Array 1 5597-4968 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZU01000057.1 Pseudomonas aeruginosa strain 33 scaffold_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5596 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 5536 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 5476 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 5416 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 5355 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 5295 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 5235 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 5175 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 5115 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 5055 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 4995 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACYCACTTGTTCGACAACGCGAAAGTGCGCTTGAGYTCGGCYATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCYCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTMGCATCGCCCATCACAYGACCTTTCGCGCRCGAACGGCYKGSRTSARCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGRAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCRTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10123-8478 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZU01000134.1 Pseudomonas aeruginosa strain 33 scaffold_133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10122 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 10062 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 10002 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 9942 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 9882 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 9822 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 9762 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 9702 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 9642 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9582 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9522 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9462 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9401 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9341 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9281 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 9221 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9161 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 9101 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 9041 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 8981 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8925 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8865 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 8805 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8745 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8685 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8625 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8565 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8505 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1253-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZU01000844.1 Pseudomonas aeruginosa strain 33 scaffold_843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1252 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 1192 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 1132 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 1072 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 1012 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 952 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 892 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 832 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 772 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 712 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 652 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 592 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 532 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 472 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 412 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 352 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 292 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 232 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 172 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 112 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 52 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : AAGTAGCCGTCGGCGTTGTGACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //