Array 1 92230-92657 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDOL01000012.1 Bacillus pumilus strain DE0560 NODE_12_length_119621_cov_77.667249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 92230 32 100.0 33 ................................ TCTGGAACCGTAATCGGTGTGACCATTTTCGTC 92295 32 100.0 34 ................................ GAATTTACAGGGAAAACAAATTCCGACTACTACA 92361 32 100.0 34 ................................ TAAAATGGCATTTATGTTACTTAACAAACTTCTA 92427 32 96.9 35 ...........T.................... AACGCTGAGGATGCACGAGAAGGAAAGAAAGACGC 92494 32 100.0 34 ................................ AATGAACAAATGAAGTGGCAGGATCGTTTGGCCG 92560 32 100.0 34 ................................ ACCGATATTTTGGGTGCTGCTGAATCGAAAAGTA 92626 32 93.8 0 ..................A....A........ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACGAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCTCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTTATGAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TATGCAGTGACCTCCTGAATGTATGATGAATTGTTGTCGCACCCATATATGAGGTGCGCATGGTTTTCAATGATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAATCCATCAAAATAGACTGTTCATTTGTATAGTGAAAACATGACTTTTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTTGTACTGAATGGTGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACTGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 100734-101173 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDOL01000012.1 Bacillus pumilus strain DE0560 NODE_12_length_119621_cov_77.667249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 100734 32 100.0 35 ................................ TCAAATTCCGCCATAAGTCACATCCCACCCCTCTA 100801 32 100.0 34 ................................ CCGATGCAGCCACGCCGACCATCCAATCGCCGTT 100867 32 100.0 34 ................................ TAAAATCACTTGCCTTTGAAGAAAATGTGATCAG 100933 32 96.9 44 ............A................... ATAAGCATTGGAATGAACTAAGAAAAATCGAAAAATCAGTCAAA 101009 32 93.8 33 T...........A................... ACCATCAAATTAATGAATTCAAAAAACTGTGAA 101074 32 93.8 35 ...........CA................... CTTGCTTGGATATGTCGGTTTAGTTGGTGTTTCAG 101141 32 84.4 0 ...........CA......GA......A.... | T [101170] ========== ====== ====== ====== ================================ ============================================ ================== 7 32 95.6 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : ATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCGCTCCAATCTTCGTGCTTCTTGACGCGATCGACGTCGCACTCTACATGAGTGGGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGCGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAGAAATGAGAAAAAATGTATGTTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATATGGGTGCGTGGATTGAAATGTGAACACCGTTAAATAAATAATAGTAAAAAGACAGTCGCACTCTATATGGGTGCGTGGATTGAAATCCTGCCACTTCCTCAAAAGTTCTCGTAATCATTGTCGCACTCTATATGGGTGCGTGGATTGAAATATTGTTATGTACAAAACCTTTATCAAGAATGCTGACGCACTCTC # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 101465-101693 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDOL01000012.1 Bacillus pumilus strain DE0560 NODE_12_length_119621_cov_77.667249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 101465 32 100.0 35 ................................ GTGAACACCGTTAAATAAATAATAGTAAAAAGACA 101532 32 100.0 33 ................................ CCTGCCACTTCCTCAAAAGTTCTCGTAATCATT 101597 32 100.0 33 ................................ ATTGTTATGTACAAAACCTTTATCAAGAATGCT 101662 32 71.9 0 .A........CC...A....A.A...CAC... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.0 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : ATAAGCATTGGAATGAACTAAGAAAAATCGAAAAATCAGTCAAATTCGCACTCTATATGAGTGCGTGGATTGAAATACCATCAAATTAATGAATTCAAAAAACTGTGAAGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTGCTTGGATATGTCGGTTTAGTTGGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAGAAATGAGAAAAAATGTATGTTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTTCTGCAAATTATATAAAGTCAAATACTTATCCATATCAAAATCTACACAAATGATTAATCAAAATAATGTACTTTCCCCTAAATCCAAGCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGTAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGATGATCCATGTCGATATGGCAGATCGCGACGAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCTGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAGGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGGC # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //