Array 1 9410-10555 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFX01000113.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2175 NODE_113_length_14871_cov_0.0940292, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 9410 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 9471 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 9532 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 9593 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 9654 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 9715 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 9776 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 9837 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 9898 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 9959 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 10020 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 10081 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 10142 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 10221 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 10282 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 10343 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 10404 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 10465 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 10526 29 96.6 0 ............T................ | A [10553] ========== ====== ====== ====== ============================= ================================================== ================== 19 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1213-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFX01000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2175 NODE_147_length_11328_cov_0.0913706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1212 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 1151 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 1090 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 1029 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 968 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 907 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 846 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 785 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 724 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 663 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 602 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 541 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 480 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 419 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 358 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 297 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 236 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 175 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 114 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 53 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGAGATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //