Array 1 108066-106265 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEH01000004.1 Salmonella enterica subsp. enterica serovar Amager strain BCW_2635 NODE_4_length_272209_cov_0.181974, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108065 29 100.0 32 ............................. TTAATCCGCGCATTCAATCACCTGAATACGTT 108004 29 100.0 32 ............................. GCGCCAATTTAAATGGACAGATTAGTGAAATT 107943 29 100.0 32 ............................. CATTAAATAAATCTAGCAATTCCTTTTGTCTC 107882 29 100.0 32 ............................. AGTCACTGCGGCGGGATAACCACGGGATGAGT 107821 29 100.0 33 ............................. CCTATTCGTATGTGCTTCCTGCTGATTTTCTGC 107759 29 100.0 32 ............................. TACGTTACTTCATGAGCATCCAGAAATGACAA 107698 29 100.0 32 ............................. CAGCTCGACGACACTGAACAGAGCGGAATCCC 107637 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 107576 29 100.0 32 ............................. AAACTGCTCGAAATTGTCGCCTATTGGGAAAT 107515 29 100.0 32 ............................. ATTATCTTTCACTTGCTTCAATAAGCCCCCGC 107454 29 100.0 32 ............................. CGGCGCACGTCGCTGGCCGATTCCCTCCACAC 107393 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 107332 29 100.0 32 ............................. TGTGCGCCGCGTAGGGAAAAAATACGGGTGCG 107271 29 100.0 32 ............................. CCGCCACGGTCTTTAATTCGGGGTATTCAGTG 107210 29 100.0 32 ............................. AGGTACTGTGCACGTAACGCGTCGAGGGCCGG 107149 29 100.0 32 ............................. CTACGGACTCGAAAGAATCGATGGATCTTGCT 107088 29 100.0 32 ............................. TTGCCGTCAGATACCGTACCTAAACCCCGCAG 107027 29 100.0 32 ............................. GACGCGATCGTCGAATATCGCAAACCAGCTCC 106966 29 100.0 32 ............................. GAATTAACAAAAGAGCAGTTAATAGAGGGGGC 106905 29 100.0 32 ............................. GAAAATCACCTTGATAGTTCTGGCCGCGAGAG 106844 29 100.0 32 ............................. CCTGGGGGCGTATGACGGTGTGACGGATGAGG 106783 29 100.0 33 ............................. CGCCGTTACGTTGCCCTGGGTGTTCTCGCCCGC 106721 29 100.0 32 ............................. GCAGGAAGACGCAGACGCGGCGCCCGGTGAAG 106660 29 100.0 32 ............................. GGGAAGGTCAGCCGTTCGCGCAGCACGTCGAT 106599 29 100.0 32 ............................. GTTATGGAGATCGGGAGAACAAACGCGCGGAA 106538 29 100.0 32 ............................. CCCGCCGCCGTCGCGTTTAAATACGACAACGC 106477 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 106416 29 100.0 32 ............................. CGGTACAGCGACTACAGCGTGTTTTCCGTGGC 106355 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 106294 29 100.0 0 ............................. | A [106267] ========== ====== ====== ====== ============================= ================================= ================== 30 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126267-124347 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEH01000004.1 Salmonella enterica subsp. enterica serovar Amager strain BCW_2635 NODE_4_length_272209_cov_0.181974, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126266 29 100.0 32 ............................. CCTGCAACGCGATTTCAAGTTCCTGAACGCTC 126205 29 100.0 32 ............................. ACGAAGCGCCTGGTTGAGATTGTACACGGCGA 126144 29 100.0 32 ............................. GATTCATAATCCGTATGCCTTTTTTAAATAAA 126083 29 100.0 32 ............................. GAGATCACACCCACAGTCTCCAACTTCATTAA 126022 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCGCCAGGTTGAA 125961 29 100.0 32 ............................. GAGCATTGCGTTGCCTCTTATGCGTCGTGGTG 125900 29 100.0 32 ............................. TACAGCAACGATATGATTCTTTGTTAAGTAAT 125839 29 100.0 33 ............................. CGCGAGCTATTCCGGCCACACCGCGTGAAATGC 125777 29 100.0 32 ............................. GGTTTATGCCGTTGGACGAAATCGGCCAGGGG 125716 29 100.0 32 ............................. GGTGGACGGCCAGCCTGGTAACGATGGACTGG 125655 29 100.0 32 ............................. GGCGGCGATTTGCCCGCGTTTATCTTGCTGGT 125594 29 100.0 32 ............................. CCGCTTGAGTGGGCTGGTGGTGGGAAACTACA 125533 29 100.0 32 ............................. CGCCCTGTAGTTATTTCATACCGCTTTAGAAG 125472 29 100.0 32 ............................. CCGGTCAGCACACCGGGTGTGCTGGTTTACGA 125411 29 100.0 32 ............................. CCTCCTGCTCAGGTGCCGAGAATTGAGGGCGC 125350 29 100.0 32 ............................. TTGATGACGTCGCCCTCGCCGTCTGCGACCTC 125289 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 125228 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 125167 29 100.0 32 ............................. ACATCTCGGCGTCTCGCGTGATGTGGCAGGCG 125106 29 100.0 32 ............................. AACCAGCAGAGTTAGACGTGTGGCAGTTCGGA 125045 29 100.0 32 ............................. CCTATTGAGGTTCATCCCCGCTAACGCAGGGA 124984 29 100.0 32 ............................. CAGTCGGGCGGCACAGGATCAATATGAGCGTG 124923 29 100.0 32 ............................. AATCACCGCCACTGGACGCGCTGCGTTTTGCG 124862 29 100.0 32 ............................. GCGACTCCAAAACAGCGCCCTACAAGTCAAAA 124801 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 124740 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 124679 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 124618 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 124557 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 124496 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 124435 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 124374 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCTGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGAGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //