Array 1 232840-234261 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALSR01000004.1 Streptococcus agalactiae GB00082 ctg7180000002733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 232840 36 100.0 30 .................................... AAGCCGATTTTTGCAAAGCGTTCTTGCATC 232906 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 232972 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 233038 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 233104 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 233170 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 233236 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 233302 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 233368 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 233434 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 233500 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 233566 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 233632 36 100.0 30 .................................... GACCTCCTCGAAATTGCTATCATTCCATAT 233698 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 233764 36 100.0 30 .................................... TCCTCTTTCTATGTTTCAATTGCCAATTTT 233830 36 100.0 30 .................................... AAAAAATCTTGAATCATCATATAAAATCTT 233896 36 100.0 30 .................................... AGCTATCTTTTTCGTACTTTGAAATAGTTT 233962 36 100.0 30 .................................... TGGAAAAAGGGCAAAGTATTCTTGATTATA 234028 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 234094 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 234160 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 234226 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //