTATGGTTTAAGTTCGGTGTCATCTGTACCCGAATTTTAACCCAATATTTTTTCACTCTTTAACAGCTTAATAAAATCAATAAGTTATAGCGGTAGGTTAAAACTTGGGTCTTTTGTGGATTTAAAGGGTTAACTTGCTGTTATAACTTTATTTTTTGCTGTAAAATTACT # Right flank : TCTTAATACCTACACCTGATTACCATTTTTAAAAATGGTGACTGATCACCTGAATCACTCACCATATTCTTTGAGCCGAGTAGGGGGCTAGTTGTTGGCTTCTGGCAAATCAAACCAGATCACTTGAGCATCCTCCAGCGCCTTAATCTGACTTGCTTCTGTGAAAGCAATTGCACCACCAGCCGCTACAATATGTTCTGCAATCTGGACTGAACCGGAAATCACATGTACATAATTCACCTGCTGTGTTGCTTCAATCTCCAGAATTTGTCCTTTGTGAATCACTGCAGTTTTGACTTCAGTATTCTGGCGGATATGCATAGGGGCATTGTCATTTGGTCCACAAATCAAATGCCATTGGTTGGGCTGCTCGTGCGGATCACATTTAATTTGTTGATAGCTGGGTTCGGCATTCCGTTCATTAGGCACAATCCAGATCTGCAATAAATGCACCTGCTCATCGCCCTGGTTCATCTCACTATGACGTACACCTGTGCCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //