Array 1 176731-175254 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAN01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3274_R1 NODE_4_length_317115_cov_15.428_ID_6845, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 176730 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 176669 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 176607 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 176546 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 176485 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 176424 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 176363 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 176302 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 176241 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 176180 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 176119 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 176058 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 175997 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 175935 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 175832 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 175771 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 175710 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 175649 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 175588 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 175527 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 175466 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 175405 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 175344 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 175283 29 96.6 0 A............................ | A [175256] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 194762-192842 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAN01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3274_R1 NODE_4_length_317115_cov_15.428_ID_6845, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194761 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 194700 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 194639 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 194578 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 194517 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 194456 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 194395 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 194334 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 194273 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 194212 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 194151 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 194090 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 194029 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 193968 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 193907 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 193846 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 193785 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 193724 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 193663 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 193602 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 193541 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 193480 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 193419 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 193357 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 193296 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 193235 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 193174 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 193113 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 193052 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 192991 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 192930 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 192869 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //